Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g0697 | ATGTTTGCTTCAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGTGTCTCTTCTACCACAAGAGTCCACCCTGATTTCACCTGCTTAAACCCTCTCCTTCCATCTTTTTCTGATGTTCACCACCCTCCACAAAAGCTCAAGAAGAAACGAAGCCTCCCCGGTAACCCAGACCCGGATGCGGAAGTGATAGCGCTTTCGCCGAAAACACTACTAGCAACAAATAGATTTGTGTGTGAGATTTGCAACAAGGGTTTCCAAAGGGATCAAAATTTGCAGTTGCATAGGAGAGGGCACAATTTACCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCCTATGTTTGTCCAGAACCAAGTTGTGTTCATCATCATCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTACTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAATGCTCCAAAGTTTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGGGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACCCATAGAGCTTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCAATTGGCCATGGCTGCCGCCGCGGCCGCTGCCTCGGGTGCCACTGATATCAACATAAACTCATCTTCAACCACCACCGCCGACCAATCGCTCTTTCCTTATGGTAATCACCATCAATTCTCGAACTCGGCACTATCACTACCACCACATCCACCTCTGTCTCAAACCCACATGTCTTTAAACCCTTGGGATCATCCCCAAAACCCTAACCCTAATCACACCCTCCAAATCATTAAGCCAGAGGATTCAAATTCTCATTCTTCCCATTCTCATAATTTTCACCAAATTCCAAATTTGCCCCTCTCCAATTCCTCCTCTGCCAACAACAACCCTTTTGGTCTAATTCAAGACCACCACCACCAAAAGTTAGTCTCATCCTCCTCCTCTTCCATGATAACCTCACCCTTCAGGAACCTCCACGTGTCAGTGCACCCGGGATCAAATGTTGCCACGTCAGCTCACCTATCAGCAACAGCCCTACTCCAAAAGGCAGCGACAGTTGGCGTTGGCGCTGCAAAATCCGGTCACCATCAACCCGAGTCAGTAGGCCACATGACTCACTTCAACATGCAAAACATCCCCGAGTTCGGTCCACCGAATCACATTGAATCACTGAGTCAACTTGATCCTGACTATGCCACGTGGCAGAAGACTGACCGGCTGACCAGGGACTTTCTCGGTCTGACTGGAGATGGGAACAGTGGCGTTGGTGGTGGTGGTGGTTCTGGCGGCAGTGGAGTGGTGCAAGTTAGCATGAGCGTTAAGGATATGCTAACGTATGCAAGTGGATTGGAGATGTTTAAGCCTCACAACAATAATAATAGTAGTAATAATAATTTTGGATATGCGGAGCCAGCTGCCAATGAAACTTGGGGAGATTGTTGA | 1530 | 46.01 | MFASTMSNSTSLSEEASVSSTTRVHPDFTCLNPLLPSFSDVHHPPQKLKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAAAAASGATDININSSSTTTADQSLFPYGNHHQFSNSALSLPPHPPLSQTHMSLNPWDHPQNPNPNHTLQIIKPEDSNSHSSHSHNFHQIPNLPLSNSSSANNNPFGLIQDHHHQKLVSSSSSSMITSPFRNLHVSVHPGSNVATSAHLSATALLQKAATVGVGAAKSGHHQPESVGHMTHFNMQNIPEFGPPNHIESLSQLDPDYATWQKTDRLTRDFLGLTGDGNSGVGGGGGSGGSGVVQVSMSVKDMLTYASGLEMFKPHNNNNSSNNNFGYAEPAANETWGDC | 509 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 6684159 | 6687440 | + | CrPI670011_09g006970.1 | Cre09g0697 | 507365 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g0697 | 509 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 78 | 100 | IPR013087 | - | |
Cre09g0697 | 509 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 153 | 177 | - | - | |
Cre09g0697 | 509 | MobiDBLite | consensus disorder prediction | 487 | 509 | - | - | |
Cre09g0697 | 509 | FunFam | protein indeterminate-domain 12-like | 57 | 125 | - | - | |
Cre09g0697 | 509 | Gene3D | Classic Zinc Finger | 57 | 126 | - | - | |
Cre09g0697 | 509 | SUPERFAMILY | beta-beta-alpha zinc fingers | 77 | 174 | IPR036236 | - | |
Cre09g0697 | 509 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 80 | 100 | IPR013087 | - | |
Cre09g0697 | 509 | Gene3D | Classic Zinc Finger | 147 | 212 | - | - | |
Cre09g0697 | 509 | MobiDBLite | consensus disorder prediction | 257 | 329 | - | - | |
Cre09g0697 | 509 | MobiDBLite | consensus disorder prediction | 41 | 62 | - | - | |
Cre09g0697 | 509 | SMART | c2h2final6 | 154 | 174 | IPR013087 | - | |
Cre09g0697 | 509 | SMART | c2h2final6 | 78 | 100 | IPR013087 | - | |
Cre09g0697 | 509 | SMART | c2h2final6 | 119 | 149 | IPR013087 | - | |
Cre09g0697 | 509 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 132 | 211 | - | - | |
Cre09g0697 | 509 | Pfam | Zinc finger, C2H2 type | 78 | 100 | IPR013087 | - | |
Cre09g0697 | 509 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 115 | 149 | - | - | |
Cre09g0697 | 509 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 180 | 218 | - | - | |
Cre09g0697 | 509 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 43 | 448 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1553 | Cre-Chr4:34142591 | Cre09g0697 | Cre-Chr9:6684159 | 1.20E-88 | dispersed | |
Cre05g1957 | Cre-Chr5:31710814 | Cre09g0697 | Cre-Chr9:6684159 | 1.20E-84 | dispersed | |
Cre07g1736 | Cre-Chr7:32825636 | Cre09g0697 | Cre-Chr9:6684159 | 1.70E-30 | dispersed | |
Cre09g0697 | Cre-Chr9:6684159 | Cre10g2152 | Cre-Chr10:36064706 | 4.10E-84 | dispersed | |
Cre09g0697 | Cre-Chr9:6684159 | Cre02g1304 | Cre-Chr2:15680288 | 4.30E-89 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54318 | PF00096 | zf-C2H2 | 0.0051 | CL0361 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g0697 | K25870 | - | csv:101208253 | 780.785 |