Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0734 ATGTCAATTGTTAATGATTTCTTTGGTAATTACCAAGAAGATTTCTTGTGGAACAATAGTCAGGATGAAAGTTTAATTTCCGGGGAAGAGAATTATTTCAATTACTTGAAAGAGGTGTTGTTTGATGATATTTTTGAGGAGGCGGCCGGAGGAACGACGTCGTCGGATTCGAGTTCTTGTTCATCTCCAGTGATGCAAGTTAAGGAGGAGATTGAGGAAGGGAGTTTTGGTGACGACATCGTTGTGCAGGAAGATGAATCACGTAAGGAGGATAGGGTTTATCGAGGGGTGCGGAGGAGGCCGTGGGGGAAGTACGCGGCCGAGATTAGGGACTCAACGCGACAAGGGGTTAGGGTGTGGTTGGGGACGTTTGATAGCGCCGAAGCGGCTGCGTTGGCGTATGACCAAGCCGCATTTTGCATGAGAGGAGGGTTAGCCACGCTTAACTTTCCGGTCGAGGTTGTACGAGAGTCACTTCGAGAGATGAAGTACCAGTGGGAGGCCGGGTGCTCGCCGGTCTTGGCGCTTAAGCGGCGCCACTCGATACGGAGGAAGAAGATGGCTGAGGTGGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAGCAAACTGTAGTTGTTTTTGAGGATTTGGGTGTAGAATGGGATGTGGTAGCTGAGCTTATTAGAAACGCCATGAAGGAAAGAGGTCTAAGGAAGGCTCCTGGCTGTAGTCGGGTTAACATTAATACAAAGACCCATTGTTTTGATGTTGCTAATAAAACACATCCAAGAAGAAAGCCTGAAGTTGGCTTCACTAGGAGAGATCTCTGTTATTTCAATTGTTTTGATGCTCTTTCGTATAGCTTTTACTTCAAATCAGCAGGCATCATGTTCTTGGGTTGGCCAAAATATTATTGTCGGAGATTCAAATCCTCATACCACACATCTTGTACTAGCAATCAAAACACCACCCAATCTTTTGAACCTCAACCTACTATTGTTAAAACCTCCTCGAATGCATTAGTTGATGATGATACATTTGACTTCTTGCGACGTCATACCCACGCACGACCGCCGCCAACCACAGCCAACCGTCGGCCGTCCGCCTCCCTCCGACCGGCTGCCGATCGTCACTCCACCGCGCCAGCCGTCGGTGAGTTTCTCCTTCCCGTTCTCTCTCTCTCTCTCTCTAAGTTGTCCTCTGTGCAGCGCCTGCCAGCTGCCTTTGCCGCGCGTCGACGCCGCTCTCCGCCGGTTTCGTGTGGATCAATTCTTGCTTGCTTCTCTTTTGCAAGGAGGGAGGCGACTGGAAGTTTGAAAATTTTGCTTTCTAATGAAGGAGGAGATGAAGTTATTGACATAGACAGGAAAACACTATTGTTAGAACCAGAGAATAATATTGAAGGGGGATTGTCAGTTCCGGGAAAGGATAGACCGGTGTTTAGACCTCCAGAGAGAAGATCTCATCTAGGCCTTGATGTCCTTGCAAATGCAAAACGGGGAGGATCTAATGACAATGGATTCAAAGTCCCACAACAAAGTATTGTTTCTTTTGTTTCATCAATGGAGGAAGAGGAGACAATTGAATCATCTGGAGTCACTGATTCAGGAAAAGAAGCTGTTTCACGAAAGCATTATGTTAAAAATAGAAATTATCGGGAAATAGCTTCCAATGATTCAAATGAAGGGAGTACTTCAGCTGAAGGTGGAATAGCTGGAGATTCATTTAAGAATCGTAATTCTAGTGAAACTTCGGATTCTAGTGTTATAACTATGTCATCCAAAAGCACACATGTAAGCAGGTATAGGAGCCCTAGACAAGACTACGATAATCATGATAGAGAGAGAAATTTTTTTGACAATGATAGTAGAAGCAATAACAGGCGGGCGAGACATGGGCACAGTTATGATGGTGATGAGCCTTATCATGGGAGATCTCGGTACCAAAGGGACTATGGCAGGGAAACTGAAAGAAAGAGAAGTAGATATGAAAGTTTGAGAAGAACTCCTGGTAGATCTGATTGGGATGATGGTAGATGGGAATGGGAAGAAACACCACGTAGAGATGGCCGCTCTAACTCTAGTAGGCACCATCAACCTTCACCATCCCCAATGTATGTTGGTGCCTCACCAGATGCTCGGTTAGTTTCTCCATGGTTGGGTGGGAACACTCCTAATTCTACTGGTTATTCTGCTTCCCCTTGGGATCAGATCTCTCCTTCTCCAGTTCCAGTGCGTGCCTCTGGATCTTCAGTAAAGTCATCAAGCTCAAGTTATCATTCTAAAACTCACCATCTTAAATTTTCTTCACGAAGTTCACCTTTGTCTGAGGATTCTCAACAAGATTCTCAGACAGACAAGTATGAGATCAGTGAGAACATGCGTCTGGAGATGGAATACAACTCTGACCGGGCTTGGTATGATAGAGATGAAGGTAATACAATGTTTGATGCTGATAGCTCATCATTTTTCTTTGGAGATGATGCTGCCTTCCAGAAGAAAGAAGCTGAGCTGGCCAAAAGATTGGTCCGTCGAGATGGAACTAAGATGACTCTTGCTCAAAGCAAAAAGCTGTCTCAGCTCACTGCAGATAATGCACAGTGGGAAGACCGACAACTTTTGAGATCGGGAGCTGTTAGGGGTACTGAGGTGCAAACTGACTTTGACGACGAGGAAGAGCGGAAAGTCATTCTTCTTGTCCATGATACGAAGCCTCCTTTCCTTGATGGAAGAGTTGTTTTCACTAAACAAGCAGAACCAATAATGCCAATAAAAGACCCTACATCAGATATGGCTATAATATCACGCAAAGGATCTACATTGGTGAGGGAAATTCATGAGAAGCAAAATATGAACAAGTCACGACAACGCTTTTGGGAGCTTGCAGGCTCTAAACTTGGTGATATCCTTGGTGTTGAAAAAACAGCCGAGCAGATCGATGCAGATACTGCAGCAGTAGGTGATGAAGGTGAGGTTGATTTTAAGGAAGATGCGAAGTTTGCACAACATATGAAGAAGGGGGAAGCAGTGAGTGACTTTGCCAAGTCAAAAACCATAGCACAGCAAAGACAGTATCTTCCTATATATTCCGTCAGAGATGAGCTGCTGCAGGTTATACGTGAAAATCAGGTGGTTGTGGTGGTTGGAGAAACTGGTTCAGGAAAGACCACACAACTGACTCAGTATCTATTTGAGGATGGTTATACTACAAATGGTATTGTTGGTTGCACCCAACCAAGACGTGTGGCAGCAATGAGTGTAGCAAAAAGAGTCAGCGAAGAGATGGAGTGCGAGTTGGGTGATAAAGTAGGCTATGCCATTCGATTTGAGGATGTAACTGGGCCAACAACTATTATTAAGTATATGACTGATGGGGTTCTTCTACGTGAAACTCTCAAAGATTCTGATCTTGAAAAATACCGTGTAATTGTAATGGATGAAGCTCACGAGAGGTCACTTAGCACTGATGTCCTTTTCGGGATCTTGAAAAAGGTGGTTGCTCAACGTCGTGATTTCAAGCTTATTGTGACATCTGCGACTCTTAATGCTCAAAAGTTTTCAAACTTTTTTGGAAGTGTCCCAATTTTTCACATCCCTGGGAGAACATTTCCTGTGAATACTTTGTATAGCAAAACTCCATGTGAAGATTACGTTGAAGCAGCCGTAAAGCAAGCTATGACCATCCATATCACAAGCCCTCCTGGTGACATTCTTATCTTCATGACCGGCCAAGACGAGATCGAAGCAGCCTGTTTTGCCCTTGCAGAGCGTATCGAACAACTCATTTCATCTACAAAGAAGGGGGTGCCCAAACTTTTGATACTGCCCATCTATTCACAGTTGCCAGCTGACTTGCAAGCAAAGATATTCCAGAAAGCTGAAGATGGCGCCCGAAAATGCATTGTTGCGACCAATATTGCTGAGACATCCTTAACGGTTGATGGAATATTTTATGTTATTGACACTGGTTATGGTAAAATGAAAGTGTATAACCCTAGAATGGGTATGGATGCACTACAAGTGTTTCCGGTAAGTCGTGCTGCTGCTGATCAACGTGCTGGACGTGCTGGTAGAACTGGACCTGGTACTTGCTATCGTTTGTACACAGAAAGTGCATATTTAAACGAAATGTTGCCAAGTCCTGTGCCAGAAATCCAAAGAACTAACCTGGGGAATGTTGTTTTGCTGCTTAAATCGCTTAAAGTTGAAAACTTATTGGATTTTGACTTTATGGACCCACCACCGCAGGATAACATTCTCAACTCCATGTACCAGTTGTGGGTATTAGGGGCTCTTAACAATGTAGGAGGTTTGACTGAACTTGGGTGGAAGATGGTTGAGTTTCCATTGGATCCCCCACTTGCCAAAATGCTTTTGATGGGCGAACAACTTGGGTGCCTTGATGAGGTACTAACGATCGTTTCGATGCTTTCAGTACCGTCAGTATTTTTTCGACCCAAAGATCGAGTCGAGGAGAGTGATGCTGCAAGGGAGAGGTTTTTCATACCAGAATCCGACCATTTAACGTTGTATAATGTTTATCAACAATGGAAACAACACCAGTACAGGGGAGATTGGTGCAATGATCATTTCTTGCATGTTAAAGGGCTACGAAAGGCTCGAGAGGTGCGGTCGCAGTTGTTAGACATTTTGAAGACTTTGAAAATACCTTTGACATCTTGTTGGCCAGATACAGATCTTGTGAGAAAGGCTATTTGCTCTGCTTATTTTCACAATGCAGCTAGATTGAAGGGTGTTGGAGAATATGTTAACTGCAGAAATGGGATGCCATGCCATCTTCATCCGAGCAGTGCTCTTTATGGCATGGGATGTACTCCTGATTACGTCGTGTATCACGAATTGATTTTGACGACGAAGGAGTATATGCAGTGTGCGACAGCGGTCGAGCCTCAATGGTTAGCTGAGCTCGGACCAATGTTTTTCTCAGTCAAGGAGTCAGATACATCACTCTTGGAGCATAAGAAAAGGCAAAAAGAAGAGAAAACAGCCATGGAAGAAGAGATGGAGTCGTTAAGAAAGATTCAAGTCGAGTCAGAGAGAGAAAATAAAGAGCGGGAAAAGGAGAAAAGAAGAAGGCAGCAGCAACAAGTTTCTATGCCGGGTTTTCGTCAAGGTTCTGGAACTTATTTAAGACCAAAGAAGCTAGGTCAAAAGACGGCCACAAATCCCTCCGCAATGCTTACTGGTCTTCTCACCAGGAGAGCGAAACTACAGGACGAGCTACGGAATATTGAGAAGCAGGTTTATGACATGGAGACTAATTACCTACAGGATCCAAGCCAATGTGGGAATGTATTGAAAGGTTTTGAAGGATTCCTGTCTGCATCTAAGAGTACTGCTCTTTTGAAGCGGTCTAGGAAGTTTCAGCTTGAAGATAGGCTCTTCTCATTGTCTTCAGTTACCTCCCCTGCTGCTGAAGAGCTTGCAGCTGGACGAGATGATGGGAGATCCGACTTAGGTCCTGGCAGATCTAAAGGTGGAGGCATATATTCCAATGGACAAGGGAAACCGAAAAAGGGAAGACCGGCCCCTAGGGATGCAAAGAGAATGCGACATTCAAGCGAGCAAGATTTCGACTACGATGATGATCCGGACTTGACATTGTGA 5607 44.5 MSIVNDFFGNYQEDFLWNNSQDESLISGEENYFNYLKEVLFDDIFEEAAGGTTSSDSSSCSSPVMQVKEEIEEGSFGDDIVVQEDESRKEDRVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPVEVVRESLREMKYQWEAGCSPVLALKRRHSIRRKKMAEVEKMEKKMKKKKQTVVVFEDLGVEWDVVAELIRNAMKERGLRKAPGCSRVNINTKTHCFDVANKTHPRRKPEVGFTRRDLCYFNCFDALSYSFYFKSAGIMFLGWPKYYCRRFKSSYHTSCTSNQNTTQSFEPQPTIVKTSSNALVDDDTFDFLRRHTHARPPPTTANRRPSASLRPAADRHSTAPAVGEFLLPVLSLSLSKLSSVQRLPAAFAARRRRSPPVSCGSILACFSFARREATGSLKILLSNEGGDEVIDIDRKTLLLEPENNIEGGLSVPGKDRPVFRPPERRSHLGLDVLANAKRGGSNDNGFKVPQQSIVSFVSSMEEEETIESSGVTDSGKEAVSRKHYVKNRNYREIASNDSNEGSTSAEGGIAGDSFKNRNSSETSDSSVITMSSKSTHVSRYRSPRQDYDNHDRERNFFDNDSRSNNRRARHGHSYDGDEPYHGRSRYQRDYGRETERKRSRYESLRRTPGRSDWDDGRWEWEETPRRDGRSNSSRHHQPSPSPMYVGASPDARLVSPWLGGNTPNSTGYSASPWDQISPSPVPVRASGSSVKSSSSSYHSKTHHLKFSSRSSPLSEDSQQDSQTDKYEISENMRLEMEYNSDRAWYDRDEGNTMFDADSSSFFFGDDAAFQKKEAELAKRLVRRDGTKMTLAQSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTDFDDEEERKVILLVHDTKPPFLDGRVVFTKQAEPIMPIKDPTSDMAIISRKGSTLVREIHEKQNMNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAAVGDEGEVDFKEDAKFAQHMKKGEAVSDFAKSKTIAQQRQYLPIYSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLFEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMECELGDKVGYAIRFEDVTGPTTIIKYMTDGVLLRETLKDSDLEKYRVIVMDEAHERSLSTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALAERIEQLISSTKKGVPKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTELGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRVEESDAARERFFIPESDHLTLYNVYQQWKQHQYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCWPDTDLVRKAICSAYFHNAARLKGVGEYVNCRNGMPCHLHPSSALYGMGCTPDYVVYHELILTTKEYMQCATAVEPQWLAELGPMFFSVKESDTSLLEHKKRQKEEKTAMEEEMESLRKIQVESERENKEREKEKRRRQQQQVSMPGFRQGSGTYLRPKKLGQKTATNPSAMLTGLLTRRAKLQDELRNIEKQVYDMETNYLQDPSQCGNVLKGFEGFLSASKSTALLKRSRKFQLEDRLFSLSSVTSPAAEELAAGRDDGRSDLGPGRSKGGGIYSNGQGKPKKGRPAPRDAKRMRHSSEQDFDYDDDPDLTL 1868
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 7160025 7191009 + CrPI670011_09g007340.1 Cre09g0734 507402
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0734 1868 Coils Coil 1654 1696 - -
Cre09g0734 1868 MobiDBLite consensus disorder prediction 1651 1694 - -
Cre09g0734 1868 Pfam Helicase associated domain (HA2), winged-helix 1418 1443 IPR048333 -
Cre09g0734 1868 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0734 1868 Gene3D - 970 1194 IPR027417 -
Cre09g0734 1868 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1029 1192 IPR014001 -
Cre09g0734 1868 CDD AP2 94 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0734 1868 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 1195 1373 - -
Cre09g0734 1868 Gene3D - 1195 1372 IPR027417 -
Cre09g0734 1868 SMART ha2_5 1414 1504 IPR007502 -
Cre09g0734 1868 MobiDBLite consensus disorder prediction 594 688 - -
Cre09g0734 1868 Pfam Histone acetyltransferase subunit NuA4 1727 1803 IPR015418 GO:0000123(InterPro)
Cre09g0734 1868 SUPERFAMILY DNA-binding domain 93 153 IPR016177 GO:0003677(InterPro)
Cre09g0734 1868 SMART rav1_2 93 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0734 1868 CDD SF2_C_RHA 1196 1361 - -
Cre09g0734 1868 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 1398 1496 - -
Cre09g0734 1868 Pfam DEAD/DEAH box helicase 1027 1177 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cre09g0734 1868 FunFam Ethylene-responsive transcription factor 2 92 153 - -
Cre09g0734 1868 MobiDBLite consensus disorder prediction 1651 1726 - -
Cre09g0734 1868 Pfam Helicase conserved C-terminal domain 1223 1353 IPR001650 -
Cre09g0734 1868 MobiDBLite consensus disorder prediction 568 593 - -
Cre09g0734 1868 MobiDBLite consensus disorder prediction 1802 1868 - -
