Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0860 ATGGAACTTCATCTCTTGTGGGTTGGCATCTTCCTTTGCTCTGGATTTTGGTCTCTTGCATTGAGTGATCAAGATGGTTTCCTAAGCTTATCTTGTGGAGCAACTACCACTTTCACTGACTCCTCCAACATTTTATGGATTCCGGACGTCGACTACATCAGCTCCGGTAACACGTCAATCATCGACAATAACCATGTTCGAATCTTCCCCGACCCCCGAGCGCGAAATTGTTACAAGCTACCACTTAAAAATAGCTCCTCATCAGTTCTCATCAGAGCTGAGTTTGTGTATAAAAACTATGACAAGCTTGGGAAGCCCCCTGCATTCTTTGTTTCTCTTGGGACTGCCATAACTAGCAATGTGAACCTTACTTTTCATGACCCTTGGACTGAGGAGTTTGTATGGCCAGTTAACAAAGAAACTGTCTCCTTTTGTTTACATTCCATTCCTCAAGGTGGCAGCCCTTTGATATCTTCGATCGAACTCCGGCCGCTACCGCGAGGAGCGTACAAAGATGATGGCTTGCTTCAGAGTCAGGCTCTTAGAAAGTCATATCGAATCAATTGTGGTTATACTAATGGATCTCTCAGGTACCCGATCGATCCATACGACCGAATATGGGACGCTGACCGCAACTTCAAGCCATTTCATGTGTCATCAGGGTTCAAAGTTGAGGCCAACTTTGATTTGATAGGAGTGAAGGAAGCTCCACCAGCTGCAATTGTTGAAACAGCAAGAGTTTTGACAAGAAGAGATGAGCTAAGCTACAACCTTCCACTGGAAGTGGAAGAAGGAGATTACTATGTGATTCTTTATTTTGGTGGGATTCTTGCTGTTCATCCTTCATTTGATGTATTGATCAATGGGAGAGTTATAGAATCAAACTACACTTTTGAAAAGGGAGAGATGAGGGCTTTGTATGTCATTCAATACCAAATCAAGACCTTGAATATCACTCTCAAGAGTGTTAAATTCTATCCTCAAATCAATGCTATTGAGGTCTATCAGATTGTTCATATTCCTTTGGAAGCTTCATCAACCACAGTTTCAGCCCTTCAGGTGATTCATCAATCTACTGGTTTGAATTTGGGATGGGAAGATGATCCATGTTCCCCAACAACATGGGATCATGTTGGATGTGAAGGAAACCTTGTTACATCTCTAGAGCTTTCCAACATCAACTTGAGGTCGATCGGCCCGACGTTTGGCGACATTCTCGATCTCAAAATACTGGATTTGCACAACACTTCACTTTCAGGAGAAATACAAAATTTGGGCAGTCTCACTCATCTTCAAAATTTGAACTTGAGTTTCAACAAGCTAACATCATTTGGGTCAGATTTGGAGAACCTTAGCAACCTCAAAATTCTGGACTTGCAGAACAATAGTCTGCAGGGAATTGTTCCAGACAGCTTGGGAGAACTTGAAGATCTTCAATTATTGAATTTGGAGAACAATAGGCTGGAAGGCACCCTCCCATTGTCTTTGAACAAAGGAAGTCTGGAAATTAGAACAATAGGAAACCCTTGTCTGTCATTCTCCACAATGACATGCAATGATGTATCATCCAATCCAGCCATTGAAACACCACAAGTCACAGTTGTTCCCGAGAAGAAGGGGATGAGCAGCAGCCATAATAATACTAACAATAATTTGCCTATCATAATTATTGTTTCTGCAGTTGCTTCAGCTTTGCTACTTCTCATCACTCTCTCCCTTTCACTTCTACTCTACCTGAGAAACCAATCTCAACACACAACAACTCAACTCACATACTCAACAAAAGCAGCAATGGAGCTAAGGAATTGGAACTCAGCAAGAGTATTCTCGTACAAGGAGATAAAGTCAGCTACAAACAACTTCAAGGAAGTGATTGGAAGAGGAAGCTTTGGATCAGTTTATCTTGGAAAGCTTCCGGATGGTAAACTTGTGGCTGTCAAAGTAAGGTTTGACAAAACCCAACTTGGGACTGACTCCTTCATCAATGAGGTTCACCTTTTGTCTCAAATTCGCCATCAAAATCTTGTTTGTTTGGAAGGATTTTGTAACGAATCCAAACGACAAATACTTGTCTATGAGTATTTACCTGGTGGATCATTGGCTGACCACATATATGGCATGAACAAAAAAAGTGTTTCTCTTAGTTGGATTAGAAGACTCAAAGTTGCTGTTGATGCAGCAAAAGGGTTGGACTACTTACACAATGGAAGTGAGCCAAGAATAATCCACAGAGATGTGAAGTGTAGTAACATTCTTTTGGATATGGAAATGAATGCAAAAGTTTGTGACTTTGGCCTTTCCAAGCAAATTTCACATCCTGATGCAACTCATGTCACCACTGTTGTCAAGGGCACTGCTGGTTATTTGGATCCTGAGTATTATTCCACTCAACAGTTAACTGAAAAGAGCGACGTGTATAGTTTTGGAGTTGTGTTATTGGAGCTTATTTGTGGAAGGGAGCCTTTGAGTCACACAGGAAATCCAGATTCTTTCAACTTGGTGCTATGGGCAAAACCCTACTTACAAGCAGGTGCATTTGAGATAGTAGATGAAAATTTGAGAGGAAGGTTTGATGTTGAAAGTATGAAAAAGGCAGCTATTGTTGCTATAAGGTGTGTGGAAAGAGATGCTTCTCAAAGGCCTAATATTGCACAAGTTTTGGCAGAGCTACAAGATGCTTATGATGCACAGATTGCATATCTTTCTACTTTTCACCTTTGA 2721 41.2 