Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0707 ATGGCGAACAATCATTCCGATACTCCGGCTGATGATTTCCTCGAGCAGATTCTTGGGATTTCCCCTTTTGGTTCGTCGGACCAAGGGTTAACTGGAACTGACGGCGGATTGGCCGGAGCTGCTGCTGCTGCTGCTGCGGCAGCGGCGGCGGCTCAGGGTCAGGCTCCGATGATGCTTCAGCTTAGCTCCGGCGACGGTGGTGGTCATATCGCTACGATTGGGAGTGGTAGTGTCGGTGGAGCTGGGTTTCATGGCGGACCCCCTTTTCCTCTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCCTCTGGAAGTGGAAAGCGGTATTGTGGTGATGTTGTTGATGTTCGAGCTTCGTCTGTAAAAAATGTTTTTCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCCCCACATCCACCAGCAATGCGCCCTAGGGTACGTGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGGATTGCAGAGAGAATTAGGGCTTTGCAGGAGCTTGTTCCGAGTGTCAATAAGACGGATAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTCCTACGTCTCCAAGTGAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCTGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGTAGGAACCAACCAGCATGGGAGAAGTGGTCGAACGATGGTACAGAGAGACAAGTTGCTAAACTCATGGAAGAAAATGTGGGAGCCGCAATGCAATTCCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCGTTGGCTTCAGCGATTTATCACACGCAACCACCTGATAGCTCGAGCGTTGTGAAGCCAGAGAGTAACCCTCCTCCATAG 948 51.79 MANNHSDTPADDFLEQILGISPFGSSDQGLTGTDGGLAGAAAAAAAAAAAAQGQAPMMLQLSSGDGGGHIATIGSGSVGGAGFHGGPPFPLGLSLDQGKSGFLKAEEASGSGKRYCGDVVDVRASSVKNVFQGQQMHATMGAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6830245 6833382 + CrPI670011_09g007070.1 Cre09g0707 507375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0707 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983(InterPro)
Cre09g0707 315 SMART finulus 165 214 IPR011598 GO:0046983(InterPro)
Cre09g0707 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 218 IPR036638 GO:0046983(InterPro)
Cre09g0707 315 Gene3D - 154 216 IPR036638 GO:0046983(InterPro)
Cre09g0707 315 FunFam Basic helix-loop-helix transcription factor 154 216 - -
Cre09g0707 315 Pfam Helix-loop-helix DNA-binding domain 164 209 IPR011598 GO:0046983(InterPro)
Cre09g0707 315 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 100 294 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cre09g0707 315 MobiDBLite consensus disorder prediction 140 163 - -
Cre09g0707 315 MobiDBLite consensus disorder prediction 239 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2023 Cre-Chr2:33718261 Cre09g0707 Cre-Chr9:6830245 2.00E-42 dispersed
Cre06g2093 Cre-Chr6:28704313 Cre09g0707 Cre-Chr9:6830245 1.70E-46 dispersed
Cre07g0390 Cre-Chr7:1632252 Cre09g0707 Cre-Chr9:6830245 3.40E-17 dispersed
Cre09g0707 Cre-Chr9:6830245 Cre09g0809 Cre-Chr9:8075744 7.30E-15 dispersed
Cre09g0707 Cre-Chr9:6830245 Cre03g1905 Cre-Chr3:36090427 1.80E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54320 PF00010 HLH 1.20E-07 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0707 - - - 0.0