Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre09g0734 | ATGTCAATTGTTAATGATTTCTTTGGTAATTACCAAGAAGATTTCTTGTGGAACAATAGTCAGGATGAAAGTTTAATTTCCGGGGAAGAGAATTATTTCAATTACTTGAAAGAGGTGTTGTTTGATGATATTTTTGAGGAGGCGGCCGGAGGAACGACGTCGTCGGATTCGAGTTCTTGTTCATCTCCAGTGATGCAAGTTAAGGAGGAGATTGAGGAAGGGAGTTTTGGTGACGACATCGTTGTGCAGGAAGATGAATCACGTAAGGAGGATAGGGTTTATCGAGGGGTGCGGAGGAGGCCGTGGGGGAAGTACGCGGCCGAGATTAGGGACTCAACGCGACAAGGGGTTAGGGTGTGGTTGGGGACGTTTGATAGCGCCGAAGCGGCTGCGTTGGCGTATGACCAAGCCGCATTTTGCATGAGAGGAGGGTTAGCCACGCTTAACTTTCCGGTCGAGGTTGTACGAGAGTCACTTCGAGAGATGAAGTACCAGTGGGAGGCCGGGTGCTCGCCGGTCTTGGCGCTTAAGCGGCGCCACTCGATACGGAGGAAGAAGATGGCTGAGGTGGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAGCAAACTGTAGTTGTTTTTGAGGATTTGGGTGTAGAATGGGATGTGGTAGCTGAGCTTATTAGAAACGCCATGAAGGAAAGAGGTCTAAGGAAGGCTCCTGGCTGTAGTCGGGTTAACATTAATACAAAGACCCATTGTTTTGATGTTGCTAATAAAACACATCCAAGAAGAAAGCCTGAAGTTGGCTTCACTAGGAGAGATCTCTGTTATTTCAATTGTTTTGATGCTCTTTCGTATAGCTTTTACTTCAAATCAGCAGGCATCATGTTCTTGGGTTGGCCAAAATATTATTGTCGGAGATTCAAATCCTCATACCACACATCTTGTACTAGCAATCAAAACACCACCCAATCTTTTGAACCTCAACCTACTATTGTTAAAACCTCCTCGAATGCATTAGTTGATGATGATACATTTGACTTCTTGCGACGTCATACCCACGCACGACCGCCGCCAACCACAGCCAACCGTCGGCCGTCCGCCTCCCTCCGACCGGCTGCCGATCGTCACTCCACCGCGCCAGCCGTCGGTGAGTTTCTCCTTCCCGTTCTCTCTCTCTCTCTCTCTAAGTTGTCCTCTGTGCAGCGCCTGCCAGCTGCCTTTGCCGCGCGTCGACGCCGCTCTCCGCCGGTTTCGTGTGGATCAATTCTTGCTTGCTTCTCTTTTGCAAGGAGGGAGGCGACTGGAAGTTTGAAAATTTTGCTTTCTAATGAAGGAGGAGATGAAGTTATTGACATAGACAGGAAAACACTATTGTTAGAACCAGAGAATAATATTGAAGGGGGATTGTCAGTTCCGGGAAAGGATAGACCGGTGTTTAGACCTCCAGAGAGAAGATCTCATCTAGGCCTTGATGTCCTTGCAAATGCAAAACGGGGAGGATCTAATGACAATGGATTCAAAGTCCCACAACAAAGTATTGTTTCTTTTGTTTCATCAATGGAGGAAGAGGAGACAATTGAATCATCTGGAGTCACTGATTCAGGAAAAGAAGCTGTTTCACGAAAGCATTATGTTAAAAATAGAAATTATCGGGAAATAGCTTCCAATGATTCAAATGAAGGGAGTACTTCAGCTGAAGGTGGAATAGCTGGAGATTCATTTAAGAATCGTAATTCTAGTGAAACTTCGGATTCTAGTGTTATAACTATGTCATCCAAAAGCACACATGTAAGCAGGTATAGGAGCCCTAGACAAGACTACGATAATCATGATAGAGAGAGAAATTTTTTTGACAATGATAGTAGAAGCAATAACAGGCGGGCGAGACATGGGCACAGTTATGATGGTGATGAGCCTTATCATGGGAGATCTCGGTACCAAAGGGACTATGGCAGGGAAACTGAAAGAAAGAGAAGTAGATATGAAAGTTTGAGAAGAACTCCTGGTAGATCTGATTGGGATGATGGTAGATGGGAATGGGAAGAAACACCACGTAGAGATGGCCGCTCTAACTCTAGTAGGCACCATCAACCTTCACCATCCCCAATGTATGTTGGTGCCTCACCAGATGCTCGGTTAGTTTCTCCATGGTTGGGTGGGAACACTCCTAATTCTACTGGTTATTCTGCTTCCCCTTGGGATCAGATCTCTCCTTCTCCAGTTCCAGTGCGTGCCTCTGGATCTTCAGTAAAGTCATCAAGCTCAAGTTATCATTCTAAAACTCACCATCTTAAATTTTCTTCACGAAGTTCACCTTTGTCTGAGGATTCTCAACAAGATTCTCAGACAGACAAGTATGAGATCAGTGAGAACATGCGTCTGGAGATGGAATACAACTCTGACCGGGCTTGGTATGATAGAGATGAAGGTAATACAATGTTTGATGCTGATAGCTCATCATTTTTCTTTGGAGATGATGCTGCCTTCCAGAAGAAAGAAGCTGAGCTGGCCAAAAGATTGGTCCGTCGAGATGGAACTAAGATGACTCTTGCTCAAAGCAAAAAGCTGTCTCAGCTCACTGCAGATAATGCACAGTGGGAAGACCGACAACTTTTGAGATCGGGAGCTGTTAGGGGTACTGAGGTGCAAACTGACTTTGACGACGAGGAAGAGCGGAAAGTCATTCTTCTTGTCCATGATACGAAGCCTCCTTTCCTTGATGGAAGAGTTGTTTTCACTAAACAAGCAGAACCAATAATGCCAATAAAAGACCCTACATCAGATATGGCTATAATATCACGCAAAGGATCTACATTGGTGAGGGAAATTCATGAGAAGCAAAATATGAACAAGTCACGACAACGCTTTTGGGAGCTTGCAGGCTCTAAACTTGGTGATATCCTTGGTGTTGAAAAAACAGCCGAGCAGATCGATGCAGATACTGCAGCAGTAGGTGATGAAGGTGAGGTTGATTTTAAGGAAGATGCGAAGTTTGCACAACATATGAAGAAGGGGGAAGCAGTGAGTGACTTTGCCAAGTCAAAAACCATAGCACAGCAAAGACAGTATCTTCCTATATATTCCGTCAGAGATGAGCTGCTGCAGGTTATACGTGAAAATCAGGTGGTTGTGGTGGTTGGAGAAACTGGTTCAGGAAAGACCACACAACTGACTCAGTATCTATTTGAGGATGGTTATACTACAAATGGTATTGTTGGTTGCACCCAACCAAGACGTGTGGCAGCAATGAGTGTAGCAAAAAGAGTCAGCGAAGAGATGGAGTGCGAGTTGGGTGATAAAGTAGGCTATGCCATTCGATTTGAGGATGTAACTGGGCCAACAACTATTATTAAGTATATGACTGATGGGGTTCTTCTACGTGAAACTCTCAAAGATTCTGATCTTGAAAAATACCGTGTAATTGTAATGGATGAAGCTCACGAGAGGTCACTTAGCACTGATGTCCTTTTCGGGATCTTGAAAAAGGTGGTTGCTCAACGTCGTGATTTCAAGCTTATTGTGACATCTGCGACTCTTAATGCTCAAAAGTTTTCAAACTTTTTTGGAAGTGTCCCAATTTTTCACATCCCTGGGAGAACATTTCCTGTGAATACTTTGTATAGCAAAACTCCATGTGAAGATTACGTTGAAGCAGCCGTAAAGCAAGCTATGACCATCCATATCACAAGCCCTCCTGGTGACATTCTTATCTTCATGACCGGCCAAGACGAGATCGAAGCAGCCTGTTTTGCCCTTGCAGAGCGTATCGAACAACTCATTTCATCTACAAAGAAGGGGGTGCCCAAACTTTTGATACTGCCCATCTATTCACAGTTGCCAGCTGACTTGCAAGCAAAGATATTCCAGAAAGCTGAAGATGGCGCCCGAAAATGCATTGTTGCGACCAATATTGCTGAGACATCCTTAACGGTTGATGGAATATTTTATGTTATTGACACTGGTTATGGTAAAATGAAAGTGTATAACCCTAGAATGGGTATGGATGCACTACAAGTGTTTCCGGTAAGTCGTGCTGCTGCTGATCAACGTGCTGGACGTGCTGGTAGAACTGGACCTGGTACTTGCTATCGTTTGTACACAGAAAGTGCATATTTAAACGAAATGTTGCCAAGTCCTGTGCCAGAAATCCAAAGAACTAACCTGGGGAATGTTGTTTTGCTGCTTAAATCGCTTAAAGTTGAAAACTTATTGGATTTTGACTTTATGGACCCACCACCGCAGGATAACATTCTCAACTCCATGTACCAGTTGTGGGTATTAGGGGCTCTTAACAATGTAGGAGGTTTGACTGAACTTGGGTGGAAGATGGTTGAGTTTCCATTGGATCCCCCACTTGCCAAAATGCTTTTGATGGGCGAACAACTTGGGTGCCTTGATGAGGTACTAACGATCGTTTCGATGCTTTCAGTACCGTCAGTATTTTTTCGACCCAAAGATCGAGTCGAGGAGAGTGATGCTGCAAGGGAGAGGTTTTTCATACCAGAATCCGACCATTTAACGTTGTATAATGTTTATCAACAATGGAAACAACACCAGTACAGGGGAGATTGGTGCAATGATCATTTCTTGCATGTTAAAGGGCTACGAAAGGCTCGAGAGGTGCGGTCGCAGTTGTTAGACATTTTGAAGACTTTGAAAATACCTTTGACATCTTGTTGGCCAGATACAGATCTTGTGAGAAAGGCTATTTGCTCTGCTTATTTTCACAATGCAGCTAGATTGAAGGGTGTTGGAGAATATGTTAACTGCAGAAATGGGATGCCATGCCATCTTCATCCGAGCAGTGCTCTTTATGGCATGGGATGTACTCCTGATTACGTCGTGTATCACGAATTGATTTTGACGACGAAGGAGTATATGCAGTGTGCGACAGCGGTCGAGCCTCAATGGTTAGCTGAGCTCGGACCAATGTTTTTCTCAGTCAAGGAGTCAGATACATCACTCTTGGAGCATAAGAAAAGGCAAAAAGAAGAGAAAACAGCCATGGAAGAAGAGATGGAGTCGTTAAGAAAGATTCAAGTCGAGTCAGAGAGAGAAAATAAAGAGCGGGAAAAGGAGAAAAGAAGAAGGCAGCAGCAACAAGTTTCTATGCCGGGTTTTCGTCAAGGTTCTGGAACTTATTTAAGACCAAAGAAGCTAGGTCAAAAGACGGCCACAAATCCCTCCGCAATGCTTACTGGTCTTCTCACCAGGAGAGCGAAACTACAGGACGAGCTACGGAATATTGAGAAGCAGGTTTATGACATGGAGACTAATTACCTACAGGATCCAAGCCAATGTGGGAATGTATTGAAAGGTTTTGAAGGATTCCTGTCTGCATCTAAGAGTACTGCTCTTTTGAAGCGGTCTAGGAAGTTTCAGCTTGAAGATAGGCTCTTCTCATTGTCTTCAGTTACCTCCCCTGCTGCTGAAGAGCTTGCAGCTGGACGAGATGATGGGAGATCCGACTTAGGTCCTGGCAGATCTAAAGGTGGAGGCATATATTCCAATGGACAAGGGAAACCGAAAAAGGGAAGACCGGCCCCTAGGGATGCAAAGAGAATGCGACATTCAAGCGAGCAAGATTTCGACTACGATGATGATCCGGACTTGACATTGTGA | 5607 | 44.5 | MSIVNDFFGNYQEDFLWNNSQDESLISGEENYFNYLKEVLFDDIFEEAAGGTTSSDSSSCSSPVMQVKEEIEEGSFGDDIVVQEDESRKEDRVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPVEVVRESLREMKYQWEAGCSPVLALKRRHSIRRKKMAEVEKMEKKMKKKKQTVVVFEDLGVEWDVVAELIRNAMKERGLRKAPGCSRVNINTKTHCFDVANKTHPRRKPEVGFTRRDLCYFNCFDALSYSFYFKSAGIMFLGWPKYYCRRFKSSYHTSCTSNQNTTQSFEPQPTIVKTSSNALVDDDTFDFLRRHTHARPPPTTANRRPSASLRPAADRHSTAPAVGEFLLPVLSLSLSKLSSVQRLPAAFAARRRRSPPVSCGSILACFSFARREATGSLKILLSNEGGDEVIDIDRKTLLLEPENNIEGGLSVPGKDRPVFRPPERRSHLGLDVLANAKRGGSNDNGFKVPQQSIVSFVSSMEEEETIESSGVTDSGKEAVSRKHYVKNRNYREIASNDSNEGSTSAEGGIAGDSFKNRNSSETSDSSVITMSSKSTHVSRYRSPRQDYDNHDRERNFFDNDSRSNNRRARHGHSYDGDEPYHGRSRYQRDYGRETERKRSRYESLRRTPGRSDWDDGRWEWEETPRRDGRSNSSRHHQPSPSPMYVGASPDARLVSPWLGGNTPNSTGYSASPWDQISPSPVPVRASGSSVKSSSSSYHSKTHHLKFSSRSSPLSEDSQQDSQTDKYEISENMRLEMEYNSDRAWYDRDEGNTMFDADSSSFFFGDDAAFQKKEAELAKRLVRRDGTKMTLAQSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTDFDDEEERKVILLVHDTKPPFLDGRVVFTKQAEPIMPIKDPTSDMAIISRKGSTLVREIHEKQNMNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAAVGDEGEVDFKEDAKFAQHMKKGEAVSDFAKSKTIAQQRQYLPIYSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLFEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMECELGDKVGYAIRFEDVTGPTTIIKYMTDGVLLRETLKDSDLEKYRVIVMDEAHERSLSTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALAERIEQLISSTKKGVPKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTELGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRVEESDAARERFFIPESDHLTLYNVYQQWKQHQYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCWPDTDLVRKAICSAYFHNAARLKGVGEYVNCRNGMPCHLHPSSALYGMGCTPDYVVYHELILTTKEYMQCATAVEPQWLAELGPMFFSVKESDTSLLEHKKRQKEEKTAMEEEMESLRKIQVESERENKEREKEKRRRQQQQVSMPGFRQGSGTYLRPKKLGQKTATNPSAMLTGLLTRRAKLQDELRNIEKQVYDMETNYLQDPSQCGNVLKGFEGFLSASKSTALLKRSRKFQLEDRLFSLSSVTSPAAEELAAGRDDGRSDLGPGRSKGGGIYSNGQGKPKKGRPAPRDAKRMRHSSEQDFDYDDDPDLTL | 1868 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 7160025 | 7191009 | + | CrPI670011_09g007340.1 | Cre09g0734 | 507402 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre09g0734 | 1868 | Coils | Coil | 1654 | 1696 | - | - | |
