Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0835 ATGCTCTTCCAAGACGGCGTGACTTGTTTGGATTCACATGGTATAGCTATGCTATGCTCATGCTGCCCTAGAGTATCTGATGAAGGAAATCAGAAGAAGCCAAATAATCATATCGACGCCTTCCACAATGTTCTTTGTATCGGTCAGATTGTGGATCTCCTTGCTGAGGAGCCAAACTACATTAGAAAAACAAATATTAGAATTATAGTGAGTGATAAACAACTACCAAAGGAACTTCCCTTCTCTCTTTATAACCCACCAACCCTCTCTGCCTCTCTTCACAACTCTTCTCATTTCCGAGCTATGGAAAACACTAAACTTTCATTACCTCTCTTTGCTGCTTTACTCCTCACAAATGCTATTGTTGTTTTAGCCAATTCCAATGAGAATGGTGACATGAATAATAACTTGAGTGTCATAGAAAACTCATGTGCCATTACTCTTTATCCTCAACTATGTCAATCAACAATATACTCCATCGTCGGAACATCCAACTTGTTGAGTTTGAAAGATATTGTTGAAGTGTCATTGAGTGTTGCTGTTGATGCAGCTAAGCATAACTACAAAAACATCAACAAACTTTGGATGTCACTTAATGATGTTAGTAAACGAGACAAGATTGCGGTTCGTGATTGTGTGGAAACCACAGACAGGGCGATTTATGAACTTCACAAGGCCGTAGAGGATCTTCGTGAGTATCCCAACAAGAAATCTCTTACCTTGTACGCTGATGACCTCAAAACCTTTCTCAGTTCTGCCATTACTAATCAGGAGACTTGTTTGGAGGGATTGTCACATGAGAAAACAGAGAAAAGGGTGTTGAAGCTGATTGAAAGCACACATATTCACGTCACAAAGTTGTGTAGTAATACATTGGCTTTGGTTAAGAAATTGACACACACTGATTTTACAAATCAAAAAACCAATAAAATAACCGCTGACCACCCCACGATTGTACTCTTTCCCCACCATGTCGATCAGGAGGAAGGTGAGAATAGAGGAATTAGGGAGGATTTAGAAGACGGAATAAAGTGGCCAGAATGGATGGCGAGCCGTGACCGGAGGCTTTTGGAGTCATCGTACGAAGCTACGGCGGACGTGGTGGTGGCGGCGGATGGAAGTGGAAATTATAAAACGGTGTCGGAGGCGGTGGCGGCGGCGCCGAGTAAGAGCAGCAAAAGATATGTAATAAGAATAAAGGGTGGAGTTTACAGGGAAAATGTTGATGTGCCAAGTAGTAAAACCAATATTATGTTTTGGGGAGATGGAAGATCCAACACCATTATCACTGCTAGCAGAAGTGTTGGGGGTGGCAGTACAACCTTCAATTCCGCCACAGTTGCTGCTGTGGGGGATGGATTTTTAGCTCGGGACATAACCTTTCAAAACACAGCAGGAGCAGCCAATGACCAAGCTGTAGCTCTCCGTGTTGGCTCAGATCGCTCAGCCTTCTACCGTTGTGGCATGCTAGCCTACCAAGACACTCTCTACGTCCACTCGAACCGTCAGTTCTTCGTCAACTGCGTCGTTGCAGGCACAGTCGATTTCATCTTCGGAAACGCAGCAGTCGTATTCCAAAACTCCGACCTCACCCCTCGCAAACCAGGCCCTAGGCAACAGAACATGGTCACAGCACAAGGAAGAACTGACCCGAATCAAAACACGGGAATCGTGATCCAAAAGTGTAAAATAAAAGCGACGTCGGACTTGGAGCCGGTGATAAAAGAATTCCCAAGCTTCCTCGGGAGACCATGGAAGGAATATGCTAGGGTTGTGGTAATGCAAACGGACATAACCAATGTGATAGACTCAAAAGGGTGGGCGCCATGGGGTACTGAAATAAAGAAACCCTACTTTGCGGAATATGATAATAATGGAGCTGGAGCCAATACTTGTTGTAGAGTGACATGGTCTACACTTATTAATGCAGCTCAAGTTAAGACCTTTACGGCTGAACCATTCATAGATGGTGCTAATTGGCTCCCATCCACTGGCTTCCCCTATCAGCTTGGCCTCTAA 2019 44.28 