Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre09g0604 | ATGGAATCGGCCGCTAAGACTAAGCATTCTCAAATCACTCACGGTCACCGTAACAATGGCGGACTTGGCGCACTCGAATTCCATATTCTGATCCTACGGCCATCGTTTCAACAACACCAAAGTTTCCTCCTCCATTCCTTCGCCTACAAGGCTTCATTCTCTTCAACATTTCAACTCCCTCAGATATTTCTTAGCTTACCATTTGATTCCTCCCTTTTGGACTCCTCTTCTCTCGATTCTTTTGGCGGTAGAGATAAGTGTGCGCTGAGGACTTGCCCATTGGCTTTGAAAGCAGACCCCGAAGAGCATCGTGTCGCATTGTTTGTATTACTTCTCTGTGCTTGTATTGTAATTGGGCATCTTCTTGAGAAAAGTCGTTGGATAAATGAATCAGTCACTGCCATTTTCATTGGTCTTTTCACTGGAACTCTCATCTTATTAACAACCAAAGGCACAAACTCACGTATCCTAGTGTTTAGTGAAGAACTTTTCTTCACTTATGTTCTTCCACCAATTATTTTTAATGCCGGGTTTCAGGTGAAAAAGAAACAGTTCTTTCGAAACTTTATAACGATCATGTTGTTTGGGGCAGTTGGTACTGTGATCTCTTTTTTCATCATATCACTAGGTTCACTCCATTTATTCAAGAAATTTGGTATTGGCTTCTTAGACGTGGGTGATTATTTTGCCCTCGGAGCAATCTTATCAGCGACAGATAGTGTTTGCACCTTGCAGGTGCTTAATCAGGATGAGACTCCTTTACTGTATAGTCTAGTCTTTGGTGAAGGTGTTGTTAATGATGCTACTTCTGTCGTATTTTTCAAAGCAATCCAGAGATTTGACCTCTCTCACATGACCTCATCCAACGGCATTCAGCTTCTTGGAAATTTTTTCTATTTATTTTTTACGAGCACCTTGCTGGGAGCGATTGACTGTTATTTGCTTTTTGATCTTGTGAGCAACGGTGGGTTCCGAGGGAGATTTCCAGTTGGGTTGTCCAGTGCATACATCATAAAGAAGCTGTACTTTGCCAGGCACTCAACTGATCGGGAGGTTGCTTTGATGATTTTAATGCCTTACCTTTCATATATGACTGCTGAATTGTGCAATCTAAGTGGTATTCTTACCATGTTCTTTTGTGGGATTGTCATGTCTCATTACACTTGGCATAATGTGACTGAAAGTTCACGAGTGACCACCAAGCATACTTTTGCAACATTCTCGTTTGTTTCAGAGATTTTCATCTTTCTATATGTTGGTATGGATGCCTTGGATATTGAGAAGTGGAAAGTTGTTGGCCAAAGGCCTTGGACATCGGCTGGAGTGAGTCTAATACTGCTCGGTTTAGTCCTTGTTGCGAGAGCAGCTTTTGTATTTCCACTTTCCTTTATATCGAACTTGACTAGAAAATCTCAGACTGACAAAATTGGGTTTAAGCAGCAGGTTACAATTTGGTGGGCTGGGCTCATGAGGGGTGCTGTATCTGTGGCCCTTGCTTATAATCAGTTTACGAGGTCAGGGCACACGCAACTACAAGGGAATGCGATCATGATTACTAGCACAATCACAATTGTTCTCATCACTAATGTGGTATTTGGACTATTAACTAAGCCTATTGTAAGGTACATGCTTTCACTGCATGATAAACGAACAGACGGCATAATTGTAACAGATTCTCCACTTAAGTCGCTGAATGACCCTCTTCTGCCTGGTGTTGAAGATAATGAATCTGATGCCGGAGGATCGAACATTCCCCGTCCTACCAGCTTACGTATGATGTTGACAACTCCAACTAGTTCTGTCCATTACTATTGGCGGATGTTCGATGATCGATGTATGCGTCCTGTTTTTGGTGGAAGAGGTTTTGTACCTTTCATCCCCGAGATGAAGTTGGAGTGGATTTTAAATTATATTGCTGAGTTTCAATCTACAATATTGCTTGTTGTTGGAGGGATACCCCTTCAGGGATGCTTAATGTTGGCGCCAAAGAAGAACTCCGCAAAGAACGAAGAACTCCGTCTTTGTAATGGAATTGCAAAGAGAGATAATTGTATTCCGTCGGGGGAGAGGAAATCTTCGCTACATTACGCCATGGATTTCCTATTTCATCAGGATACTTCCGCCAAGAACTCGGTCAACATTTGGATTCCTTCCACTGCAAGATTTCTGAGTTTCTGGATCTTTTCTCTCTTTTGTGTTTCTGAGGCAGACAATTCCAGACTGAGCTCTTGGCTTCATGGATCCAATGGCTTTTCTGTCGCAATTGGGGCTGAAAGCAGACCGGGAAGCGGCGCACTTCACGGAATTTTCACTGGAATTATCGTTCTCCTAACGACTAGAGGAAAAAGTTCTCACATCCTAGAATTCAATGAACAGCTTTTCTTCATTTACCTTCTTCCACCCATAATATTTAATGCTGGGTTTCAGGTGAAGAAGAAACAGTTCTTTCGCAACTTTCTGGCAATCTTATTGTTTGGTGCTTTTGGAAGTGTGATATCATTCTTCATCATATCACTAGGTTCCCTCAACTTATTCAAGATATTGGATGTTGGCTCAGTAGACACGCAGGATTGTTTTGCACTTGGAGCAATCTTAACAGCGACAGATAGTGTTTGCACCTTGCAAGTTCTTAAACAAGATGAGACACCTTTACTTTATAGTCTGGTCTTTGGGGAAGGTGTGGTCAATGATGCTACCTCAGTTGTACTCTTCAATGCAATCAAGAAATTTGACCTCTCTCACATTACTTCAACAAATGCCATTCGGTTAGCTGGAAGTTTCTTAGGGTTGTTCTTGGGAAGCACACTACTGGGAATTGCAGTTGGGCTGCTATGTGCATTTATCATAAAGAAGCTATCCTTAGGCAGGCACCCTACAGATTATGAAGTTGTTCCGATGATTTTGATGGCCTACCTTTCATATATGATTGCTGAATTGTTGCTTCTTAGTGGTATTCTTAGCGTGTTCTTTTGTGGGATTGTCATGTCTCACTACACATCTTGGAATAATAGGACTGACAGTACCAATAATGGGATTGGCAGTTCCAGACTAATACCACACCATGCTTTTGCGACATTATCTTTCGTAGCAGAGATCTTCATCTTCCTTTATGTTGGTATGGATGCATTGGATATTGAGAAGTGGAATGTTGTTAGAGAAAGGCCTGGGAAATCAGTTGGAGCAAGTGTTATACTGCTAGGCCTTGTTCTTGTTGGAAGAGCAGCTTTTGTATTCCCACTCTCTTTCGTTTCCAACTTGACCAGAAAGCACAAAAAAGACCATATTGGGTTTAAACAACAGTTTACGATTTGGTGGGCTGGACTCATGAGAGGTGCTGTATCAGTGGCACTTGCCTATCATCAGTTTCCAAGGTCAGAAGAAAAGGAACAAGGGGCTTCGATAATGATAACTAGCACCATCATAATTGTTCTCTTCACAAACGTGGTGTTTGGATTGTTGACCAAGTCCATAGTAAGACGAATGATTCCTCGAATTAACCACGAGTCAAGACATTTATATTTTCCCTTACTTCAAGAATTGAGTGATTCGTTGCTTGATGAGAATGATATTGAATCCGACACCAACGAACTTAACCAATTTCCTCCAGACAGTTTCATGTCGTTTATGAAATCTCCAACTCAATGTCTCCATTATTATTGGTACAAGTTTGATGATTGCTTCATGCGTCCTGTTTTTGGAGGGAGTGAATCTTCATTGGAGCATCTCACTCCCTCAGCTTCTCCCTGA | 3747 | 41.58 | MESAAKTKHSQITHGHRNNGGLGALEFHILILRPSFQQHQSFLLHSFAYKASFSSTFQLPQIFLSLPFDSSLLDSSSLDSFGGRDKCALRTCPLALKADPEEHRVALFVLLLCACIVIGHLLEKSRWINESVTAIFIGLFTGTLILLTTKGTNSRILVFSEELFFTYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAVGTVISFFIISLGSLHLFKKFGIGFLDVGDYFALGAILSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVFFKAIQRFDLSHMTSSNGIQLLGNFFYLFFTSTLLGAIDCYLLFDLVSNGGFRGRFPVGLSSAYIIKKLYFARHSTDREVALMILMPYLSYMTAELCNLSGILTMFFCGIVMSHYTWHNVTESSRVTTKHTFATFSFVSEIFIFLYVGMDALDIEKWKVVGQRPWTSAGVSLILLGLVLVARAAFVFPLSFISNLTRKSQTDKIGFKQQVTIWWAGLMRGAVSVALAYNQFTRSGHTQLQGNAIMITSTITIVLITNVVFGLLTKPIVRYMLSLHDKRTDGIIVTDSPLKSLNDPLLPGVEDNESDAGGSNIPRPTSLRMMLTTPTSSVHYYWRMFDDRCMRPVFGGRGFVPFIPEMKLEWILNYIAEFQSTILLVVGGIPLQGCLMLAPKKNSAKNEELRLCNGIAKRDNCIPSGERKSSLHYAMDFLFHQDTSAKNSVNIWIPSTARFLSFWIFSLFCVSEADNSRLSSWLHGSNGFSVAIGAESRPGSGALHGIFTGIIVLLTTRGKSSHILEFNEQLFFIYLLPPIIFNAGFQVKKKQFFRNFLAILLFGAFGSVISFFIISLGSLNLFKILDVGSVDTQDCFALGAILTATDSVCTLQVLKQDETPLLYSLVFGEGVVNDATSVVLFNAIKKFDLSHITSTNAIRLAGSFLGLFLGSTLLGIAVGLLCAFIIKKLSLGRHPTDYEVVPMILMAYLSYMIAELLLLSGILSVFFCGIVMSHYTSWNNRTDSTNNGIGSSRLIPHHAFATLSFVAEIFIFLYVGMDALDIEKWNVVRERPGKSVGASVILLGLVLVGRAAFVFPLSFVSNLTRKHKKDHIGFKQQFTIWWAGLMRGAVSVALAYHQFPRSEEKEQGASIMITSTIIIVLFTNVVFGLLTKSIVRRMIPRINHESRHLYFPLLQELSDSLLDENDIESDTNELNQFPPDSFMSFMKSPTQCLHYYWYKFDDCFMRPVFGGSESSLEHLTPSASP | 1248 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 5694866 | 5714619 | + | CrPI670011_09g006040.1 | Cre09g0604 | 507272 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre09g0604 | 1248 | Pfam | Sodium/hydrogen exchanger family | 769 | 1159 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Cre09g0604 | 1248 | Pfam | Sodium/hydrogen exchanger family | 114 | 541 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Cre09g0604 | 1248 | Gene3D | - | 853 | 906 | - | - | |
| Cre09g0604 | 1248 | Gene3D | - | 225 | 276 | - | - | |
| Cre09g0604 | 1248 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 100 | 625 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Cre09g0604 | 1248 | PRINTS | Na+/H+ exchanger signature | 163 | 174 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre09g0604 | 1248 | PRINTS | Na+/H+ exchanger signature | 192 | 200 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre09g0604 | 1248 | PRINTS | Na+/H+ exchanger signature | 232 | 242 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre09g0604 | 1248 | PRINTS | Na+/H+ exchanger signature | 177 | 191 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre03g1911 | Cre-Chr3:36178578 | Cre09g0604 | Cre-Chr9:5694866 | 1.80E-194 | dispersed | |
| Cre06g1300 | Cre-Chr6:6936222 | Cre09g0604 | Cre-Chr9:5694866 | 1.40E-190 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre09g0604 | - | - | - | 0.0 |