Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0925 ATGCTGATGGAACCCAATTTCTCGTCGGCGAAGCCACCGCAGCCGGCGGCGATGGACATCGAACAGATGTCGGAGAATCCTCACCGTGGTTCCCACCACCGCCGCTCCCTCTCCGACACTTCCTTCCGCTTCCCAAACCTCGACGAACTTCTCTTCTTCGACCCTTCAGAGCTCGACCTCTCGATGCTCTCTTCCCCTTCTTCTCCACCTCCTGGCGGCACTGCCATGGCGGTTGATTCGTCTAATGCTAAGTTTTCTGATGACGCCGTTCGCCCTAAGCCGGAGCCGATTGCCTCTGGACCATTCGGTGGTCACTTGCGGAGCTTGTCCATGGACTCTGATTTCTTCAAGAATCTGGACCTTGGTGGTGATAGTGGGGAGATCGATTCTTTGGGGAAGAAGACTCCGGCGAGTGAACAGCGGCCAGTTCGTCATCGACATAGCCTGTCCATGGATGGTTCTTCGTCGTCGTTTGAGGCCGATTCAACCCTAGTGATTGATGGAGTGAAGAAAGCAATGGACCCGGAGAGACTTGCGGAGCTTGCCCTAATTGACCCGAAAAGAGCTAAAAGGATTCTAGCGAACAGACAATCTGCAGCTCGTTCGAAAGAGAGGAAGATACGGTACACGAATGAGCTGGAGAGAAAGGTTCAGACTCTGCAGTCCGAAGCTACCACTCTGTCTGCGCAGGTGACGATTCTACAGAGAGATACAAGTGGATTAACTGTGGAAAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAACAAGCACAACTTCGAGATGCTCTGAGTGAAGCTTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCTGCAGGCCAGGTTGCATCGATCAACGGAAATCTTTTCAACCGACCTCCTCAATATCCTTCATCCCGGCCACCTGTGCACCATTTTAGTAGCTCCCATGCCCAGCAGGGTCAACAGCAGCAGCCACCACCCATGTTGGCTACCAACCAGCAGCAGCAATCAGATCCCAAATGGACAAACTCGTCTCAGCTTCTCAGTCGAAGTCCGGATGGCCAAGCAAAGCCTTAG 1062 52.54 MLMEPNFSSAKPPQPAAMDIEQMSENPHRGSHHRRSLSDTSFRFPNLDELLFFDPSELDLSMLSSPSSPPPGGTAMAVDSSNAKFSDDAVRPKPEPIASGPFGGHLRSLSMDSDFFKNLDLGGDSGEIDSLGKKTPASEQRPVRHRHSLSMDGSSSSFEADSTLVIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTILQRDTSGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVASINGNLFNRPPQYPSSRPPVHHFSSSHAQQGQQQQPPPMLATNQQQQSDPKWTNSSQLLSRSPDGQAKP 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9354657 9357829 + CrPI670011_09g009250.1 Cre09g0925 507593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0925 353 SMART brlzneu 183 247 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0925 353 Pfam bZIP transcription factor 187 239 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0925 353 Gene3D - 186 239 - -
Cre09g0925 353 MobiDBLite consensus disorder prediction 288 353 - -
Cre09g0925 353 SUPERFAMILY Leucine zipper domain 187 238 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0925 353 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 337 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre09g0925 353 Coils Coil 210 230 - -
Cre09g0925 353 MobiDBLite consensus disorder prediction 1 39 - -
Cre09g0925 353 Coils Coil 238 258 - -
Cre09g0925 353 MobiDBLite consensus disorder prediction 84 104 - -
Cre09g0925 353 FunFam Transcription factor VIP1 186 239 - -
Cre09g0925 353 MobiDBLite consensus disorder prediction 126 157 - -
Cre09g0925 353 MobiDBLite consensus disorder prediction 25 39 - -
Cre09g0925 353 MobiDBLite consensus disorder prediction 302 347 - -
Cre09g0925 353 CDD bZIP_plant_RF2 188 237 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0925 353 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 248 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0925 K20557 - - csv:101207973 601.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0556 Cre-Chr2:2661967 Cre09g0925 Cre-Chr9:9354657 4.40E-10 dispersed
Cre08g0642 Cre-Chr8:19356321 Cre09g0925 Cre-Chr9:9354657 9.30E-88 dispersed
Cre09g0925 Cre-Chr9:9354657 Cre11g2174 Cre-Chr11:33454382 4.00E-09 dispersed
