Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0531 ATGGCTGCCAGAACAACCACCGCCGCCGCCTTCTACTTTCTCATCCTCATCTCCCTTTACATTTCCACTTCCGCCGCCCCCACCGGTTCAGTATGCAGCTCGACTCGAGACCCATCCTACTGCAAATCGGTTCTCCCGAATCAAACCGGCAATGTCTACTCGTACGGACGGTCGTCGTTCAGAAAGTCACTGTCGTCGTCGCAGAAATTCCTCCGGCTGGTGGAGAAATACCTCAGGTCTCGATCGTCGCTGACAGTGCCGGCGGTGAGGGCGCTGGAGGACTGCCAGCTGCTGGCGGGACTGAACATTGATTACTTAACGACGTCGTTCCGGGCGGTGAACTCGACGAGCAGAACGTTGCCGGAGATGAAGGCGGACGACGTGCAGAGTCTGCTGAGTGCGATACTGACGAATCAACAGACTTGTTTGGATGGAATTAAGGCGACGGCGGGTTCTTGGTCGCTCAAAAATGGCCTTTCTCTCCCACTTGCTGCTGACACCAAGCTCTACTCTCTGTCCTTGGCCTTCTTTACCAAAGGTTGGGTTCCAAAGAAGAAGAAAAAACCGACATGGAAAGCCGCCGGAAGACAAGGGGGGTTCAGAAATGGGCGAATGTCACTCAAAATGTCCAGCCGAACCAAAGCGATCTACGAGACGGCGACCCGCCGGAATCTGTTGCAGACCGATGACGGCGGCGACGACCAGATTGCGGTCAGGGACGTCGTCGTTGTCAGTCAAGACGGCAGCGGAAATTTCACCACCATCAATGAGGCGATTGCGGCGGCGCCGAACAACTCTGCTCCGTCCGACGGGTATTTCTTGATCTTCGTGTCGGCCGGAATTTATGAAGAATATGTGTCGATTGCGAAGAACAAGAGGTACTTGATGATGATCGGAGATGGCATTAATCAGACCGTAGTCACCGGTAATCGGAGTGTCGTTGACGGCTGGACCACCTTCAATTCCGCCACGTTTGCGGTGGTTGGACCTGGATTCGTAGCAGTAAACATGACATTCAGAAACACCGCCGGCGCCATAAAGCATCAAGCCGTAGCCGTCCGGAATGGCGCCGACTTATCAACATTCTACCTCTGCAGCTTCGAAGCCTACCAAGACACCTTATACACCCATTCCCTCCGCCAATTCTACCGCGACTGCGACATCTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAGAACTGCAACATTTACCCACGCCTCCCGATGTCCAACCAGTTCAACGCCATCACCGCCCAGGGCCGGACCGACCCAAATCAGAACACCGGCACCTCCATCTACAACTGCCGAATCACGGCAGCCGACGATCTGGCCAACAACAGCGGCGCCGGCGTCAAGACGTTCCTAGGGCGGCCGTGGAAGGAATACTCAAGGACGGTTTATATGCAGAGCTTTATGGATGATTTGATTGATCCGGAGGGATGGAGGGCTTGGAATGGGGATTTTGCTTTGAACACTTCGTATTATGCGGAATTTGGGAACTTTGGGCCGGGATCTAACACGTCGGAGAGGGTTAATTGGCCGGGATTTCATTTGATTAATGATACCGATGCTGGCAATTTCACGGCGGGGAATTTTGTGTTGGCCGACGATTGGCTGCCGCAGACCGGCGTTCCTTATACCAGCGGCCTCACGGACTAG 1674 54.66 MAARTTTAAAFYFLILISLYISTSAAPTGSVCSSTRDPSYCKSVLPNQTGNVYSYGRSSFRKSLSSSQKFLRLVEKYLRSRSSLTVPAVRALEDCQLLAGLNIDYLTTSFRAVNSTSRTLPEMKADDVQSLLSAILTNQQTCLDGIKATAGSWSLKNGLSLPLAADTKLYSLSLAFFTKGWVPKKKKKPTWKAAGRQGGFRNGRMSLKMSSRTKAIYETATRRNLLQTDDGGDDQIAVRDVVVVSQDGSGNFTTINEAIAAAPNNSAPSDGYFLIFVSAGIYEEYVSIAKNKRYLMMIGDGINQTVVTGNRSVVDGWTTFNSATFAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNGADLSTFYLCSFEAYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMSNQFNAITAQGRTDPNQNTGTSIYNCRITAADDLANNSGAGVKTFLGRPWKEYSRTVYMQSFMDDLIDPEGWRAWNGDFALNTSYYAEFGNFGPGSNTSERVNWPGFHLINDTDAGNFTAGNFVLADDWLPQTGVPYTSGLTD 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4970996 4974651 - CrPI670011_09g005310.1 Cre09g0531 507199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0531 557 Pfam Plant invertase/pectin methylesterase inhibitor 30 175 IPR006501 GO:0004857(InterPro)
Cre09g0531 557 Gene3D - 236 555 IPR012334 -
Cre09g0531 557 FunFam Pectinesterase 235 555 - -
Cre09g0531 557 Pfam Pectinesterase 242 539 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre09g0531 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 179 IPR035513 -
Cre09g0531 557 SUPERFAMILY Pectin lyase-like 237 554 IPR011050 -
Cre09g0531 557 FunFam Pectinesterase 29 179 - -
Cre09g0531 557 PANTHER PECTINESTERASE 10 546 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre09g0531 557 SMART PMEI_2 22 176 IPR006501 GO:0004857(InterPro)
Cre09g0531 557 CDD PMEI-like_3 30 178 - -
Cre09g0531 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 179 IPR035513 -
Cre09g0531 557 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1676 Cre-Chr5:28047639 Cre09g0531 Cre-Chr9:4970996 3.80E-07 dispersed
Cre05g2382 Cre-Chr5:35362266 Cre09g0531 Cre-Chr9:4970996 2.80E-150 dispersed
Cre09g0531 Cre-Chr9:4970996 Cre09g2047 Cre-Chr9:39579314 3.20E-106 dispersed
Cre09g0531 Cre-Chr9:4970996 Cre09g0532 Cre-Chr9:4994228 1.90E-111 tandem
Cre02g0451 Cre-Chr2:1773530 Cre09g0531 Cre-Chr9:4970996 4.30E-159 transposed
Cre11g1871 Cre-Chr11:30372525 Cre09g0531 Cre-Chr9:4970996 2.00E-171 transposed
Cre06g1255 Cre-Chr6:6464256 Cre09g0531 Cre-Chr9:4970996 3.30E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0531 K01051 - csv:101205321 1008.44