Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0880 ATGAATGATCTTGTGGAATTTCATTCTGAAGATTTGCATGCAGGGTTTGTAAATGAACAACAAGAAGAAATTATGGATCAAACACAGATCTGGCTTCATGATCAAAATCAACAACAAAATCATCAAAATTTTCTGTCTGATAATGATGATGATACTTTGATGTTCTACTCCGACTTCCCTCCACTGCCTGATTTTCCATGCATGTCGTCGTCTTCGTCGTCTTCGTCTACTCCTGCTCCGGTTAAAGCCACGGCTTCGTCCTCGTCGTCCTCCTCATCGTCCTCCGCCACTTCATGGGCAGTTTTGAAATCAGATGCTGATGAAATTACTGAAGAAATCAGAACAAATTATGATGCCAACAAATTATCATCGCCTCCGGTAGCGGAGACCGCGTTCACCGGTGGCGGGGATTGTACCGACGATATGATGATGGAGACGTTTGGATACATGGATTTACTCGAAGATAGTAACGAGTTTTTCGATCCGACGTGTATATTTCAGAACGAACAAGAACAACAACAAGAACAACGAGTAGTAGTTGAAGAAGATCAAGAGGGTTTGGAAGATTTGCAATTGGAGAGATTTGAAGAAGTGGAAATGGAGGATTTGATGATGATGCATGGCGGTGAAAGTAAGGATAATGATGATGATAATGGAGGGAAACAAAACGACGTGGTTGAGGAAGAAGATATGGCAAAGGTTTTTTTGGAATGGCTTAGAAGTAATAGAGAAACAGTTTCTGCTGATGATTTGAGGAATGTTAGAATAAAAAAAGCCACCATCGAAAGCGCCGCCCGCCGACTCGGCGGCGGCAAGGAGGGAATGAAACAGCTTTTGAAGCTTGTTCTTCAATGGGTTCAAACAAATCACCTTCACAAGAGGAAATTCAAAGATCTCACTATTGAAACTGATACCCATTTCTTAGGGTTTCAAAATAACCCTAATTCCTCCTCCAACCTCCCTTGGATCCAAACCCCGCCCCCGTTACCGCCTCCGCCTTTGTATTCTCCACCGATGCTCGGATATGTCCCGGCCACTGGCGGAGATGCGTATGGTGTTGGTCGTGGTTTCTCGGATCATTACGGCCAGTTACTTGACTCCTCGTTGTCCTGGAGTAATAACAGTAGTAGCAACAATAATAATAATTTCTCGGGACAGTTTGGACTACCCCCGTCGCATTTCAACTCCTTTGTTGATAATTTTGCGGCGGGGCCTCCCCTGCCACCGCCGCAACCACAAGGTTTTGCAGCGGGGTATGGCGGAGGGCATCAATTCCCATATGTGGGTCAGTATTTTCAAGGGCAGGGTGGTAGTGGTGGCGCCGGTGGCGATAATGGTTTGGTTAGGTTGGATTCCTCAGCAACAAAGGAGGCTCGGAAGAAGAGAATGGCGAGGCAGCGGCGATTCTCTGCACATCATCGCCACCATCATGGTGGCCACCATGGCAACAGCCACCAAGATCAGCATCCGACTCAGATGAATCCTAATGCTTCAGATCATTGCAACATGGCTACAACTGCTCAGCCCAATGCTGGTAACTGGGTCTACTGGCCGTCCCCCAGCGCAGCAGTGGCCTCTTCCGCCACATCGTCCGGATTTCCGGTGGACTCGCAGCCTGTGCAAGCTGTTGATCGGTCTAATTCTTCCATGCAGAATCAGAACTACCCACCACGAATTCCATCTGACCGGCGGCTGGGATGGAAACCAGAGAAAAACTTGAAGTTTCTTTTACAGAAGGTTTTGAAACAAAGTGATGTGGGCAATTTGGGGAGAATTGTACTACCAAAGAAAGAAGCAGAAACCCATCTCCCAGAATTGGAGGCAAGAGATGGGATTTCCATTGCAATGGAAGACATTGGAACTTCAAGAGTTTGGAATATGCGTTATAGGTATTGGCCAAACAACAAAAGCAGAATGTATCTCCTTGAAAATACAGGGGACTTTGTAAGAGCCAATGGACTTCAAGAAGGAGACTTCATTGTCATCTACTCAGACGTCAAGTGTGGGAAATATATGATTCGAGGAGTGAAAGTACGGCAACCGGGGTCGAAACCCGAGAGCAGAAGGCCAGGAAAATCGCAAAGAAGCCATACGACTGCGGCTGCCAATGCGTCGTCACCTTCGCCAACGACCGTCGCAACCCCGAAGAGACACTAA 2157 46.87 