Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g0524 | ATGGCGACGAGGAATCGAACTGCACAGTTTAAAAGGCACAGGGACGCCGTGAAGAGCGTCCGTGCACCTTTATCTTCTTCGGCAGCTGGTTCGAGCGGGCCGGTTATTGAGATGGTGAGTTCGTCTCTTCTTCGTTCAAAGCGTTCTTCTTCGTATGCTCCTCTTACCACTGAAGATCCAGGACCTTCGAGTGATGCATTTATGGTGGGTCTACCTCCAGCTTGGGTGGATGATTCTGAAGAAATAACTGTTAATATACAGAAAATTCGTAGGAAGATGGCAGAGTTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGATGAGCATACGATTGAGGCACTTACACTAGAGATTACCAATCTTTTGAAAACTTCCGAGAAGAGGTTGAAGAAAATTTCTAGTAATGGGTCCTCAGAGGATATTAACATCAGAAAAAATGTCCAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCGATGGACCTTCGTAGAAGACAGTCAATGTATCTGAAACGTCTGCAGCAGCAAAAGGAGGGACACGATGGAATTGATTTGGAGATAAATTTGAATGGAAACAGAACTCTCCAGGAGGATGATGGATATGATGAATTTGGAGCCAATGAAAACCAAACGATGACATTAGATGGGCAGCACATTCAGGGAAGGGAGAAAGAGATTAAACAGGTTGTGAAATCGGTAAATGAGCTCGCCCAAATTATGAAGGATCTCTCAACCCTTGTTATAGACCAGGGTACCATTGTCGATAGAATTGACCACAATATTCAGAATGTTGCTGCTTCAGTTGAAGAGGGCTTTAAACAGCTTCAGAAGGCAGAGAAGAGTCAGAAGGATGGAGGAATGGTGAAATGTGCAACAGTGCTTGTTATTATGTGTTTCATAATGTTGGTTCTGTTGATACTGAAGGAGATAATCATGTAA | 960 | 42.5 | MATRNRTAQFKRHRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLRSKRSSSYAPLTTEDPGPSSDAFMVGLPPAWVDDSEEITVNIQKIRRKMAELVKAHSKALMPSFADGKEDEHTIEALTLEITNLLKTSEKRLKKISSNGSSEDINIRKNVQRSLATELQNLSMDLRRRQSMYLKRLQQQKEGHDGIDLEINLNGNRTLQEDDGYDEFGANENQTMTLDGQHIQGREKEIKQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAASVEEGFKQLQKAEKSQKDGGMVKCATVLVIMCFIMLVLLILKEIIM | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 4920208 | 4924038 | - | CrPI670011_09g005240.1 | Cre09g0524 | 507192 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g0524 | 319 | FunFam | Syntaxin-43 | 72 | 277 | - | - | |
Cre09g0524 | 319 | PANTHER | SYNTAXIN | 82 | 305 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cre09g0524 | 319 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cre09g0524 | 319 | SUPERFAMILY | t-snare proteins | 71 | 278 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cre09g0524 | 319 | SMART | tSNARE_6 | 217 | 285 | IPR000727 | - | |
Cre09g0524 | 319 | SMART | SynN_4 | 66 | 181 | IPR006011 | GO:0016020(InterPro) | |
Cre09g0524 | 319 | CDD | SNARE_syntaxin16 | 226 | 284 | - | - | |
Cre09g0524 | 319 | Gene3D | - | 72 | 277 | - | - | |
Cre09g0524 | 319 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 223 | 285 | IPR000727 | - | |
Cre09g0524 | 319 | ProSitePatterns | Syntaxin / epimorphin family signature. | 229 | 268 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cre09g0524 | 319 | Pfam | SNARE domain | 259 | 311 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1836 | Cre-Chr2:31639383 | Cre09g0524 | Cre-Chr9:4920208 | 2.80E-102 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g0524 | K08489 | - | csv:101204192 | 575.089 |