Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0582 ATGGGAATCTCTAACATTACAGGTGAAATTCATCATCCAAACTTGTCTTCAGGCAACAATGTGGAAGATCAATTAGAAGAAGTTGAACAAAACAATAATCAACATCAACTTCTTAATCACTTCCTCTATGGCTCTCCCAATGGAGATCAAACCAACTCCCATGGCTCATCTAATTCACTTGATCCCCACCAACAAAGAGTTAAGAAGAAGCGAAATCTTCCCGGCACTCCAGATCCAAATGCTGAAGTTATTGCTCTATCACCAACAACCCTAATGGCTAGAAATAGGTTTGTGTGTGAGATTTGCAACAAGGGGTTTCAAAGAGATCAAAACCTTCAATTGCATAGGAGAGGCCACAACCTGCCATGGAAACTCCGGCAAAGAACCGGCACCGAAGTGAAGAAAAGGGTCTATGTGTGCCCCGAACTGACATGCGTTCATCACAACCCGGCCCGAGCTCTCGGCGATCTTACCGGAATTAAGAAGCATTTTAGTAGAAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAATGCTCCAAGAAATATGCAGTTCAATCTGATTTGAAAGCTCATCAAAAGACTTGTGGCACTAGGGAATACAAATGTGATTGTGGAACTCTATTTTCCAGAAGGGACAGCTTCATCACCCACAGAGCCTTTTGCAATGCATTAACAGAAGAAAACAACAAACTAAAGCAAGGAATTCTCAATAATAATAATAATAATGATGATAACATAGAACCAATCTCAATTATCTCCACTCCAAAACTCCCTCCTTTTGGTACATCAATCATCCCTGAATTCAACCCTTATGATCAAAAAAACCCTTTTAAATCCCTCCCCCAAGAACTCAGCAACTCGGCCCCGGCCACCGGTGCACCTGGAGGCTTGTTCATGGTCGGACCCCGAAGCAGCAACAACTCTTCTTCTTTTTCAAGCCTTAAGCTCAGCTCCACCAGCTCTTCGCGCTTTAGTTGCCTTTATGATAGTAAAAATGGTTGCCTTCAGGATTCTGGGTCGGCAACAGCAGCATTGGTAACGTCGGCCACCGCCTTGTTACAGAAAGCTGCGCAAATAGGAGCAACGACAAGCTCTGTTGGTGTTCTGAAGTCACCATTGTTGGAAATACCTCATTCTGATGATCAAGCAGACATGGTAGGGATGAATATGGGAATGTACGGACACATGATGATGATGATGAAAGAACAAGAGAATTGTAGTAGCAACAACTCAAGTTTTGTCGTCCACGAAAAGGGCCAGTGGCGACCAATGTCGAGATTTTCCGGTGGCAATAACGGTGGCGAAGAGAGTCAGATGATGACTTTGGATTTGTTGGGAGAAAGAGGGTGGAGGCTGAGGCAATTGCAGGGAGATGAAAGCCACCATCACCAGCAGGAGATGATGCCAATTATGAAGCATTTAGAGATGCACAACTTTCGTGGGGATTCAAATGTTGACAAATCTATATTTGAGTATTGA 1479 43.68 MGISNITGEIHHPNLSSGNNVEDQLEEVEQNNNQHQLLNHFLYGSPNGDQTNSHGSSNSLDPHQQRVKKKRNLPGTPDPNAEVIALSPTTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTGTEVKKRVYVCPELTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHQKTCGTREYKCDCGTLFSRRDSFITHRAFCNALTEENNKLKQGILNNNNNNDDNIEPISIISTPKLPPFGTSIIPEFNPYDQKNPFKSLPQELSNSAPATGAPGGLFMVGPRSSNNSSSFSSLKLSSTSSSRFSCLYDSKNGCLQDSGSATAALVTSATALLQKAAQIGATTSSVGVLKSPLLEIPHSDDQADMVGMNMGMYGHMMMMMKEQENCSSNNSSFVVHEKGQWRPMSRFSGGNNGGEESQMMTLDLLGERGWRLRQLQGDESHHHQQEMMPIMKHLEMHNFRGDSNVDKSIFEY 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5495427 5498706 + CrPI670011_09g005820.1 Cre09g0582 507250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0582 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
Cre09g0582 492 SUPERFAMILY beta-beta-alpha zinc fingers 96 194 IPR036236 -
Cre09g0582 492 MobiDBLite consensus disorder prediction 40 62 - -
Cre09g0582 492 FunFam protein indeterminate-domain 12-like 76 144 - -
Cre09g0582 492 Coils Coil 18 38 - -
Cre09g0582 492 SMART c2h2final6 97 119 IPR013087 -
Cre09g0582 492 SMART c2h2final6 138 168 IPR013087 -
Cre09g0582 492 SMART c2h2final6 173 193 IPR013087 -
Cre09g0582 492 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 172 196 - -
Cre09g0582 492 Pfam Zinc finger, C2H2 type 97 119 IPR013087 -
Cre09g0582 492 FunFam protein indeterminate-domain 5, chloroplastic-like 151 230 - -
Cre09g0582 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 201 IPR013087 -
Cre09g0582 492 Gene3D Classic Zinc Finger 152 231 - -
Cre09g0582 492 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Cre09g0582 492 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 199 239 - -
Cre09g0582 492 Gene3D Classic Zinc Finger 75 142 - -
Cre09g0582 492 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 54 460 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre09g0582 492 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 134 168 - -
Cre09g0582 492 MobiDBLite consensus disorder prediction 40 81 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1971 Cre-Chr3:36732042 Cre09g0582 Cre-Chr9:5495427 3.10E-88 dispersed
Cre08g1467 Cre-Chr8:27543014 Cre09g0582 Cre-Chr9:5495427 5.00E-81 dispersed
Cre09g0582 Cre-Chr9:5495427 Cre10g2152 Cre-Chr10:36064706 5.40E-81 dispersed
Cre09g0582 Cre-Chr9:5495427 Cre02g1304 Cre-Chr2:15680288 4.40E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54314 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0582 - - - 0.0