Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0936 ATGGTGGCGCATCATAATTTAAAAAATGGGAAAGCAAGAACAAATTACCTACGCTCATGTTTGAACCAAGTTTGGATAATCCCCTGCCTCCTCATATTGCTCATTGCCATTGCTTGCACCTACACACTCCTCTTCCCAAACATCCACGAAATCCTTCAGATCTACAACTTCACCGCAACATCCCAAAGCATAAAAAGCAGTAGCAGCACCGAATCCGTCGATTGCAACGTGTTCGATGGGCAGTGGGTGGAAGACAACTCTAGGTACCCCATCTACAACTCGACGAATTGTCCCTTCGCAGAGAGAGGTTTCAGTTGCTTTGAAAATGGGCGGAAGGATAAGGAGTATTTGAGATGGCGGTGGAAGCCAAAGGAGTGTGAGATCCCCAGGTTTGATGCTGGAAAAGCATTGGAGATGTTGCGAGGGAAGCGGGTGGTGTTCGTTGGAGACTCGCAGAGTCGAACGCAGTGGGAATCGTGGATTTGCATGTTGATGGAGGGAGTGAAGAAGAAGGAAAGCGTATATGAGATCAATGGGAGTGAGATAACGAAGACAATTAGACATTTAGGAGTGAGATTTAGAGATCATAATATCACTGTGGATTTCTGTAGGTCTGTGCTCTTGATGAAGAAGGATTATAAGGTGCCTGCGGGTGCACCTACAAACGTTAGGATGATCGTTCGATTGGATCAGGTGGATGATATTAGTAATCAGTGGGTTGATTCTGATTTGTTGGTTTTTAATACAGGTGGTTGGTGGACCCAAAATCGACTTTTCAATGAGATGAGGTGTTTCTTCCAAATAAGGGACTCATTGGAACTTGGAATGTCTGTGATGGATGGGTACAAGATGGCATTAAATACTTGGGCTGATTGGGCCGAAACTAATATCAACCCCAATAGAACCACCGTTTTCTTTCGCACTATTGAATATTCTACTCATTTGAGAGGTCCTAATCATTGCGATGAGAGTCAACAACCATTAAAAGAAACAAAAGGGAGAGACAAGAATGAAAAATAA 1020 43.63 MVAHHNLKNGKARTNYLRSCLNQVWIIPCLLILLIAIACTYTLLFPNIHEILQIYNFTATSQSIKSSSSTESVDCNVFDGQWVEDNSRYPIYNSTNCPFAERGFSCFENGRKDKEYLRWRWKPKECEIPRFDAGKALEMLRGKRVVFVGDSQSRTQWESWICMLMEGVKKKESVYEINGSEITKTIRHLGVRFRDHNITVDFCRSVLLMKKDYKVPAGAPTNVRMIVRLDQVDDISNQWVDSDLLVFNTGGWWTQNRLFNEMRCFFQIRDSLELGMSVMDGYKMALNTWADWAETNINPNRTTVFFRTIEYSTHLRGPNHCDESQQPLKETKGRDKNEK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9507637 9509761 + CrPI670011_09g009360.1 Cre09g0936 507604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0936 339 MobiDBLite consensus disorder prediction 317 339 - -
Cre09g0936 339 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 38 331 IPR029962 GO:0005794(PANTHER)|GO:0016413(PANTHER)|GO:0016413(InterPro)
Cre09g0936 339 Pfam PMR5 N terminal Domain 74 127 IPR025846 -
Cre09g0936 339 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 128 334 IPR026057 GO:0016740(InterPro)
Cre09g0936 339 MobiDBLite consensus disorder prediction 323 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0936 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0936 Cre-Chr9:9507637 Cre11g1580 Cre-Chr11:25734679 7.30E-53 dispersed
Cre09g0935 Cre-Chr9:9503582 Cre09g0936 Cre-Chr9:9507637 9.80E-180 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1212 . . . . . . . . . . . . Car01g00885 . . . . . . . . . . . . . . . . . . Cone4ag1521 . . . . . . . . . . . . . . . . Cmo01g01032 . . . . . . Cpe02g00898 Bhi09g01514 . . . . . . Cla09g00915 Cam09g0967 Cec09g0972 Cco09g0978 . . Cre09g0936 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008701 0 1 0 0 0 2 1 2 2 1 2 2 1 1 1 1 2 1 1 2 1 1 1 3 1 2 1 1 1 0 35