Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0925 ATGCTGATGGAACCCAATTTCTCGTCGGCGAAGCCACCGCAGCCGGCGGCGATGGACATCGAACAGATGTCGGAGAATCCTCACCGTGGTTCCCACCACCGCCGCTCCCTCTCCGACACTTCCTTCCGCTTCCCAAACCTCGACGAACTTCTCTTCTTCGACCCTTCAGAGCTCGACCTCTCGATGCTCTCTTCCCCTTCTTCTCCACCTCCTGGCGGCACTGCCATGGCGGTTGATTCGTCTAATGCTAAGTTTTCTGATGACGCCGTTCGCCCTAAGCCGGAGCCGATTGCCTCTGGACCATTCGGTGGTCACTTGCGGAGCTTGTCCATGGACTCTGATTTCTTCAAGAATCTGGACCTTGGTGGTGATAGTGGGGAGATCGATTCTTTGGGGAAGAAGACTCCGGCGAGTGAACAGCGGCCAGTTCGTCATCGACATAGCCTGTCCATGGATGGTTCTTCGTCGTCGTTTGAGGCCGATTCAACCCTAGTGATTGATGGAGTGAAGAAAGCAATGGACCCGGAGAGACTTGCGGAGCTTGCCCTAATTGACCCGAAAAGAGCTAAAAGGATTCTAGCGAACAGACAATCTGCAGCTCGTTCGAAAGAGAGGAAGATACGGTACACGAATGAGCTGGAGAGAAAGGTTCAGACTCTGCAGTCCGAAGCTACCACTCTGTCTGCGCAGGTGACGATTCTACAGAGAGATACAAGTGGATTAACTGTGGAAAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAACAAGCACAACTTCGAGATGCTCTGAGTGAAGCTTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCTGCAGGCCAGGTTGCATCGATCAACGGAAATCTTTTCAACCGACCTCCTCAATATCCTTCATCCCGGCCACCTGTGCACCATTTTAGTAGCTCCCATGCCCAGCAGGGTCAACAGCAGCAGCCACCACCCATGTTGGCTACCAACCAGCAGCAGCAATCAGATCCCAAATGGACAAACTCGTCTCAGCTTCTCAGTCGAAGTCCGGATGGCCAAGCAAAGCCTTAG 1062 52.54 MLMEPNFSSAKPPQPAAMDIEQMSENPHRGSHHRRSLSDTSFRFPNLDELLFFDPSELDLSMLSSPSSPPPGGTAMAVDSSNAKFSDDAVRPKPEPIASGPFGGHLRSLSMDSDFFKNLDLGGDSGEIDSLGKKTPASEQRPVRHRHSLSMDGSSSSFEADSTLVIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTILQRDTSGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVASINGNLFNRPPQYPSSRPPVHHFSSSHAQQGQQQQPPPMLATNQQQQSDPKWTNSSQLLSRSPDGQAKP 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9354657 9357829 + CrPI670011_09g009250.1 Cre09g0925 507593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0925 353 SMART brlzneu 183 247 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0925 353 Pfam bZIP transcription factor 187 239 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0925 353 Gene3D - 186 239 - -
Cre09g0925 353 MobiDBLite consensus disorder prediction 288 353 - -
Cre09g0925 353 SUPERFAMILY Leucine zipper domain 187 238 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0925 353 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 337 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre09g0925 353 Coils Coil 210 230 - -
Cre09g0925 353 MobiDBLite consensus disorder prediction 1 39 - -
Cre09g0925 353 Coils Coil 238 258 - -
Cre09g0925 353 MobiDBLite consensus disorder prediction 84 104 - -
Cre09g0925 353 FunFam Transcription factor VIP1 186 239 - -
Cre09g0925 353 MobiDBLite consensus disorder prediction 126 157 - -
Cre09g0925 353 MobiDBLite consensus disorder prediction 25 39 - -
Cre09g0925 353 MobiDBLite consensus disorder prediction 302 347 - -
Cre09g0925 353 CDD bZIP_plant_RF2 188 237 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0925 353 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 248 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0556 Cre-Chr2:2661967 Cre09g0925 Cre-Chr9:9354657 4.40E-10 dispersed
Cre08g0642 Cre-Chr8:19356321 Cre09g0925 Cre-Chr9:9354657 9.30E-88 dispersed
Cre09g0925 Cre-Chr9:9354657 Cre11g2174 Cre-Chr11:33454382 4.00E-09 dispersed
Cre09g0925 Cre-Chr9:9354657 Cre02g1236 Cre-Chr2:12535113 2.50E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54342 PF00170 bZIP_1 1.10E-07 CL0018 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0925 K20557 - csv:101207973 601.282