| Cre09g0734 | 1868 | MobiDBLite | consensus disorder prediction | 1651 | 1694 | - | - | |
| Cre09g0734 | 1868 | Pfam | Helicase associated domain (HA2), winged-helix | 1418 | 1443 | IPR048333 | - | |
| Cre09g0734 | 1868 | ProSiteProfiles | AP2/ERF domain profile. | 93 | 151 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cre09g0734 | 1868 | Gene3D | - | 970 | 1194 | IPR027417 | - | |
| Cre09g0734 | 1868 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1029 | 1192 | IPR014001 | - | |
| Cre09g0734 | 1868 | CDD | AP2 | 94 | 152 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cre09g0734 | 1868 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase | 1195 | 1373 | - | - | |
| Cre09g0734 | 1868 | Gene3D | - | 1195 | 1372 | IPR027417 | - | |
| Cre09g0734 | 1868 | SMART | ha2_5 | 1414 | 1504 | IPR007502 | - | |
| Cre09g0734 | 1868 | MobiDBLite | consensus disorder prediction | 594 | 688 | - | - | |
| Cre09g0734 | 1868 | Pfam | Histone acetyltransferase subunit NuA4 | 1727 | 1803 | IPR015418 | GO:0000123(InterPro) | |
| Cre09g0734 | 1868 | SUPERFAMILY | DNA-binding domain | 93 | 153 | IPR016177 | GO:0003677(InterPro) | |
| Cre09g0734 | 1868 | SMART | rav1_2 | 93 | 157 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cre09g0734 | 1868 | CDD | SF2_C_RHA | 1196 | 1361 | - | - | |
| Cre09g0734 | 1868 | FunFam | Pre-mRNA-splicing factor ATP-dependent RNA helicase | 1398 | 1496 | - | - | |
| Cre09g0734 | 1868 | Pfam | DEAD/DEAH box helicase | 1027 | 1177 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
| Cre09g0734 | 1868 | FunFam | Ethylene-responsive transcription factor 2 | 92 | 153 | - | - | |
| Cre09g0734 | 1868 | MobiDBLite | consensus disorder prediction | 1651 | 1726 | - | - | |
| Cre09g0734 | 1868 | Pfam | Helicase conserved C-terminal domain | 1223 | 1353 | IPR001650 | - | |
| Cre09g0734 | 1868 | MobiDBLite | consensus disorder prediction | 568 | 593 | - | - | |
| Cre09g0734 | 1868 | MobiDBLite | consensus disorder prediction | 1802 | 1868 | - | - | |
| Cre09g0734 | 1868 | SMART | ultradead3 | 1017 | 1201 | IPR014001 | - | |
| Cre09g0734 | 1868 | Pfam | AP2 domain | 93 | 143 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cre09g0734 | 1868 | MobiDBLite | consensus disorder prediction | 548 | 703 | - | - | |
| Cre09g0734 | 1868 | Gene3D | AP2/ERF domain | 93 | 154 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cre09g0734 | 1868 | MobiDBLite | consensus disorder prediction | 345 | 369 | - | - | |
