Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0697 ATGTTTGCTTCAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGTGTCTCTTCTACCACAAGAGTCCACCCTGATTTCACCTGCTTAAACCCTCTCCTTCCATCTTTTTCTGATGTTCACCACCCTCCACAAAAGCTCAAGAAGAAACGAAGCCTCCCCGGTAACCCAGACCCGGATGCGGAAGTGATAGCGCTTTCGCCGAAAACACTACTAGCAACAAATAGATTTGTGTGTGAGATTTGCAACAAGGGTTTCCAAAGGGATCAAAATTTGCAGTTGCATAGGAGAGGGCACAATTTACCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCCTATGTTTGTCCAGAACCAAGTTGTGTTCATCATCATCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTACTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAATGCTCCAAAGTTTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGGGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACCCATAGAGCTTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCAATTGGCCATGGCTGCCGCCGCGGCCGCTGCCTCGGGTGCCACTGATATCAACATAAACTCATCTTCAACCACCACCGCCGACCAATCGCTCTTTCCTTATGGTAATCACCATCAATTCTCGAACTCGGCACTATCACTACCACCACATCCACCTCTGTCTCAAACCCACATGTCTTTAAACCCTTGGGATCATCCCCAAAACCCTAACCCTAATCACACCCTCCAAATCATTAAGCCAGAGGATTCAAATTCTCATTCTTCCCATTCTCATAATTTTCACCAAATTCCAAATTTGCCCCTCTCCAATTCCTCCTCTGCCAACAACAACCCTTTTGGTCTAATTCAAGACCACCACCACCAAAAGTTAGTCTCATCCTCCTCCTCTTCCATGATAACCTCACCCTTCAGGAACCTCCACGTGTCAGTGCACCCGGGATCAAATGTTGCCACGTCAGCTCACCTATCAGCAACAGCCCTACTCCAAAAGGCAGCGACAGTTGGCGTTGGCGCTGCAAAATCCGGTCACCATCAACCCGAGTCAGTAGGCCACATGACTCACTTCAACATGCAAAACATCCCCGAGTTCGGTCCACCGAATCACATTGAATCACTGAGTCAACTTGATCCTGACTATGCCACGTGGCAGAAGACTGACCGGCTGACCAGGGACTTTCTCGGTCTGACTGGAGATGGGAACAGTGGCGTTGGTGGTGGTGGTGGTTCTGGCGGCAGTGGAGTGGTGCAAGTTAGCATGAGCGTTAAGGATATGCTAACGTATGCAAGTGGATTGGAGATGTTTAAGCCTCACAACAATAATAATAGTAGTAATAATAATTTTGGATATGCGGAGCCAGCTGCCAATGAAACTTGGGGAGATTGTTGA 1530 46.01 MFASTMSNSTSLSEEASVSSTTRVHPDFTCLNPLLPSFSDVHHPPQKLKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAAAAASGATDININSSSTTTADQSLFPYGNHHQFSNSALSLPPHPPLSQTHMSLNPWDHPQNPNPNHTLQIIKPEDSNSHSSHSHNFHQIPNLPLSNSSSANNNPFGLIQDHHHQKLVSSSSSSMITSPFRNLHVSVHPGSNVATSAHLSATALLQKAATVGVGAAKSGHHQPESVGHMTHFNMQNIPEFGPPNHIESLSQLDPDYATWQKTDRLTRDFLGLTGDGNSGVGGGGGSGGSGVVQVSMSVKDMLTYASGLEMFKPHNNNNSSNNNFGYAEPAANETWGDC 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6684159 6687440 + CrPI670011_09g006970.1 Cre09g0697 507365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0697 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Cre09g0697 509 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 153 177 - -
Cre09g0697 509 MobiDBLite consensus disorder prediction 487 509 - -
Cre09g0697 509 FunFam protein indeterminate-domain 12-like 57 125 - -
Cre09g0697 509 Gene3D Classic Zinc Finger 57 126 - -
Cre09g0697 509 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Cre09g0697 509 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Cre09g0697 509 Gene3D Classic Zinc Finger 147 212 - -
Cre09g0697 509 MobiDBLite consensus disorder prediction 257 329 - -
Cre09g0697 509 MobiDBLite consensus disorder prediction 41 62 - -
Cre09g0697 509 SMART c2h2final6 154 174 IPR013087 -
Cre09g0697 509 SMART c2h2final6 78 100 IPR013087 -
Cre09g0697 509 SMART c2h2final6 119 149 IPR013087 -
Cre09g0697 509 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Cre09g0697 509 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Cre09g0697 509 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 115 149 - -
Cre09g0697 509 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 180 218 - -
Cre09g0697 509 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 448 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1553 Cre-Chr4:34142591 Cre09g0697 Cre-Chr9:6684159 1.20E-88 dispersed
Cre05g1957 Cre-Chr5:31710814 Cre09g0697 Cre-Chr9:6684159 1.20E-84 dispersed
Cre07g1736 Cre-Chr7:32825636 Cre09g0697 Cre-Chr9:6684159 1.70E-30 dispersed
Cre09g0697 Cre-Chr9:6684159 Cre10g2152 Cre-Chr10:36064706 4.10E-84 dispersed
Cre09g0697 Cre-Chr9:6684159 Cre02g1304 Cre-Chr2:15680288 4.30E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54318 PF00096 zf-C2H2 0.0051 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0697 K25870 - csv:101208253 780.785