Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0923 ATGGGGCGAAAGAAGCCTACTGCAAGGGATGATGACAGCGCCCCTGCGGCAGCCCATGGTGGTGGGAAGTCCAAGAAAAAAACGTTTGCAGTAGACGACGATGAGTACTCCATTGGAACCGAGTTGTCTGAAGAACCCCAGGTTCCGGAGGAGAAGGTCGTGATAACTGGGAAGAAGAAGGGTAAGAAAGGCAATTCAAAAGCTTCACAACTTAAAGAGGATGACGATGACGATGATGTGGATGGTGTTTCAGAAATTGTTATTACCGGGAAGAAGAAGGGCAAGTCGAAGAAGGGTGGAACTAGCAGTGCTTTTACTGCTGCCAGTTTTGGTTTGCTTGAAGAGGAGGGAATGGATGACGATGATGAATCTGTGTTGACTGCAGAAAAGGATGATGATGAAGAGGAAGATTCTGCGATCAAGTTTTCAGGTAAGAAGAAGTCATCCAAATCTTCAAAGAAGAGTGGTTTTTCTGCAGTGTCAGCATTCACTGCCCTTAATGATGAGAATGATGAGGATGTAATTGGTGATGAGGTCAGGGTTGATGAAGATATTGATGATGAGTCTGTTATTGCATTTACTGGTAAGAAGAAGTCATCAAAAGGTGGCAAGAAGGCCGGGAGTGCATTTACAGGTTTTAGTGGTCTTGACTATGAGGACGAGGACAGAGATGATGATAAAGATGGGGATGAAGATGTGACATCAGTTAGCTTCTCTGGTAAGAAAAAGAAGTCAGCTAAGGCTTCAAAGAAGGGTGGAAATTTGTTTAGTGCAGCATTAGCAGATGAGGAAAATGATGGCGATGTTTCTATTTCAGAGCCAAATAAATTAGACAATGATGGTGTTAATGAAGACGATGTCAATGTTATTGCATTTTCTGGTAAGAAAAAGTCCTCTAAGAAGAAAAGCAGCAGTACTTTTACTGCATTAAATGATGAAAATGCGCAGGGCAATGAAGTTAAGGATGTAGTTGTACCTGAAATACTTAATACAGTAAGTAGCAATCTTGATTCTGATTTATCTAATGCTAACAAGATGGAAGCGGTGGCAGAGACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGCGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTGGCTGAGCTAGGAGAAGGGCCTACCATATCAAAACCAGCAGACCCTCCTCTTTCTTCCCAGGAGGCCAAAGTTGAGAATCCACCTGAGCCAGTAGCTCCTCCTGAAAAGGAAGCTGAAGAAGAGAGCACAGAATCGGCTGCAGCAAGGAAGAAGAAAAAGAAGAAGGAGAAGGAAAAAGAAAAAAAGGCTGCTGCTGCTGCAGCAGCTGCTGAAGGGAATGATGAAAAGATTGAGGAGGTAAAGACTGAAATTATAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCGGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAGGAAGCAATGGCTAGAAGAAAAGAAGAAGAAGAGCGAAGGAAAAGGGAGGAGGAAGAGAGATTGAGAAAGGAAGAAGAAGAGAGACGTAGGCTAGAAGAACTCGAAAGGCAAGCTGAGGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTTTTAAGGAAGAAACAGGAAGGCAAGCTGTTAACAGGTAAACAAAAGGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATTTTATCAAATGCCGGAGGTTTACCTCTGTCTACATCTGACCCTAGTGCACCAGCTAAACGACCAAAATACCAGACAAAGAAGACAAAACCAGCCCATCATCAAACAAATGGAAATGCACAAACGAAGGCAGTGGAGCATACAGAAGAAAAAATACAAGAAAAAGATGTGGCAGAGACAGAAATATTGGAGTCACAGAAGATTGCAGCTGTTGAGTTGATGCATATGGAGGAAAAAGCAGATGTTGTTGAGGCTACAGAAGACAATGAAATTCAAGAAGATGAGGATGAGGATGAATGGGATGCGAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCCTTTGCTGACGAGGAGCTTGAATCAGAACCTGAGAATGGCATGAAAAAAGATACAAAGAATGGTGCAGGTGCCAAGCTAGCTGCCCCTGCTCAAAAAGGTTTCCCTTCTCAGTCTATAAAGTCACAAGATATTGAAAACAAAAAGAAGCAGGACGAGGTTGAGGTTGCCGACAAGGGCAAAAGAAAAGATGATGCTGTTAAGAAAAAAGCTTCAGTCCCAGATGCTACTCCTGTACCACAGGAAGAAAATCTTCGCTCGCCCATATGTTGTATTATGGGTCATGTTGATACTGGTAAAACCAAGCTGCTGGACTGTATCCGTGGTACAAATGTTCAAGAGGGAGAGGCGGGAGGAATTACTCAGCAGATTGGGGCAACATATTTTCCTGCCGAGAACATTCGGGAAAGAACTAGGGAACTGAAGGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACCCCTGGGCATGAGTCGTTTACAAACTTACGTTCTCGTGGTTCGGGCTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCCTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAATACAGAATTTATTGTTGCTCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATTCTTAAGACAATGAAGCAGCAAACCAAGGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAGGGATTGAATACTGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGCATTCCAGACATGTTACTATTATTGGTGCAGTGGGCCCAGAAAACTATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGCACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATTGTTGTTTGTGGGATGCAGGGCCCAATTGTTACTACTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTCCGGGTGAAGGGAACATATCTGCATCATAAGGAAATCAAGGCTGCTCAGGGAATAAAAATAACTGGACAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATCAAGGATTCAGCTATGGAAGATATGAAGTCAGTCTTGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAAAGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCTGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATATATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTTAAGGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTTTTTCCTTGTGTTCTCAAAATTCTACCGAATTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTTGATGTGATTGAGGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGCATTGCATCTATTGAAAATAACCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCTATTAAGATAGTTGGGCACTCTTCGGAGGAGCAACAAAAGATGTATGGTAGACACTTTGATTTGGAGGATGAACTTGTCAGCCATATATCAAGGAAGTCCATTGACCTTCTCAAAGCGAACTATCGGGATGATTTGTCCACGGATGAGTGGAGACTCGTGGTGAAATTGAAGAATCTCTTCAAGATACAGTGA 4077 42.21 MGRKKPTARDDDSAPAAAHGGGKSKKKTFAVDDDEYSIGTELSEEPQVPEEKVVITGKKKGKKGNSKASQLKEDDDDDDVDGVSEIVITGKKKGKSKKGGTSSAFTAASFGLLEEEGMDDDDESVLTAEKDDDEEEDSAIKFSGKKKSSKSSKKSGFSAVSAFTALNDENDEDVIGDEVRVDEDIDDESVIAFTGKKKSSKGGKKAGSAFTGFSGLDYEDEDRDDDKDGDEDVTSVSFSGKKKKSAKASKKGGNLFSAALADEENDGDVSISEPNKLDNDGVNEDDVNVIAFSGKKKSSKKKSSSTFTALNDENAQGNEVKDVVVPEILNTVSSNLDSDLSNANKMEAVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPTISKPADPPLSSQEAKVENPPEPVAPPEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAAEGNDEKIEEVKTEIIEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERLRKEEEERRRLEELERQAEEAKRRKKEREKEKLLRKKQEGKLLTGKQKEEQRRLEAMRNQILSNAGGLPLSTSDPSAPAKRPKYQTKKTKPAHHQTNGNAQTKAVEHTEEKIQEKDVAETEILESQKIAAVELMHMEEKADVVEATEDNEIQEDEDEDEWDAKSWDDAVVDLSLKSSFADEELESEPENGMKKDTKNGAGAKLAAPAQKGFPSQSIKSQDIENKKKQDEVEVADKGKRKDDAVKKKASVPDATPVPQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTIRNAPILKTMKQQTKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTDEWRLVVKLKNLFKIQ 1358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9304185 9317174 + CrPI670011_09g009230.1 Cre09g0923 507591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0923 1358 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 416 1357 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER)
Cre09g0923 1358 SUPERFAMILY Translation proteins 1225 1357 IPR009000 -
Cre09g0923 1358 NCBIfam small GTP-binding protein domain 771 897 IPR005225 GO:0005525(InterPro)
Cre09g0923 1358 Gene3D - 1108 1214 IPR036925 -
Cre09g0923 1358 MobiDBLite consensus disorder prediction 682 700 - -
Cre09g0923 1358 FunFam eukaryotic translation initiation factor 5B 989 1108 - -
