Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0527 ATGGCTACCGATTCTCATGCCCCTACTCCAAGAGGTCTTCTCTGTAATGCTGGGGCTGGTGCTGCTGCTGGAGTTCTTGCTGCTACGTTTGTTTGCCCTTTGGATGTTATCAAGACGAGATTTCAGGTTCATGGATTGCCAAACATCGGTAAAGGGAGTCTTATAGTTGGTAGTCTGCAACAAATTTTTCAGAAGGAGGGGCTACGTGGAATGTATAGAGGTCTCGCACCTACTGTGCTTGCATTACTTCCTAACTGGGCTGTTTACTTCACAATATATGGGCAGCTTAAAAGCTTTCTTGGCTCTGATGGTGAAAATCGTCAGCTTTCAATAGGTGCTAATATGATGGCTGCTTCTGGTGCTGGGGCTGCTACAACTATTGCAACCAATCCTCTATGGGTAGTTAAGACCAGGCTACAGACACAAGGAATGAAATCTGGTGTGCTACCATATAGAAATACAGTGTCTGCCTTGAGGAGAATAGCCTCTGAAGAAGGCATTCGTGGATTGTACAGTGGGCTTGTGCCTGCTTTGGCTGGTGTAAGTCACGTTGCGATCCAGTTTCCAACATATGAAAAAATAAAAAGTTATTTGGCTAGAAGAGACAATACGACAACGGACAAACTCACCGCACGCGATGTTGCAGTCGCCTCCTCTGTCTCCAAGATATTTGCTTCTACATTGACCTATCCACACGAGGTTGTACGATCCAGGCTTCAGGAACAAGGGTTTCACTCTGAGAAGCGTTATTCTGGGGTAGCCGATTGCGTAAAGAAAGTATTTCAACGAGATGGTCTCCCTGGTTTCTATCGAGGGTGTGCAACCAACCTTCTCAGGACGACGCCTGCTGCTGTCATAACATTTACAAGTTTTGAAATGATACACCGTTTTCTTGTCAACTTATTTCCTCCCGATCCACATCCGCACACAATATGA 936 45.62 MATDSHAPTPRGLLCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLIVGSLQQIFQKEGLRGMYRGLAPTVLALLPNWAVYFTIYGQLKSFLGSDGENRQLSIGANMMAASGAGAATTIATNPLWVVKTRLQTQGMKSGVLPYRNTVSALRRIASEEGIRGLYSGLVPALAGVSHVAIQFPTYEKIKSYLARRDNTTTDKLTARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGFHSEKRYSGVADCVKKVFQRDGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVNLFPPDPHPHTI 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4941293 4944769 + CrPI670011_09g005270.1 Cre09g0527 507195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0527 311 FunFam NAD+ transporter 107 302 - -
Cre09g0527 311 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 1 106 - -
Cre09g0527 311 Gene3D Mitochondrial carrier domain 104 301 IPR023395 -
Cre09g0527 311 Gene3D Mitochondrial carrier domain 1 103 IPR023395 -
Cre09g0527 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 197 IPR018108 -
Cre09g0527 311 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 10 301 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(PANTHER)|GO:0055085(InterPro)
Cre09g0527 311 SUPERFAMILY Mitochondrial carrier 13 293 IPR023395 -
Cre09g0527 311 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085(InterPro)
Cre09g0527 311 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085(InterPro)
Cre09g0527 311 PRINTS Mitochondrial carrier protein signature 218 240 IPR002067 GO:0055085(InterPro)
Cre09g0527 311 PRINTS Mitochondrial carrier protein signature 124 142 IPR002067 GO:0055085(InterPro)
Cre09g0527 311 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085(InterPro)
Cre09g0527 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 99 IPR018108 -
Cre09g0527 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 209 297 IPR018108 -
Cre09g0527 311 Pfam Mitochondrial carrier protein 214 300 IPR018108 -
Cre09g0527 311 Pfam Mitochondrial carrier protein 108 200 IPR018108 -
Cre09g0527 311 Pfam Mitochondrial carrier protein 15 102 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0527 Cre-Chr9:4941293 Cre09g1945 Cre-Chr9:38283890 1.90E-119 dispersed
Cre09g0527 Cre-Chr9:4941293 Cre08g1269 Cre-Chr8:25845082 5.50E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0527 K15115 - csv:101204681 577.015