Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0763 ATGGCAGCCTCTTATTCTTCTCCTTCTTCTCCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGAGCTCGGCGCCTCCCAGTTCTCTGCCATCCACAAAGTTTTCGGTGCAAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCGGTGACGATCTCATACGAAGCTCAAGCAAGACTTCAAGATCCGATCTACGGTTGCGTATCTCATATTTTCGCTCTCCAGCAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACACTACAAGAAACCCTATTGAATTACCTTACGAAAAATCTTCAGTTTATTCCGACGACCCATTACTAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCGCCGGAGTTTGAACCTGCAGCGGTGCCGTACTTTGAGATGAGCGTCGTCGATTCAAATCTCGCCGGAGATTTCTGTTGCTAA 555 48.83 MAASYSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPIELPYEKSSVYSDDPLLDLQSWLLAESCSAAAPEFEPAAVPYFEMSVVDSNLAGDFCC 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7479801 7480566 - CrPI670011_09g007630.1 Cre09g0763 507431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0763 184 Coils Coil 92 112 - -
Cre09g0763 184 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Cre09g0763 184 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 125 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cre09g0763 184 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0455 Cre-Chr7:2314966 Cre09g0763 Cre-Chr9:7479801 1.60E-38 dispersed
Cre07g0456 Cre-Chr7:2324896 Cre09g0763 Cre-Chr9:7479801 5.80E-44 dispersed
Cre07g0702 Cre-Chr7:4940955 Cre09g0763 Cre-Chr9:7479801 2.30E-31 dispersed
Cre09g0763 Cre-Chr9:7479801 Cre10g1714 Cre-Chr10:31355825 1.70E-35 dispersed
Cre09g0763 Cre-Chr9:7479801 Cre06g0810 Cre-Chr6:1446945 5.60E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54330 PF03195 LOB 1.20E-34 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0763 K13945 - csv:101220863 321.242