Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0581 ATGGATGAAAACACAGGCATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGTTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAGGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATACTAACAATAATAATCATGATGCATGA 477 44.44 MDENTGMSERLVEFKYDFSGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHDA 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5471554 5472030 - CrPI670011_09g005810.1 Cre09g0581 507249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0581 158 SUPERFAMILY Histone-fold 46 155 IPR009072 GO:0046982(InterPro)
Cre09g0581 158 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 49 113 IPR003958 -
Cre09g0581 158 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cre09g0581 158 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Cre09g0581 158 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cre09g0581 158 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 40 148 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cre09g0581 158 ProSitePatterns NF-YB/HAP3 subunit signature. 80 96 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g0581 158 FunFam Nuclear transcription factor Y subunit B-3 40 158 - -
Cre09g0581 158 Gene3D Histone, subunit A 41 158 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1968 Cre-Chr3:36715922 Cre09g0581 Cre-Chr9:5471554 1.20E-30 dispersed
Cre06g2378 Cre-Chr6:31696333 Cre09g0581 Cre-Chr9:5471554 5.70E-12 dispersed
Cre09g0581 Cre-Chr9:5471554 Cre10g0657 Cre-Chr10:6228589 3.70E-39 dispersed
Cre09g0581 Cre-Chr9:5471554 Cre02g1703 Cre-Chr2:30118535 5.50E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54313 PF00808 CBFD_NFYB_HMF 6.70E-27 CL0012 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0581 K08065 - csv:101204763 275.018