Cre09g0923 1358 Pfam Translation-initiation factor 2 1095 1207 IPR023115 -
Cre09g0923 1358 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1091 1220 IPR036925 -
Cre09g0923 1358 Coils Coil 477 544 - -
Cre09g0923 1358 MobiDBLite consensus disorder prediction 269 283 - -
Cre09g0923 1358 MobiDBLite consensus disorder prediction 362 377 - -
Cre09g0923 1358 Pfam Elongation factor Tu GTP binding domain 769 978 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre09g0923 1358 Pfam Elongation factor Tu domain 4 1228 1301 IPR029459 -
Cre09g0923 1358 Gene3D Translation factors 989 1107 - -
Cre09g0923 1358 Coils Coil 1203 1223 - -
Cre09g0923 1358 MobiDBLite consensus disorder prediction 609 625 - -
Cre09g0923 1358 FunFam Eukaryotic translation initiation factor 5B 1108 1214 - -
Cre09g0923 1358 MobiDBLite consensus disorder prediction 406 427 - -
Cre09g0923 1358 MobiDBLite consensus disorder prediction 681 762 - -
Cre09g0923 1358 CDD aeIF5B_II 990 1100 - -
Cre09g0923 1358 MobiDBLite consensus disorder prediction 109 156 - -
Cre09g0923 1358 CDD IF2_aeIF5B_IV 1229 1324 - -
Cre09g0923 1358 CDD IF2_eIF5B 769 979 - -
Cre09g0923 1358 FunFam Eukaryotic translation initiation factor 5B 1221 1358 - -
Cre09g0923 1358 MobiDBLite consensus disorder prediction 652 669 - -
Cre09g0923 1358 Coils Coil 414 443 - -
Cre09g0923 1358 MobiDBLite consensus disorder prediction 647 669 - -
Cre09g0923 1358 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 766 982 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre09g0923 1358 MobiDBLite consensus disorder prediction 114 136 - -
Cre09g0923 1358 MobiDBLite consensus disorder prediction 334 625 - -
Cre09g0923 1358 Gene3D - 761 988 IPR027417 -
Cre09g0923 1358 Gene3D Translation factors 1221 1358 - -
Cre09g0923 1358 MobiDBLite consensus disorder prediction 334 349 - -
Cre09g0923 1358 MobiDBLite consensus disorder prediction 192 321 - -
Cre09g0923 1358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 1057 IPR027417 -
Cre09g0923 1358 MobiDBLite consensus disorder prediction 724 752 - -
Cre09g0923 1358 MobiDBLite consensus disorder prediction 1 81 - -
Cre09g0923 1358 MobiDBLite consensus disorder prediction 448 561 - -
Cre09g0923 1358 PRINTS GTP-binding elongation factor signature 834 844 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre09g0923 1358 PRINTS GTP-binding elongation factor signature 770 783 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre09g0923 1358 PRINTS GTP-binding elongation factor signature 886 895 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre09g0923 1358 PRINTS GTP-binding elongation factor signature 850 861 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre09g0923 1358 FunFam Eukaryotic translation initiation factor 5B 760 988 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0923 Cre-Chr9:9304185 Cre11g2038 Cre-Chr11:32154129 1.20E-26 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0923 K03243 - csv:101204360 2032.68