MNDLVEFHSEDLHAGFVNEQQEEIMDQTQIWLHDQNQQQNHQNFLSDNDDDTLMFYSDFPPLPDFPCMSSSSSSSSTPAPVKATASSSSSSSSSSATSWAVLKSDADEITEEIRTNYDANKLSSPPVAETAFTGGGDCTDDMMMETFGYMDLLEDSNEFFDPTCIFQNEQEQQQEQRVVVEEDQEGLEDLQLERFEEVEMEDLMMMHGGESKDNDDDNGGKQNDVVEEEDMAKVFLEWLRSNRETVSADDLRNVRIKKATIESAARRLGGGKEGMKQLLKLVLQWVQTNHLHKRKFKDLTIETDTHFLGFQNNPNSSSNLPWIQTPPPLPPPPLYSPPMLGYVPATGGDAYGVGRGFSDHYGQLLDSSLSWSNNSSSNNNNNFSGQFGLPPSHFNSFVDNFAAGPPLPPPQPQGFAAGYGGGHQFPYVGQYFQGQGGSGGAGGDNGLVRLDSSATKEARKKRMARQRRFSAHHRHHHGGHHGNSHQDQHPTQMNPNASDHCNMATTAQPNAGNWVYWPSPSAAVASSATSSGFPVDSQPVQAVDRSNSSMQNQNYPPRIPSDRRLGWKPEKNLKFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQPGSKPESRRPGKSQRSHTTAAANASSPSPTTVATPKRH 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8795250 8798285 - CrPI670011_09g008800.1 Cre09g0880 507548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0880 718 MobiDBLite consensus disorder prediction 544 564 - -
Cre09g0880 718 SUPERFAMILY DNA-binding pseudobarrel domain 576 672 IPR015300 -
Cre09g0880 718 CDD BfiI_C_EcoRII_N_B3 575 676 - -
Cre09g0880 718 MobiDBLite consensus disorder prediction 485 500 - -
Cre09g0880 718 MobiDBLite consensus disorder prediction 679 718 - -
Cre09g0880 718 SMART B3_2 577 679 IPR003340 GO:0003677(InterPro)
Cre09g0880 718 MobiDBLite consensus disorder prediction 67 99 - -
Cre09g0880 718 MobiDBLite consensus disorder prediction 544 558 - -
Cre09g0880 718 FunFam B3 domain-containing transcription factor FUS3 573 687 - -
Cre09g0880 718 MobiDBLite consensus disorder prediction 453 500 - -
Cre09g0880 718 Gene3D - 573 689 IPR015300 -
Cre09g0880 718 MobiDBLite consensus disorder prediction 460 482 - -
Cre09g0880 718 MobiDBLite consensus disorder prediction 694 718 - -
Cre09g0880 718 Pfam B3 DNA binding domain 578 674 IPR003340 GO:0003677(InterPro)
Cre09g0880 718 ProSiteProfiles B3 DNA-binding domain profile. 577 679 IPR003340 GO:0003677(InterPro)
Cre09g0880 718 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 230 686 IPR044800 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1922 Cre-Chr4:36775929 Cre09g0880 Cre-Chr9:8795250 9.50E-29 dispersed
Cre09g0880 Cre-Chr9:8795250 Cre09g1710 Cre-Chr9:35244575 2.70E-33 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54338 PF02362 B3 1.90E-17 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0880 K09287 - csv:101204282 1047.34