MLFQDGVTCLDSHGIAMLCSCCPRVSDEGNQKKPNNHIDAFHNVLCIGQIVDLLAEEPNYIRKTNIRIIVSDKQLPKELPFSLYNPPTLSASLHNSSHFRAMENTKLSLPLFAALLLTNAIVVLANSNENGDMNNNLSVIENSCAITLYPQLCQSTIYSIVGTSNLLSLKDIVEVSLSVAVDAAKHNYKNINKLWMSLNDVSKRDKIAVRDCVETTDRAIYELHKAVEDLREYPNKKSLTLYADDLKTFLSSAITNQETCLEGLSHEKTEKRVLKLIESTHIHVTKLCSNTLALVKKLTHTDFTNQKTNKITADHPTIVLFPHHVDQEEGENRGIREDLEDGIKWPEWMASRDRRLLESSYEATADVVVAADGSGNYKTVSEAVAAAPSKSSKRYVIRIKGGVYRENVDVPSSKTNIMFWGDGRSNTIITASRSVGGGSTTFNSATVAAVGDGFLARDITFQNTAGAANDQAVALRVGSDRSAFYRCGMLAYQDTLYVHSNRQFFVNCVVAGTVDFIFGNAAVVFQNSDLTPRKPGPRQQNMVTAQGRTDPNQNTGIVIQKCKIKATSDLEPVIKEFPSFLGRPWKEYARVVVMQTDITNVIDSKGWAPWGTEIKKPYFAEYDNNGAGANTCCRVTWSTLINAAQVKTFTAEPFIDGANWLPSTGFPYQLGL 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8371939 8378334 + CrPI670011_09g008350.1 Cre09g0835 507503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0835 672 SMART PMEI_2 135 294 IPR006501 GO:0004857(InterPro)
Cre09g0835 672 FunFam Pectinesterase 360 672 - -
Cre09g0835 672 FunFam Pectinesterase 136 299 - -
Cre09g0835 672 NCBIfam pectinesterase inhibitor domain 108 299 IPR006501 GO:0004857(InterPro)
Cre09g0835 672 SUPERFAMILY Pectin lyase-like 363 671 IPR011050 -
Cre09g0835 672 PANTHER PECTINESTERASE 114 663 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre09g0835 672 ProSitePatterns Pectinesterase signature 1. 391 410 IPR018040 -
Cre09g0835 672 Gene3D Invertase/pectin methylesterase inhibitor family protein 136 300 IPR035513 -
Cre09g0835 672 Gene3D - 360 672 IPR012334 -
Cre09g0835 672 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 139 299 IPR035513 -
Cre09g0835 672 ProSitePatterns Pectinesterase signature 2. 510 519 IPR033131 -
Cre09g0835 672 MobiDBLite consensus disorder prediction 529 550 - -
Cre09g0835 672 Pfam Pectinesterase 366 657 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre09g0835 672 Pfam Plant invertase/pectin methylesterase inhibitor 139 294 IPR006501 GO:0004857(InterPro)
Cre09g0835 672 CDD PMEI-like_3 143 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0131 Cre-Chr9:1568871 Cre09g0835 Cre-Chr9:8371939 1.20E-175 dispersed
Cre09g0835 Cre-Chr9:8371939 Cre09g2047 Cre-Chr9:39579314 1.10E-100 dispersed
Cre09g0835 Cre-Chr9:8371939 Cre07g1788 Cre-Chr7:33318648 1.80E-183 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0835 K01051 - csv:101221055 867.84