Cre09g0925 Cre-Chr9:9354657 Cre02g1236 Cre-Chr2:12535113 2.50E-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g0387 . 15 358 bZIP Transcription Factor Family AT2G35530 67.9 4.5e-105 378.6
Cre09g1104 . 7 350 bZIP Transcription Factor Family AT2G35530 61.9 3.2e-103 372.5
Cre07g0896 . 4 324 bZIP Transcription Factor Family AT2G40620 57.3 1.5e-83 307.0
Cre02g2211 . 59 389 bZIP Transcription Factor Family AT2G40620 50.6 2.1e-69 260.0
Cre02g0814 . 506 630 bZIP Transcription Factor Family AT2G40620 70.4 7.2e-38 155.2
Cre02g0815 . 394 518 bZIP Transcription Factor Family AT2G40620 69.6 1.6e-37 154.1
Cre02g1507 . 1 235 bZIP Transcription Factor Family AT4G35040 55.9 1.2e-55 213.8
Cre02g0767 . 4 245 bZIP Transcription Factor Family AT4G35040 57.4 3.3e-53 205.7
Cre08g1009 . 6 333 bZIP Transcription Factor Family AT5G06950 80.7 1.3e-139 493.0
Cre05g2856 . 19 349 bZIP Transcription Factor Family AT5G06950 76.7 5.9e-132 467.6
Cre08g0479 . 211 536 bZIP Transcription Factor Family AT5G06950 69.6 8.6e-115 410.6
Cre10g1750 . 176 578 bZIP Transcription Factor Family AT5G06950 60.5 3.6e-113 405.2
Cre10g1850 . 219 522 bZIP Transcription Factor Family AT5G06950 58.5 1.1e-90 330.5
Cre01g1119 . 169 452 bZIP Transcription Factor Family AT5G06950 58.2 1.7e-86 316.6
Cre02g2521 . 238 520 bZIP Transcription Factor Family AT5G06950 56.2 1.7e-83 306.6
Cre07g1303 . 78 358 bZIP Transcription Factor Family AT5G06950 54.4 1.9e-74 276.6
Cre11g1250 . 98 390 bZIP Transcription Factor Family AT5G06950 51.5 1.7e-70 263.5
Cre01g1119 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 6.0e-130 461.1
Cre02g2521 . 236 529 bZIP Transcription Factor Family AT1G08320 70.4 2.7e-114 409.1
Cre08g1009 . 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.6e-98 355.1
Cre05g2856 . 62 349 bZIP Transcription Factor Family AT1G08320 61.5 5.3e-94 341.7
Cre10g1850 . 196 522 bZIP Transcription Factor Family AT1G08320 56.9 5.8e-93 338.2
Cre08g0479 . 252 538 bZIP Transcription Factor Family AT1G08320 58.5 2.8e-87 319.3
Cre02g1507 . 1 234 bZIP Transcription Factor Family AT2G16770 60.9 4.9e-62 235.0
Cre02g0767 . 2 245 bZIP Transcription Factor Family AT2G16770 57.1 1.1e-56 217.2
Cre08g1009 . 25 333 bZIP Transcription Factor Family AT5G06960 80.9 3.4e-129 458.4
Cre05g2856 . 39 349 bZIP Transcription Factor Family AT5G06960 74.6 2.4e-119 425.6
Cre08g0479 . 237 536 bZIP Transcription Factor Family AT5G06960 67.7 1.2e-102 370.2
Cre10g1750 . 197 578 bZIP Transcription Factor Family AT5G06960 57.7 8.6e-101 364.0
Cre10g1850 . 205 522 bZIP Transcription Factor Family AT5G06960 58.4 2.6e-89 325.9
Cre01g1119 . 164 452 bZIP Transcription Factor Family AT5G06960 56.3 6.2e-83 304.7
Cre02g2521 . 238 520 bZIP Transcription Factor Family AT5G06960 55.1 9.0e-82 300.8
Cre07g1303 . 53 358 bZIP Transcription Factor Family AT5G06960 51.6 1.7e-72 270.0
Cre02g0815 . 1 569 bZIP Transcription Factor Family AT4G38900 57.6 8.8e-133 471.1
Cre02g0814 . 112 628 bZIP Transcription Factor Family AT4G38900 59.9 1.5e-132 470.3
Cre08g0642 . 96 280 bZIP Transcription Factor Family AT4G38900 55.2 1.3e-38 158.3
Cre09g0925 . 101 282 bZIP Transcription Factor Family AT4G38900 55.4 1.4e-37 154.8
Cre07g0896 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 9.1e-37 152.1
