Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0532 ATGTTTGGCCTCAAAAACAGAGCTCAAATCCCTTCAAATCCCACCTCCATTTCCACCATTTCCACATTCTTCTTCATTTTCTTCCTCTTCTCCTTCAAACCCATTTCTTCAAATCCCCAAATCCACCAAACCGCTCGATCCCTTTGCAATGGCACTCTGTTTCCAAACCTCTGTTTCTCAAAGCTCTCTTCTTTTCCCCAATTGGCTTCCCTCTCGCCGCAAAAGCTCGCCGGCAGCGCCCTCAACTTCACTGCCCGCGAGGTCCTCGGTGCCTACGCCAGTTGCACCAAGCTCAAGACTCACCTTTACTGTGGCCTGAATCCCACGGACCGTCGGGCCCTCGACGACTGTCTTGAGCTTCTCGACGGCAGCATTGCCGAGCTCAAAGCTTCGATTTCAGATCTAGCGCCGCCGCAGTCCGCTGCCCGTCACTCCCATGATCTGTTGACATTGGTCAGCGCCGCCATGACTAACCACCGGACTTGTGTTGATGGGTTTTATAATAGTTCTGGGATTGTGAGGAGACGGGTGGAGCAGTATCTGGGGAAAATTGGACAGCATTTAAGTATTGATTTGGCGATGTTGAAGAAAATCCCTGGAGTTAATAGGGGTGCGGCGGCAGGGGAGGTGTTGCCGGAGTATGGGGCGGTGAAAGGTGGGTTTCCGAAGTGGGTTTCGGTTAAGGATCGGAGATTGTTGCAGGCGGCGGTGAATGAGACTAATTTTAATTTGGTGGTGGCGAAGGATGGCTCTGGGAATTTCACCACTGTCGGTGAGGCCGTCGCCGCCGCTCCGAATTCGAGCACCACCAGGTTTGTAATATACATAAAAGCAGGGGCGTATTTTGAGAACGTGGAAATAGAAAGGGCAAAGGCAAACTTGATGTTTATCGGCGACGGCATCGGAAAGACGCTGATAAAAGGTGACCGGAACGTCGTAGACGGCTGGACTACTTTCCGATCAGCCACCGTGGCGGTGGTTGGCACCGGGTTCATAGCAAAAGGCATAACATTTGAAAACTACGCGGGTCCAAGCAAGCACCAAGCCGTAGCCTTACGAAGCAATTCCGACTTCTCTGCATTTTACCAATGTAGCTTCGTTGGCTATCAAGACACTCTCTACGTTCACTCTCTCCGTCAATTCTACCGCGAATGCGATATCTATGGTACCATCGACTTTATCTTTGGTAACGCTGCCGTCGTTTTCCAAAATTGCAACCTCTATGCTCGAAAACCCAACCCTAACCAACGCAACATATTCACTGCCCAAGGTCGTGAGGACCCTAACCAAAACACAGGAATCTCAATCCTCAATTGTAAGGTTGAAGCCGCTGCCGATCTAATCCCCGTTCTTTCCTCGTTCAAAACTTACTTGGGCCGACCTTGGAAGTTGTACTCGAGGACGGTTTTTCTCCGGTCGTTTATTGGCCAGTTGGTTGACCCGGCCGGGTGGCTTGAGTGGAACGGGACGTTTGCGTTGGATACTTTGTATTATGGGGAGTATTTGAACCGTGGGCCCGGTTCGAATGTGACTGGACGAGTTACTTGGCCTGGGTATCGGGTCATTGCTAACGCAACGGAAGCGAGCCAGTTTACGGTTGAGGGGTTTATACAGGGTAGCTCGTGGTTGAACTCGACCGGGATTCCTTTCTTCTCCGGTTTGGCTTGA 1668 51.14 MFGLKNRAQIPSNPTSISTISTFFFIFFLFSFKPISSNPQIHQTARSLCNGTLFPNLCFSKLSSFPQLASLSPQKLAGSALNFTAREVLGAYASCTKLKTHLYCGLNPTDRRALDDCLELLDGSIAELKASISDLAPPQSAARHSHDLLTLVSAAMTNHRTCVDGFYNSSGIVRRRVEQYLGKIGQHLSIDLAMLKKIPGVNRGAAAGEVLPEYGAVKGGFPKWVSVKDRRLLQAAVNETNFNLVVAKDGSGNFTTVGEAVAAAPNSSTTRFVIYIKAGAYFENVEIERAKANLMFIGDGIGKTLIKGDRNVVDGWTTFRSATVAVVGTGFIAKGITFENYAGPSKHQAVALRSNSDFSAFYQCSFVGYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVFQNCNLYARKPNPNQRNIFTAQGREDPNQNTGISILNCKVEAAADLIPVLSSFKTYLGRPWKLYSRTVFLRSFIGQLVDPAGWLEWNGTFALDTLYYGEYLNRGPGSNVTGRVTWPGYRVIANATEASQFTVEGFIQGSSWLNSTGIPFFSGLA 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4994228 5000422 + CrPI670011_09g005320.1 Cre09g0532 507200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0532 555 SUPERFAMILY Pectin lyase-like 241 553 IPR011050 -
Cre09g0532 555 FunFam Pectinesterase 237 554 - -
Cre09g0532 555 CDD PMEI-like_3 47 200 - -
Cre09g0532 555 Pfam Plant invertase/pectin methylesterase inhibitor 46 194 IPR006501 GO:0004857(InterPro)
Cre09g0532 555 PANTHER PECTINESTERASE 21 545 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre09g0532 555 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Cre09g0532 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 200 IPR035513 -
Cre09g0532 555 Pfam Pectinesterase 243 539 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre09g0532 555 NCBIfam pectinesterase inhibitor domain 20 197 IPR006501 GO:0004857(InterPro)
Cre09g0532 555 Gene3D - 237 554 IPR012334 -
Cre09g0532 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 199 IPR035513 -
Cre09g0532 555 SMART PMEI_2 40 194 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1078 Cre-Chr5:10103828 Cre09g0532 Cre-Chr9:4994228 2.60E-133 dispersed
Cre07g1788 Cre-Chr7:33318648 Cre09g0532 Cre-Chr9:4994228 1.50E-130 dispersed
Cre09g0532 Cre-Chr9:4994228 Cre09g2465 Cre-Chr9:43976047 2.90E-139 dispersed
Cre09g0531 Cre-Chr9:4970996 Cre09g0532 Cre-Chr9:4994228 1.90E-111 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0532 K01051 - csv:101205557 995.727