Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0524 ATGGCGACGAGGAATCGAACTGCACAGTTTAAAAGGCACAGGGACGCCGTGAAGAGCGTCCGTGCACCTTTATCTTCTTCGGCAGCTGGTTCGAGCGGGCCGGTTATTGAGATGGTGAGTTCGTCTCTTCTTCGTTCAAAGCGTTCTTCTTCGTATGCTCCTCTTACCACTGAAGATCCAGGACCTTCGAGTGATGCATTTATGGTGGGTCTACCTCCAGCTTGGGTGGATGATTCTGAAGAAATAACTGTTAATATACAGAAAATTCGTAGGAAGATGGCAGAGTTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGATGAGCATACGATTGAGGCACTTACACTAGAGATTACCAATCTTTTGAAAACTTCCGAGAAGAGGTTGAAGAAAATTTCTAGTAATGGGTCCTCAGAGGATATTAACATCAGAAAAAATGTCCAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCGATGGACCTTCGTAGAAGACAGTCAATGTATCTGAAACGTCTGCAGCAGCAAAAGGAGGGACACGATGGAATTGATTTGGAGATAAATTTGAATGGAAACAGAACTCTCCAGGAGGATGATGGATATGATGAATTTGGAGCCAATGAAAACCAAACGATGACATTAGATGGGCAGCACATTCAGGGAAGGGAGAAAGAGATTAAACAGGTTGTGAAATCGGTAAATGAGCTCGCCCAAATTATGAAGGATCTCTCAACCCTTGTTATAGACCAGGGTACCATTGTCGATAGAATTGACCACAATATTCAGAATGTTGCTGCTTCAGTTGAAGAGGGCTTTAAACAGCTTCAGAAGGCAGAGAAGAGTCAGAAGGATGGAGGAATGGTGAAATGTGCAACAGTGCTTGTTATTATGTGTTTCATAATGTTGGTTCTGTTGATACTGAAGGAGATAATCATGTAA 960 42.5 MATRNRTAQFKRHRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLRSKRSSSYAPLTTEDPGPSSDAFMVGLPPAWVDDSEEITVNIQKIRRKMAELVKAHSKALMPSFADGKEDEHTIEALTLEITNLLKTSEKRLKKISSNGSSEDINIRKNVQRSLATELQNLSMDLRRRQSMYLKRLQQQKEGHDGIDLEINLNGNRTLQEDDGYDEFGANENQTMTLDGQHIQGREKEIKQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAASVEEGFKQLQKAEKSQKDGGMVKCATVLVIMCFIMLVLLILKEIIM 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4920208 4924038 - CrPI670011_09g005240.1 Cre09g0524 507192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0524 319 FunFam Syntaxin-43 72 277 - -
Cre09g0524 319 PANTHER SYNTAXIN 82 305 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cre09g0524 319 MobiDBLite consensus disorder prediction 1 33 - -
Cre09g0524 319 SUPERFAMILY t-snare proteins 71 278 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cre09g0524 319 SMART tSNARE_6 217 285 IPR000727 -
Cre09g0524 319 SMART SynN_4 66 181 IPR006011 GO:0016020(InterPro)
Cre09g0524 319 CDD SNARE_syntaxin16 226 284 - -
Cre09g0524 319 Gene3D - 72 277 - -
Cre09g0524 319 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 223 285 IPR000727 -
Cre09g0524 319 ProSitePatterns Syntaxin / epimorphin family signature. 229 268 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cre09g0524 319 Pfam SNARE domain 259 311 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1836 Cre-Chr2:31639383 Cre09g0524 Cre-Chr9:4920208 2.80E-102 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0524 K08489 - csv:101204192 575.089