Cre05g0883 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.2e-36 151.8
Cre02g0815 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 1.0e-101 367.9
Cre02g0814 . 175 646 bZIP Transcription Factor Family AT2G21230 53.9 4.6e-99 359.0
Cre09g0925 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 4.6e-38 156.4
Cre02g0556 . 1 249 bZIP Transcription Factor Family AT2G42380 57.0 8.7e-57 217.6
Cre08g1544 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 3.5e-86 315.8
Cre08g0653 . 124 315 bZIP Transcription Factor Family AT1G03970 53.0 1.3e-36 150.6
Cre04g1551 . 571 920 bZIP Transcription Factor Family AT4G36730 50.3 1.5e-60 230.3
Cre08g1009 . 6 333 bZIP Transcription Factor Family AT3G12250 80.8 1.3e-139 493.0
Cre05g2856 . 19 349 bZIP Transcription Factor Family AT3G12250 76.1 1.9e-130 462.6
Cre08g0479 . 211 536 bZIP Transcription Factor Family AT3G12250 68.7 9.5e-114 407.1
Cre10g1750 . 176 578 bZIP Transcription Factor Family AT3G12250 61.0 4.7e-113 404.8
Cre10g1850 . 219 522 bZIP Transcription Factor Family AT3G12250 58.5 3.3e-90 328.9
Cre01g1119 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 1.6e-84 310.1
Cre02g2521 . 238 520 bZIP Transcription Factor Family AT3G12250 56.8 7.8e-84 307.8
Cre07g1303 . 47 358 bZIP Transcription Factor Family AT3G12250 51.9 1.1e-74 277.3
Cre08g0479 . 91 536 bZIP Transcription Factor Family AT1G68640 62.0 1.1e-139 493.8
Cre08g1009 . 6 333 bZIP Transcription Factor Family AT1G68640 67.4 2.4e-115 412.9
Cre05g2856 . 16 349 bZIP Transcription Factor Family AT1G68640 64.4 5.1e-110 395.2
Cre10g1750 . 174 578 bZIP Transcription Factor Family AT1G68640 54.7 1.3e-102 370.5
Cre10g1850 . 207 522 bZIP Transcription Factor Family AT1G68640 54.7 2.7e-87 319.7
Cre01g1119 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 1.3e-84 310.8
Cre02g2521 . 216 520 bZIP Transcription Factor Family AT1G68640 53.3 1.1e-80 297.7
Cre08g0642 . 9 319 bZIP Transcription Factor Family AT1G43700 53.7 6.0e-63 238.4
Cre09g0925 . 12 293 bZIP Transcription Factor Family AT1G43700 52.5 6.0e-63 238.4
Cre05g0183 . 35 432 bZIP Transcription Factor Family AT2G46270 50.4 9.1e-78 287.7
Cre05g0883 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.9e-113 406.4
Cre05g0886 . 43 298 bZIP Transcription Factor Family AT2G31370 67.9 1.6e-83 307.0
Cre07g0896 . 25 248 bZIP Transcription Factor Family AT2G31370 50.6 7.1e-47 185.3
Cre09g0925 . 128 284 bZIP Transcription Factor Family AT2G31370 64.6 4.0e-42 169.5
Cre08g0800 . 12 316 bZIP Transcription Factor Family AT3G56850 56.5 1.2e-70 263.8
Cre10g0387 . 50 360 bZIP Transcription Factor Family AT1G32150 67.5 8.6e-98 354.4
Cre09g1104 . 7 350 bZIP Transcription Factor Family AT1G32150 62.0 3.1e-95 345.9
Cre05g0883 . 10 365 bZIP Transcription Factor Family AT1G06070 70.3 1.4e-125 446.8
Cre05g0886 . 1 298 bZIP Transcription Factor Family AT1G06070 67.7 2.3e-96 349.7
Cre09g0925 . 138 292 bZIP Transcription Factor Family AT1G06070 63.1 6.1e-41 165.6
Cre02g0815 . 383 514 bZIP Transcription Factor Family AT1G06070 67.9 8.3e-38 155.2
Cre02g0814 . 494 638 bZIP Transcription Factor Family AT1G06070 63.9 1.1e-37 154.8
Cre08g1544 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 3.5e-86 315.8