MELHLLWVGIFLCSGFWSLALSDQDGFLSLSCGATTTFTDSSNILWIPDVDYISSGNTSIIDNNHVRIFPDPRARNCYKLPLKNSSSSVLIRAEFVYKNYDKLGKPPAFFVSLGTAITSNVNLTFHDPWTEEFVWPVNKETVSFCLHSIPQGGSPLISSIELRPLPRGAYKDDGLLQSQALRKSYRINCGYTNGSLRYPIDPYDRIWDADRNFKPFHVSSGFKVEANFDLIGVKEAPPAAIVETARVLTRRDELSYNLPLEVEEGDYYVILYFGGILAVHPSFDVLINGRVIESNYTFEKGEMRALYVIQYQIKTLNITLKSVKFYPQINAIEVYQIVHIPLEASSTTVSALQVIHQSTGLNLGWEDDPCSPTTWDHVGCEGNLVTSLELSNINLRSIGPTFGDILDLKILDLHNTSLSGEIQNLGSLTHLQNLNLSFNKLTSFGSDLENLSNLKILDLQNNSLQGIVPDSLGELEDLQLLNLENNRLEGTLPLSLNKGSLEIRTIGNPCLSFSTMTCNDVSSNPAIETPQVTVVPEKKGMSSSHNNTNNNLPIIIIVSAVASALLLLITLSLSLLLYLRNQSQHTTTQLTYSTKAAMELRNWNSARVFSYKEIKSATNNFKEVIGRGSFGSVYLGKLPDGKLVAVKVRFDKTQLGTDSFINEVHLLSQIRHQNLVCLEGFCNESKRQILVYEYLPGGSLADHIYGMNKKSVSLSWIRRLKVAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNAKVCDFGLSKQISHPDATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSHTGNPDSFNLVLWAKPYLQAGAFEIVDENLRGRFDVESMKKAAIVAIRCVERDASQRPNIAQVLAELQDAYDAQIAYLSTFHL 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8585463 8596782 - CrPI670011_09g008600.1 Cre09g0860 507528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0860 906 SMART LRR_typ_2 451 474 IPR003591 -
Cre09g0860 906 SMART LRR_typ_2 428 450 IPR003591 -
Cre09g0860 906 SMART LRR_typ_2 475 499 IPR003591 -
Cre09g0860 906 Pfam Protein kinase domain 621 888 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g0860 906 SMART serkin_6 619 894 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g0860 906 FunFam serine/threonine-protein kinase PBS1-like 587 694 - -
Cre09g0860 906 Pfam Leucine rich repeat 430 488 IPR001611 GO:0005515(InterPro)
Cre09g0860 906 ProSiteProfiles Protein kinase domain profile. 619 894 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g0860 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 741 753 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g0860 906 Gene3D Transferase(Phosphotransferase) domain 1 695 902 - -
Cre09g0860 906 ProSiteProfiles Leucine-rich repeat profile. 430 452 IPR001611 GO:0005515(InterPro)
Cre09g0860 906 Pfam Malectin-like domain 30 337 IPR024788 -
Cre09g0860 906 SUPERFAMILY L domain-like 350 498 - -
Cre09g0860 906 PANTHER OS07G0107800 PROTEIN-RELATED 447 893 - -
Cre09g0860 906 CDD STKc_IRAK 625 891 - -
Cre09g0860 906 Gene3D - 182 338 - -
Cre09g0860 906 Gene3D Phosphorylase Kinase; domain 1 592 694 - -
Cre09g0860 906 SUPERFAMILY Protein kinase-like (PK-like) 594 888 IPR011009 -
Cre09g0860 906 Gene3D Ribonuclease Inhibitor 348 531 IPR032675 -
Cre09g0860 906 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 695 900 - -
Cre09g0860 906 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0860 Cre-Chr9:8585463 Cre10g2173 Cre-Chr10:36272172 5.20E-98 dispersed
Cre09g0860 Cre-Chr9:8585463 Cre09g0865 Cre-Chr9:8651998 9.40E-63 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64398 PF12819 Malectin_like 6.50E-52 CL0202 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0860 - - - 0.0