Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0761 ATGATGGAGGCGGCTTGTAGACAGAGACCATGGATACTATTTGACCAAAACAAGGAGGATTCTTTGGAGTTCGAATCTATGGAGCAGAACCTCCCTCCACAATCTGACCTTTCAAAAGGGGTAGCTCATGGATGTCCAGAATGCAGTGACTGTCTGAAGGTCACTGCAAGGTGGCGGCCAGACGATGCAAGATCAGATATTCTTGAAGAGGCTGCTGTTTTTTATCCAACAGAGGAGGAATTTGCAGATACACTTCATTATATAGAAAGAATACGTTCAAGAGCAGAGTCAAGTGGAATCTGTCGCATAGTTCCTCCTCCATCATGGTTGCCTCCATGTCTTTTGAAGGGAAAGGAAACTTGGGAAAATTCTCCTTTCCTAGCCCACTATCAGCGGATTGATGGGTTACAGAAGACTTATGCATGTGGTCAATTTTCTAACCATAGTGGAAACATGAAGAATAAGAGGAGAAGGTTAGAGTATGCGTGTGTTAATGGTCATTTGATGGATCCTGATGAAAGTTGTGGTAGTGATGAGAAAAGCCCAAACTCAGATCTTGGTCGAGAGTTTACTCTAAAAGCTTTTAAAAGCTATGCCGATGACTTTAAATCCCAGTATTTCAGCAGTGGAAATAAGTGCACAAATACAGAAACAAAGTCATCCATGCTTCAAGAGCAGTGGGAACCGTTGGTGGATCAAGTAGAGGGTGAATATAGACGCATTCTCGAGAATCCAACTGAACAAATTGAGGTGCTATGCGGTGATAGTTCGGGTAGCCTTTCACTTGGCAGCGGATTTCCATCATCATCCAGTCCTTTGACTGAGCCAGGTCATGCTGATCATATGGACTCTGGATGGAACTTAAATAATTTACCTAGACTACCTGGTTCACTTCTTTCTTTGGATAGCTTCAAGACATATTCTATTTTGTCACCTCGAGTATGCGTGGGAATGTGCTTTTCTACCGCTTGTTGGCGAGTTGAAGAACACCACTTACCTTTGTTATGTTACTTGCACTTGGGAGCTCCTAAAATATGGTATGGCATTCCAGGAAGATACATTGATAAATTTGACGTAGCCATGAAGAGCCTTCCGGAATTTTTTGTGGAACAGAAAAGGTCTCGTAGAGGAATGGTCAATCAACCATCAATTGCCACATTGAAGAGAGAAGGTGTACCAATTTACCGTTGCATTCAAAATCCAGGAGAGTTTGTTCTCGTCTTTCCAGGAGCATGTCATTCAGGATTTAACTGTGGGTTTAATGTTACTGAAGAAGCCAATTTTGCTCCCCTTGACTGGTTGCCTCACGGTTATAATGCTACAGAGCTGTACTCTATAGAGAGAAGGAAGACGTTAATATCCTTCGATAGGCTGTTGCTTGGAGCAGCCACTGAAGCTGTGAAGGCACAGTGGGAACTCTCATTATGCAGGAAGGAAACCAAAGATAATTTACGATGGAAAAATGCCTGTGGAAAGCATGGGATATTAGCCCAGACATTCAAGTCTCGCATCAAAAGTGAAAGTCTCAGGAGGGAGTATCTTGCGACAGCTTCACAGACACGTGAAGTAACCGAAAGTTTTGATGCTGTCAGGAAGCGCGAATGCAGCATTTGCCTTTATGACTTACACTTGTCTGCAGCTGGTTGTTCATGTTCTGCTGATAGGTACTCTTGTTTGAATCACGCTAAGCAACTCTGTTCTTGTGCTTGGGTCAACAAATTCTTTGTCGTGCGGTACCAAATGGCCAACTTAAATCTTCTTCTTGAAGCCTTGGAAGGAAAACTAAGTGCAGTCTACAAATGGGCCAAAGAGAATCTTGGACTTGCTGTGCATTCCTACAAGAATAGTTCACTGCAATCTCAGCCTGCTGATACACCCCAGTCTTCACAAGGGCATCAATCCGAGGATGCAGAATCTCCAAATACTTTTAATAACTCGATCAATAGAATTAAGGCAGAGATAAAGGCACGTCTTCTTCAAGCGAAAACCTTGAAGAATATGAAAGGAAATGACAGGGTAATAGAATCCGTGGATGCAGTTAAAGACAATGGTATTGTCACAAATTCGGATTCGAGAATTCCAGCAGAAAAAACCGCATCGAAGCTACAGCCAGTGAGTTCGAATGAGCTCAAAGGAAAAGAGTGTACATCAACCCCAGCAGTAGTTTTAAATGAAAGAGGAGATGATTTAATCTTTTCACTCAATTTGGAGTCTTTTGAAACTTTACCTGAGAACTCAGTCTCAAGCTTCTCTGAATCCAATGACGATTGGTCAGATTCTGGCTTTTAA 