Cre10g0387 . 15 358 bZIP Transcription Factor Family AT2G35530 67.9 4.5e-105 378.6
Cre09g1104 . 7 350 bZIP Transcription Factor Family AT2G35530 61.9 3.2e-103 372.5
Cre07g0896 . 4 324 bZIP Transcription Factor Family AT2G40620 57.3 1.5e-83 307.0
Cre02g2211 . 59 389 bZIP Transcription Factor Family AT2G40620 50.6 2.1e-69 260.0
Cre02g0814 . 506 630 bZIP Transcription Factor Family AT2G40620 70.4 7.2e-38 155.2
Cre02g0815 . 394 518 bZIP Transcription Factor Family AT2G40620 69.6 1.6e-37 154.1
Cre02g1507 . 1 235 bZIP Transcription Factor Family AT4G35040 55.9 1.2e-55 213.8
Cre02g0767 . 4 245 bZIP Transcription Factor Family AT4G35040 57.4 3.3e-53 205.7
Cre08g1009 . 6 333 bZIP Transcription Factor Family AT5G06950 80.7 1.3e-139 493.0
Cre05g2856 . 19 349 bZIP Transcription Factor Family AT5G06950 76.7 5.9e-132 467.6
Cre08g0479 . 211 536 bZIP Transcription Factor Family AT5G06950 69.6 8.6e-115 410.6
Cre10g1750 . 176 578 bZIP Transcription Factor Family AT5G06950 60.5 3.6e-113 405.2
Cre10g1850 . 219 522 bZIP Transcription Factor Family AT5G06950 58.5 1.1e-90 330.5
Cre01g1119 . 169 452 bZIP Transcription Factor Family AT5G06950 58.2 1.7e-86 316.6
Cre02g2521 . 238 520 bZIP Transcription Factor Family AT5G06950 56.2 1.7e-83 306.6
Cre07g1303 . 78 358 bZIP Transcription Factor Family AT5G06950 54.4 1.9e-74 276.6
Cre11g1250 . 98 390 bZIP Transcription Factor Family AT5G06950 51.5 1.7e-70 263.5
Cre01g1119 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 6.0e-130 461.1
Cre02g2521 . 236 529 bZIP Transcription Factor Family AT1G08320 70.4 2.7e-114 409.1
Cre08g1009 . 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.6e-98 355.1
Cre05g2856 . 62 349 bZIP Transcription Factor Family AT1G08320 61.5 5.3e-94 341.7
Cre10g1850 . 196 522 bZIP Transcription Factor Family AT1G08320 56.9 5.8e-93 338.2
Cre08g0479 . 252 538 bZIP Transcription Factor Family AT1G08320 58.5 2.8e-87 319.3
Cre02g1507 . 1 234 bZIP Transcription Factor Family AT2G16770 60.9 4.9e-62 235.0
Cre02g0767 . 2 245 bZIP Transcription Factor Family AT2G16770 57.1 1.1e-56 217.2
Cre08g1009 . 25 333 bZIP Transcription Factor Family AT5G06960 80.9 3.4e-129 458.4
Cre05g2856 . 39 349 bZIP Transcription Factor Family AT5G06960 74.6 2.4e-119 425.6
Cre08g0479 . 237 536 bZIP Transcription Factor Family AT5G06960 67.7 1.2e-102 370.2
Cre10g1750 . 197 578 bZIP Transcription Factor Family AT5G06960 57.7 8.6e-101 364.0
Cre10g1850 . 205 522 bZIP Transcription Factor Family AT5G06960 58.4 2.6e-89 325.9
Cre01g1119 . 164 452 bZIP Transcription Factor Family AT5G06960 56.3 6.2e-83 304.7
Cre02g2521 . 238 520 bZIP Transcription Factor Family AT5G06960 55.1 9.0e-82 300.8
Cre07g1303 . 53 358 bZIP Transcription Factor Family AT5G06960 51.6 1.7e-72 270.0
Cre02g0815 . 1 569 bZIP Transcription Factor Family AT4G38900 57.6 8.8e-133 471.1
Cre02g0814 . 112 628 bZIP Transcription Factor Family AT4G38900 59.9 1.5e-132 470.3
Cre08g0642 . 96 280 bZIP Transcription Factor Family AT4G38900 55.2 1.3e-38 158.3
Cre09g0925 . 101 282 bZIP Transcription Factor Family AT4G38900 55.4 1.4e-37 154.8
Cre07g0896 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 9.1e-37 152.1
Cre05g0883 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.2e-36 151.8