Cre09g0734 1868 SMART ultradead3 1017 1201 IPR014001 -
Cre09g0734 1868 Pfam AP2 domain 93 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0734 1868 MobiDBLite consensus disorder prediction 548 703 - -
Cre09g0734 1868 Gene3D AP2/ERF domain 93 154 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0734 1868 MobiDBLite consensus disorder prediction 345 369 - -
Cre09g0734 1868 PANTHER ATP-DEPENDENT RNA HELICASE 969 1669 - GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0004386(PANTHER)|GO:0005622(PANTHER)|GO:0005681(PANTHER)
Cre09g0734 1868 FunFam pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 972 1194 - -
Cre09g0734 1868 MobiDBLite consensus disorder prediction 721 774 - -
Cre09g0734 1868 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1214 1394 IPR001650 -
Cre09g0734 1868 SMART helicmild6 1249 1353 IPR001650 -
Cre09g0734 1868 MobiDBLite consensus disorder prediction 721 784 - -
Cre09g0734 1868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1010 1549 IPR027417 -
Cre09g0734 1868 Coils Coil 183 210 - -
Cre09g0734 1868 Gene3D - 1399 1555 - -
Cre09g0734 1868 Pfam Helicase associated domain (HA2), ratchet-like 1444 1503 - -
Cre09g0734 1868 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0734 1868 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0734 1868 Coils Coil 1727 1754 - -
Cre09g0734 1868 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1561 1638 IPR011709 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1943 Cre-Chr2:32813280 Cre09g0734 Cre-Chr9:7160025 2.20E-219 dispersed
Cre06g2437 Cre-Chr6:32224469 Cre09g0734 Cre-Chr9:7160025 1.50E-189 dispersed
Cre07g0463 Cre-Chr7:2396133 Cre09g0734 Cre-Chr9:7160025 1.30E-39 dispersed
Cre08g1660 Cre-Chr8:29094864 Cre09g0734 Cre-Chr9:7160025 3.60E-147 dispersed
Cre09g0473 Cre-Chr9:4511431 Cre09g0734 Cre-Chr9:7160025 1.50E-164 dispersed
Cre09g0517 Cre-Chr9:4897286 Cre09g0734 Cre-Chr9:7160025 2.60E-27 dispersed
Cre09g0529 Cre-Chr9:4952714 Cre09g0734 Cre-Chr9:7160025 1.40E-86 dispersed
Cre09g0734 Cre-Chr9:7160025 Cre10g0753 Cre-Chr10:7332118 4.20E-150 dispersed
Cre09g0733 Cre-Chr9:7147622 Cre09g0734 Cre-Chr9:7160025 1.60E-20 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54326 PF00270 DEAD 5.70E-08 CL0023 Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0734 K12815 - csv:101204563 2359.72