2289 42.46 MMEAACRQRPWILFDQNKEDSLEFESMEQNLPPQSDLSKGVAHGCPECSDCLKVTARWRPDDARSDILEEAAVFYPTEEEFADTLHYIERIRSRAESSGICRIVPPPSWLPPCLLKGKETWENSPFLAHYQRIDGLQKTYACGQFSNHSGNMKNKRRRLEYACVNGHLMDPDESCGSDEKSPNSDLGREFTLKAFKSYADDFKSQYFSSGNKCTNTETKSSMLQEQWEPLVDQVEGEYRRILENPTEQIEVLCGDSSGSLSLGSGFPSSSSPLTEPGHADHMDSGWNLNNLPRLPGSLLSLDSFKTYSILSPRVCVGMCFSTACWRVEEHHLPLLCYLHLGAPKIWYGIPGRYIDKFDVAMKSLPEFFVEQKRSRRGMVNQPSIATLKREGVPIYRCIQNPGEFVLVFPGACHSGFNCGFNVTEEANFAPLDWLPHGYNATELYSIERRKTLISFDRLLLGAATEAVKAQWELSLCRKETKDNLRWKNACGKHGILAQTFKSRIKSESLRREYLATASQTREVTESFDAVRKRECSICLYDLHLSAAGCSCSADRYSCLNHAKQLCSCAWVNKFFVVRYQMANLNLLLEALEGKLSAVYKWAKENLGLAVHSYKNSSLQSQPADTPQSSQGHQSEDAESPNTFNNSINRIKAEIKARLLQAKTLKNMKGNDRVIESVDAVKDNGIVTNSDSRIPAEKTASKLQPVSSNELKGKECTSTPAVVLNERGDDLIFSLNLESFETLPENSVSSFSESNDDWSDSGF 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7451634 7455812 - CrPI670011_09g007610.1 Cre09g0761 507429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0761 762 Pfam jmjN domain 73 105 IPR003349 -
Cre09g0761 762 MobiDBLite consensus disorder prediction 743 762 - -
Cre09g0761 762 Pfam C5HC2 zinc finger 535 585 IPR004198 -
Cre09g0761 762 PANTHER LYSINE-SPECIFIC DEMETHYLASE 64 645 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cre09g0761 762 ProSiteProfiles JmjN domain profile. 71 112 IPR003349 -
Cre09g0761 762 ProSiteProfiles JmjC domain profile. 280 445 IPR003347 -
Cre09g0761 762 SMART cupin_9 280 445 IPR003347 -
Cre09g0761 762 SMART JmjN_1 70 111 IPR003349 -
Cre09g0761 762 Gene3D Cupin 56 429 - -
Cre09g0761 762 MobiDBLite consensus disorder prediction 617 643 - -
Cre09g0761 762 Pfam JmjC domain, hydroxylase 314 428 IPR003347 -
Cre09g0761 762 SUPERFAMILY Clavaminate synthase-like 279 472 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0761 Cre-Chr9:7451634 Cre11g1512 Cre-Chr11:23612276 8.10E-177 dispersed
Cre09g0761 Cre-Chr9:7451634 Cre09g1113 Cre-Chr9:11719674 5.70E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54329 PF02373 JmjC 6.50E-30 CL0029 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0761 K11446 - csv:101221486 1299.26