Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0908 ATGACGCTTTACGAAGAGAATCCAGGGGAGTCTCGGAAAGGTTTGGAAGGTGAGGATCTGTATGAAGAACTGTGGAAGGCTTGTGCAGGGCCTCTTGTTGAAGTTCCTGTCGATGGAGAAAGGGTTTTTTACTTTCCTCAGGGTCATATGGAACAATTGGAAGAGTCCACGAATCAGGAGCTTAATCACCAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTTTGTCGTGTTGTTAACATTCGTTTGCTGGCTGAAAAGGAAACAGATGAGGTCTATGCTCAAATCACTTTATACCCAGAAGCTGATCAAAGTGAGCCCCAAAGCCCTGATCCAGAGCCCCCTGAGCGTACAAGGCAAACTGTTCATTCCTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGTTTCTCAGTTCTTAGGAAGCATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAATCCACCCCAACTCAGGAGTTAGTTGCCAAGGATCTTCATGGGTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCGCGGAGGCATTTGCTAACTACCGGGTGGAGTACATTTGTTACATCGAAACGGCTGGTTGCTGGGGATGCCTTTGTTTTCTTAAGGGGTGACAATGGGGAACTGAGGGTTGGAGTTCGACGGCAGGCTCGGCAGCAGAGTTTGATGCCTTCCTCCGTGATATCTAGCCATAGTATGCACCTTGGACTTCTTGCCACTGCTTCTCATGCTGTTCGAACGCAGACCTATTTCGTTGTTTATTACAAACCGAGAACTAGCCAATTCATCATCAGCTTAAACAAATACTTGGAGACGATTAAAAACGGATATGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAGGAATCACCAGAGAGAAGGTTCACTGGAACTATTGTTGGTGTTGGTGATATTTCTCCGCAATGGTTGAATTCTAAATGGCGATCGCTAAAGATTCAATGGGATGAACCTGCTACGATTCAGAGGCCGGAACGAGTTTCTCCATGGGAGATTGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCTGCCATAAAAAGTAAAAGGGCTCGTCCTGTCGAGATTCCTCCTCCTGAAATTACTTCCAGTTCAGCCCCTTCGGGCTTTTGGCTTCAAGGATCGACAATTCCTCATGAAATACCCCAACTAAGTGGTACGAATGAAGTTCAAAGCAGCAATAACCGGGTTGTCTGGGCTCTTGGACAGCGAAAACTCGATAGCAATAGCAACCACAGTAATCCAATAGCAAATGTTGAAGGCATCTGGCCTTCTCCTCCACTCAATATTTCCCTGAAGCTTTACCCAGATTCAACATTTGATAGCGAACTTGTTCAAAAGCAGCCACCACCCTCTCCTTATTCTTCATCTGTCACTTCAAAGCCTAGTAGTGACCTCATACAGCACGATCAACTGGAGAAAGGGAATAAAACCGACATTTCTCTCGGTTGCCGAATATTTGGAATCGATTTGAAAAATAACTCTAGCATTGTCTCTTCCTTGGAAAGAAAATCGTGTTGCCCAATGACGGTGGCCAATGGTGCCAAAGATCCAGTAGCTGCAGCTGCTGTGACACCTCAAGTCGTTGTTGGAAACCTCTCACAGTCTTCAAAGGAGCAGCTGCAAGCGTCATCAGAGCTGTCGACAAAGGGAACACAGACAAAACACATTTCCAATCTCTCATTGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCGGTTGGTCGAGCGGTCGACTTGACTGCACTTGAAGGGTATGAAGATCTGATAGACGAGCTGGAGAATGTATTTGAAATAAAAGGAGAACTTCGTGAAATGAACAAATGGTCTGTCGTTTTCACAGATGACGAAAACGACATGATGCTTGTGGGGGACGATCCATGGCCGGAGTTCTGTAAGATGGCGAAGAGGATCTTTATATATTCAAGTGAAGAAGTGAAGAAGATGAGTAGGGAAAGCAAGCTTGTTTCCCCATCTTCCTTAGATAGCTTGGATTCAGAGCGCAAGACTGAATCCTAA 2082 45.29 MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQSEPQSPDPEPPERTRQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELVAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGLLATASHAVRTQTYFVVYYKPRTSQFIISLNKYLETIKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDISPQWLNSKWRSLKIQWDEPATIQRPERVSPWEIEPFVPSASLNFTHPAIKSKRARPVEIPPPEITSSSAPSGFWLQGSTIPHEIPQLSGTNEVQSSNNRVVWALGQRKLDSNSNHSNPIANVEGIWPSPPLNISLKLYPDSTFDSELVQKQPPPSPYSSSVTSKPSSDLIQHDQLEKGNKTDISLGCRIFGIDLKNNSSIVSSLERKSCCPMTVANGAKDPVAAAAVTPQVVVGNLSQSSKEQLQASSELSTKGTQTKHISNLSLRTRTKVQMQGVAVGRAVDLTALEGYEDLIDELENVFEIKGELREMNKWSVVFTDDENDMMLVGDDPWPEFCKMAKRIFIYSSEEVKKMSRESKLVSPSSLDSLDSERKTES 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9117104 9120536 + CrPI670011_09g009080.1 Cre09g0908 507576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0908 693 FunFam Auxin response factor 578 671 - -
Cre09g0908 693 ProSiteProfiles PB1 domain profile. 583 675 IPR053793 -
Cre09g0908 693 SMART B3_2 125 227 IPR003340 GO:0003677(InterPro)
Cre09g0908 693 MobiDBLite consensus disorder prediction 670 693 - -
Cre09g0908 693 SUPERFAMILY CAD & PB1 domains 579 659 - -
Cre09g0908 693 Gene3D - 122 227 IPR015300 -
Cre09g0908 693 MobiDBLite consensus disorder prediction 462 484 - -
Cre09g0908 693 CDD B3_DNA 123 225 IPR003340 GO:0003677(InterPro)
Cre09g0908 693 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677(InterPro)
Cre09g0908 693 MobiDBLite consensus disorder prediction 99 121 - -
Cre09g0908 693 Gene3D - 287 358 - -
Cre09g0908 693 SUPERFAMILY DNA-binding pseudobarrel domain 116 254 IPR015300 -
Cre09g0908 693 Pfam AUX/IAA family 558 667 IPR033389 -
Cre09g0908 693 FunFam Auxin response factor 286 357 - -
Cre09g0908 693 Pfam Auxin response factor 251 330 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre09g0908 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 673 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre09g0908 693 FunFam Auxin response factor 123 227 - -
Cre09g0908 693 Gene3D - 579 671 - -
Cre09g0908 693 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0908 Cre-Chr9:9117104 Cre11g0629 Cre-Chr11:3472763 4.50E-17 dispersed
Cre11g1924 Cre-Chr11:30996648 Cre09g0908 Cre-Chr9:9117104 6.90E-06 dispersed
Cre07g1510 Cre-Chr7:30378920 Cre09g0908 Cre-Chr9:9117104 1.20E-211 transposed
Cre09g2333 Cre-Chr9:42605333 Cre09g0908 Cre-Chr9:9117104 2.10E-204 transposed
Cre11g0526 Cre-Chr11:2250320 Cre09g0908 Cre-Chr9:9117104 4.50E-179 transposed
Cre07g0499 Cre-Chr7:2787343 Cre09g0908 Cre-Chr9:9117104 3.10E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54340 PF02309 AUX_IAA 6.70E-06 CL0072 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0908 K14486 - csv:101205805 1251.11