Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0761 ATGATGGAGGCGGCTTGTAGACAGAGACCATGGATACTATTTGACCAAAACAAGGAGGATTCTTTGGAGTTCGAATCTATGGAGCAGAACCTCCCTCCACAATCTGACCTTTCAAAAGGGGTAGCTCATGGATGTCCAGAATGCAGTGACTGTCTGAAGGTCACTGCAAGGTGGCGGCCAGACGATGCAAGATCAGATATTCTTGAAGAGGCTGCTGTTTTTTATCCAACAGAGGAGGAATTTGCAGATACACTTCATTATATAGAAAGAATACGTTCAAGAGCAGAGTCAAGTGGAATCTGTCGCATAGTTCCTCCTCCATCATGGTTGCCTCCATGTCTTTTGAAGGGAAAGGAAACTTGGGAAAATTCTCCTTTCCTAGCCCACTATCAGCGGATTGATGGGTTACAGAAGACTTATGCATGTGGTCAATTTTCTAACCATAGTGGAAACATGAAGAATAAGAGGAGAAGGTTAGAGTATGCGTGTGTTAATGGTCATTTGATGGATCCTGATGAAAGTTGTGGTAGTGATGAGAAAAGCCCAAACTCAGATCTTGGTCGAGAGTTTACTCTAAAAGCTTTTAAAAGCTATGCCGATGACTTTAAATCCCAGTATTTCAGCAGTGGAAATAAGTGCACAAATACAGAAACAAAGTCATCCATGCTTCAAGAGCAGTGGGAACCGTTGGTGGATCAAGTAGAGGGTGAATATAGACGCATTCTCGAGAATCCAACTGAACAAATTGAGGTGCTATGCGGTGATAGTTCGGGTAGCCTTTCACTTGGCAGCGGATTTCCATCATCATCCAGTCCTTTGACTGAGCCAGGTCATGCTGATCATATGGACTCTGGATGGAACTTAAATAATTTACCTAGACTACCTGGTTCACTTCTTTCTTTGGATAGCTTCAAGACATATTCTATTTTGTCACCTCGAGTATGCGTGGGAATGTGCTTTTCTACCGCTTGTTGGCGAGTTGAAGAACACCACTTACCTTTGTTATGTTACTTGCACTTGGGAGCTCCTAAAATATGGTATGGCATTCCAGGAAGATACATTGATAAATTTGACGTAGCCATGAAGAGCCTTCCGGAATTTTTTGTGGAACAGAAAAGGTCTCGTAGAGGAATGGTCAATCAACCATCAATTGCCACATTGAAGAGAGAAGGTGTACCAATTTACCGTTGCATTCAAAATCCAGGAGAGTTTGTTCTCGTCTTTCCAGGAGCATGTCATTCAGGATTTAACTGTGGGTTTAATGTTACTGAAGAAGCCAATTTTGCTCCCCTTGACTGGTTGCCTCACGGTTATAATGCTACAGAGCTGTACTCTATAGAGAGAAGGAAGACGTTAATATCCTTCGATAGGCTGTTGCTTGGAGCAGCCACTGAAGCTGTGAAGGCACAGTGGGAACTCTCATTATGCAGGAAGGAAACCAAAGATAATTTACGATGGAAAAATGCCTGTGGAAAGCATGGGATATTAGCCCAGACATTCAAGTCTCGCATCAAAAGTGAAAGTCTCAGGAGGGAGTATCTTGCGACAGCTTCACAGACACGTGAAGTAACCGAAAGTTTTGATGCTGTCAGGAAGCGCGAATGCAGCATTTGCCTTTATGACTTACACTTGTCTGCAGCTGGTTGTTCATGTTCTGCTGATAGGTACTCTTGTTTGAATCACGCTAAGCAACTCTGTTCTTGTGCTTGGGTCAACAAATTCTTTGTCGTGCGGTACCAAATGGCCAACTTAAATCTTCTTCTTGAAGCCTTGGAAGGAAAACTAAGTGCAGTCTACAAATGGGCCAAAGAGAATCTTGGACTTGCTGTGCATTCCTACAAGAATAGTTCACTGCAATCTCAGCCTGCTGATACACCCCAGTCTTCACAAGGGCATCAATCCGAGGATGCAGAATCTCCAAATACTTTTAATAACTCGATCAATAGAATTAAGGCAGAGATAAAGGCACGTCTTCTTCAAGCGAAAACCTTGAAGAATATGAAAGGAAATGACAGGGTAATAGAATCCGTGGATGCAGTTAAAGACAATGGTATTGTCACAAATTCGGATTCGAGAATTCCAGCAGAAAAAACCGCATCGAAGCTACAGCCAGTGAGTTCGAATGAGCTCAAAGGAAAAGAGTGTACATCAACCCCAGCAGTAGTTTTAAATGAAAGAGGAGATGATTTAATCTTTTCACTCAATTTGGAGTCTTTTGAAACTTTACCTGAGAACTCAGTCTCAAGCTTCTCTGAATCCAATGACGATTGGTCAGATTCTGGCTTTTAA 2289 42.46 