| Cre09g0734 | 1868 | PANTHER | ATP-DEPENDENT RNA HELICASE | 969 | 1669 | - | GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0004386(PANTHER)|GO:0005622(PANTHER)|GO:0005681(PANTHER) | |
| Cre09g0734 | 1868 | FunFam | pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 | 972 | 1194 | - | - | |
| Cre09g0734 | 1868 | MobiDBLite | consensus disorder prediction | 721 | 774 | - | - | |
| Cre09g0734 | 1868 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1214 | 1394 | IPR001650 | - | |
| Cre09g0734 | 1868 | SMART | helicmild6 | 1249 | 1353 | IPR001650 | - | |
| Cre09g0734 | 1868 | MobiDBLite | consensus disorder prediction | 721 | 784 | - | - | |
| Cre09g0734 | 1868 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1010 | 1549 | IPR027417 | - | |
| Cre09g0734 | 1868 | Coils | Coil | 183 | 210 | - | - | |
| Cre09g0734 | 1868 | Gene3D | - | 1399 | 1555 | - | - | |
| Cre09g0734 | 1868 | Pfam | Helicase associated domain (HA2), ratchet-like | 1444 | 1503 | - | - | |
| Cre09g0734 | 1868 | PRINTS | Ethylene responsive element binding protein signature | 117 | 133 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cre09g0734 | 1868 | PRINTS | Ethylene responsive element binding protein signature | 94 | 105 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cre09g0734 | 1868 | Coils | Coil | 1727 | 1754 | - | - | |
| Cre09g0734 | 1868 | Pfam | Oligonucleotide/oligosaccharide-binding (OB)-fold | 1561 | 1638 | IPR011709 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre02g1943 | Cre-Chr2:32813280 | Cre09g0734 | Cre-Chr9:7160025 | 2.20E-219 | dispersed | |
| Cre06g2437 | Cre-Chr6:32224469 | Cre09g0734 | Cre-Chr9:7160025 | 1.50E-189 | dispersed | |
| Cre07g0463 | Cre-Chr7:2396133 | Cre09g0734 | Cre-Chr9:7160025 | 1.30E-39 | dispersed | |
| Cre08g1660 | Cre-Chr8:29094864 | Cre09g0734 | Cre-Chr9:7160025 | 3.60E-147 | dispersed | |
| Cre09g0473 | Cre-Chr9:4511431 | Cre09g0734 | Cre-Chr9:7160025 | 1.50E-164 | dispersed | |
| Cre09g0517 | Cre-Chr9:4897286 | Cre09g0734 | Cre-Chr9:7160025 | 2.60E-27 | dispersed | |
| Cre09g0529 | Cre-Chr9:4952714 | Cre09g0734 | Cre-Chr9:7160025 | 1.40E-86 | dispersed | |
| Cre09g0734 | Cre-Chr9:7160025 | Cre10g0753 | Cre-Chr10:7332118 | 4.20E-150 | dispersed | |
| Cre09g0733 | Cre-Chr9:7147622 | Cre09g0734 | Cre-Chr9:7160025 | 1.60E-20 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 54326 | PF00270 | DEAD | 5.70E-08 | CL0023 | Cre | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre09g0734 | K12815 | - | csv:101204563 | 2359.72 |