Cre02g0815 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 1.0e-101 367.9
Cre02g0814 . 175 646 bZIP Transcription Factor Family AT2G21230 53.9 4.6e-99 359.0
Cre09g0925 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 4.6e-38 156.4
Cre02g0556 . 1 249 bZIP Transcription Factor Family AT2G42380 57.0 8.7e-57 217.6
Cre08g0653 . 124 315 bZIP Transcription Factor Family AT1G03970 53.0 1.3e-36 150.6
Cre04g1551 . 571 920 bZIP Transcription Factor Family AT4G36730 50.3 1.5e-60 230.3
Cre08g1009 . 6 333 bZIP Transcription Factor Family AT3G12250 80.8 1.3e-139 493.0
Cre05g2856 . 19 349 bZIP Transcription Factor Family AT3G12250 76.1 1.9e-130 462.6
Cre08g0479 . 211 536 bZIP Transcription Factor Family AT3G12250 68.7 9.5e-114 407.1
Cre10g1750 . 176 578 bZIP Transcription Factor Family AT3G12250 61.0 4.7e-113 404.8
Cre10g1850 . 219 522 bZIP Transcription Factor Family AT3G12250 58.5 3.3e-90 328.9
Cre01g1119 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 1.6e-84 310.1
Cre02g2521 . 238 520 bZIP Transcription Factor Family AT3G12250 56.8 7.8e-84 307.8
Cre07g1303 . 47 358 bZIP Transcription Factor Family AT3G12250 51.9 1.1e-74 277.3
Cre08g0479 . 91 536 bZIP Transcription Factor Family AT1G68640 62.0 1.1e-139 493.8
Cre08g1009 . 6 333 bZIP Transcription Factor Family AT1G68640 67.4 2.4e-115 412.9
Cre05g2856 . 16 349 bZIP Transcription Factor Family AT1G68640 64.4 5.1e-110 395.2
Cre10g1750 . 174 578 bZIP Transcription Factor Family AT1G68640 54.7 1.3e-102 370.5
Cre10g1850 . 207 522 bZIP Transcription Factor Family AT1G68640 54.7 2.7e-87 319.7
Cre01g1119 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 1.3e-84 310.8
Cre02g2521 . 216 520 bZIP Transcription Factor Family AT1G68640 53.3 1.1e-80 297.7
Cre08g0642 . 9 319 bZIP Transcription Factor Family AT1G43700 53.7 6.0e-63 238.4
Cre09g0925 . 12 293 bZIP Transcription Factor Family AT1G43700 52.5 6.0e-63 238.4
Cre05g0183 . 35 432 bZIP Transcription Factor Family AT2G46270 50.4 9.1e-78 287.7
Cre05g0883 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.9e-113 406.4
Cre05g0886 . 43 298 bZIP Transcription Factor Family AT2G31370 67.9 1.6e-83 307.0
Cre07g0896 . 25 248 bZIP Transcription Factor Family AT2G31370 50.6 7.1e-47 185.3
Cre09g0925 . 128 284 bZIP Transcription Factor Family AT2G31370 64.6 4.0e-42 169.5
Cre08g0800 . 12 316 bZIP Transcription Factor Family AT3G56850 56.5 1.2e-70 263.8
Cre10g0387 . 50 360 bZIP Transcription Factor Family AT1G32150 67.5 8.6e-98 354.4
Cre09g1104 . 7 350 bZIP Transcription Factor Family AT1G32150 62.0 3.1e-95 345.9
Cre05g0883 . 10 365 bZIP Transcription Factor Family AT1G06070 70.3 1.4e-125 446.8
Cre05g0886 . 1 298 bZIP Transcription Factor Family AT1G06070 67.7 2.3e-96 349.7
Cre09g0925 . 138 292 bZIP Transcription Factor Family AT1G06070 63.1 6.1e-41 165.6
Cre02g0815 . 383 514 bZIP Transcription Factor Family AT1G06070 67.9 8.3e-38 155.2
Cre02g0814 . 494 638 bZIP Transcription Factor Family AT1G06070 63.9 1.1e-37 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001960 2 2 1 0 1 2 3 2 2 2 2 2 3 2 2 4 2 3 3 2 3 2 1 2 2 2 2 5 4 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54342 PF00170 bZIP_1 1.10E-07 CL0018 Cre TF