MMEAACRQRPWILFDQNKEDSLEFESMEQNLPPQSDLSKGVAHGCPECSDCLKVTARWRPDDARSDILEEAAVFYPTEEEFADTLHYIERIRSRAESSGICRIVPPPSWLPPCLLKGKETWENSPFLAHYQRIDGLQKTYACGQFSNHSGNMKNKRRRLEYACVNGHLMDPDESCGSDEKSPNSDLGREFTLKAFKSYADDFKSQYFSSGNKCTNTETKSSMLQEQWEPLVDQVEGEYRRILENPTEQIEVLCGDSSGSLSLGSGFPSSSSPLTEPGHADHMDSGWNLNNLPRLPGSLLSLDSFKTYSILSPRVCVGMCFSTACWRVEEHHLPLLCYLHLGAPKIWYGIPGRYIDKFDVAMKSLPEFFVEQKRSRRGMVNQPSIATLKREGVPIYRCIQNPGEFVLVFPGACHSGFNCGFNVTEEANFAPLDWLPHGYNATELYSIERRKTLISFDRLLLGAATEAVKAQWELSLCRKETKDNLRWKNACGKHGILAQTFKSRIKSESLRREYLATASQTREVTESFDAVRKRECSICLYDLHLSAAGCSCSADRYSCLNHAKQLCSCAWVNKFFVVRYQMANLNLLLEALEGKLSAVYKWAKENLGLAVHSYKNSSLQSQPADTPQSSQGHQSEDAESPNTFNNSINRIKAEIKARLLQAKTLKNMKGNDRVIESVDAVKDNGIVTNSDSRIPAEKTASKLQPVSSNELKGKECTSTPAVVLNERGDDLIFSLNLESFETLPENSVSSFSESNDDWSDSGF 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7451634 7455812 - CrPI670011_09g007610.1 Cre09g0761 507429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0761 762 Pfam jmjN domain 73 105 IPR003349 -
Cre09g0761 762 MobiDBLite consensus disorder prediction 743 762 - -
Cre09g0761 762 Pfam C5HC2 zinc finger 535 585 IPR004198 -
Cre09g0761 762 PANTHER LYSINE-SPECIFIC DEMETHYLASE 64 645 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cre09g0761 762 ProSiteProfiles JmjN domain profile. 71 112 IPR003349 -
Cre09g0761 762 ProSiteProfiles JmjC domain profile. 280 445 IPR003347 -
Cre09g0761 762 SMART cupin_9 280 445 IPR003347 -
Cre09g0761 762 SMART JmjN_1 70 111 IPR003349 -
Cre09g0761 762 Gene3D Cupin 56 429 - -
Cre09g0761 762 MobiDBLite consensus disorder prediction 617 643 - -
Cre09g0761 762 Pfam JmjC domain, hydroxylase 314 428 IPR003347 -
Cre09g0761 762 SUPERFAMILY Clavaminate synthase-like 279 472 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0761 K11446 - - csv:101221486 1299.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0761 Cre-Chr9:7451634 Cre11g1512 Cre-Chr11:23612276 8.10E-177 dispersed
Cre09g0761 Cre-Chr9:7451634 Cre09g1113 Cre-Chr9:11719674 5.70E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g573 Blo05g00409 . Bda04g00506 . . Bpe06g00417 . . Cmo08g00271 . . . . . . Cpe17g00909 . Bhi09g01230 . . . . . . Cla09g00747 Cam09g0784 Cec09g0780 Cco09g0778 Clacu09g0795 . Cre09g0761 Cone17ag0685 . . . Lsi02g02177 Csa07g01613 . . . Blo10g00272 . . . . Bma09g00587 . . . . Cma08g00273 . Car08g00251 . . . . . . . . . . . . . . . . . . . Chy01g01475 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre11g1512 . 33 1264 JUMONJI Transcription Factor Family AT1G08620 54.6 0.0e+00 1245.3
Cre09g0761 . 5 610 JUMONJI Transcription Factor Family AT1G08620 50.2 8.4e-168 588.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006657 1 4 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54329 PF02373 JmjC 6.50E-30 CL0029 Cre TR