Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0945 ATGTTCAATATATCAATATCTTTATATTGCGACTCTGATTCTCTCTCCTCTCTTTCTCTCTCTCTCTTTCCCCTCCGCCGGAACTCCGTCGTCAGCACGTTTTCCGTCCAAGAGTCCTCTTTTTCCTCTATTATTCCGGCGGTTTTCCGTCGTACTTTTCCTTTTCCGGCAGAATCTCTGTTTCTTTGCCGGAGAGTTGGAGTAGATGTCCTGTGGTTTGGCTTTACTTGGAATGGAGATCTTGTTAGCTACGGGAATGCCAACCGTGACACTGAGCAGGCACTAATTGCTTTGAAGAAGGGTTCTCAACTCCTCAAGTATGGTCGTAAGGGGAAACCAAAATTTTGTCCATTTAGACTTTCTAATGATGAGTCATCTTTAATTTGGATTTCAACTACTGGTGAAAAGAGTTTGAAGTTAGCTTCTGTATCGAGAATTATTCCTGGACAAAGAACTGCTGTGTTCCAACGATATCTACGACCTGAGAAGGATTATTTATCATTTTCTCTGATTTACAACAATGGAAAACGGTCTCTTGATCTGATTTGTAAGGATAAAGTCGAGGCTGAAATTTGGATAGCGGGTCTGAAAGCATTAGTTGGTTCTGGTGATGGTGGGCGTTCTAAGATTGATGGATGGAATGATGGAGGCCTCTATCAAGATGACAACAGTGACTTAACTTCAAGTAGCCCAAGTGACAGCTCCAATAGTGTCACTAGAGATATTAGCTCTCCTGAGGTCTGTGTTACTTTTAGTCCAAACAAATCTCCAACGAGTGTTAGGTCTGAGAACTCTACAAGGTCACATGTGCCATTGAACCAGACAAATATGCAAGCTAAAGGATCTAGTTCAGATATTTTTCGAGTTAGTGTTTCAAGTGCTCCTAGCTCCTCCAGTCATGGCTCTACACCAGATGACTGTGATGCTCTAGGAGATATATACATATGGGGTGAGGTTATTAGTGATAATTTTATGAAGCCTGGGGCTGATAGAGCTATTAGTGTGAGCTCAAGGACAGATGTGCTACTTCCAAAGCCATTAGAGTCCAATATTGTTCTAGATGCACAACATATAGCCTGTGGTGTCAGGCATTCTGCGATAGTCACGAGGCAAGGGGAGGTCTTTACATGGGGTGAGGAATCTGGAGGAAGGCTTGGCCTGGGAATGGGGAAAGATGTAACACAACCTCGCCTTGTTGAAGCCTTGGCAGCTACTACAGTTGATCTTGTGGCATGTGGAGAGTTCCATACCTGTGCTGTTACAATGGATGGGGAGCTTTACACATGGGGAGATGGTGTACATAATGCTGGGCTTCTTGGTAATGGAACTGATGTCAGCCATTGGATGCCAAAGAGAATCTCAGGTATTCTTGAGGGGCTTCAAGTTGCATTTGTAGCATGTGGTCCGTGGCATACAGCATTGATCTCATCTATGGGGCAACTATTCACCTTTGGCGATGGTACTTTTGGGGTTTTGGGTCATGGTGATAAAAAAAGCATTTCATATCCGAGAGAAGTGGAGTCCTTAACAGGCTTGAGGACAATTGCTGTTGCATGCGGAGTGTGGCATACCGCTGCTGTGGTAGAAGTAATGACACAATCTAGTACAAGCATGTCGTCAGGTAAATTGTTTACATGGGGTGATGGAGACAAGAATCGTTTAGGACATGGAGACAGGGAACCCCGGCTTAAACCTACATGTGTTCCAGCACTAATTGACTACAATTTTCATAAAATTGCTTGTGGTCACAGCATAACTGTTGGATTGACAACATCAGGACAAGTTTTCACAGTTGGAAGTTCAGTTTATGGTCAACTTGGAAATCCCCTTGCTGATGGAAAGCAACCATGCTTGGTGGAAGATAAGCTTTCCGGGGAGTGTGCTGAAGAGGTTGCTTGTGGTGCGTATCATGTGATGGTACTTACCTCCAAAAATGAAGTTTATACATGGGGAAAAGGTGCAAATGGGAGGTTAGGCCATGGAGACGTTGAGGATCGGAAATCACCAACTTTGGTTGAATCTTTGAAGGATAAACATGTCAAAATCATTGCTTGTGGTTCTAACTACTCCGCAGCTATTTGTCTACACAAATCATTGTCAGGCACAGAGCAGTCACAATGCTCTGCTTGTAGACAGGCATTTGGTTTCACAAGAAAGAGGCACAACTGTTACAACTGTGGACTTGTGCACTGCCACTCGTGTAGTTCCAAAAAAGCATTAAGAGCTGCCCTGGCTCCTACTCCTAGGAAATCTTATCGTGTATGTGATTCTTGTTATGCCAAATTGAGCAAGGCGTCAGAATCTGGAATTAATTACCGGAAAAATGCTGTTCCCCGCCTGTCAGGTGAGAACAGGGATAAGCTGGACAAGAGTGACACAAGACCTCCTAAAACAGCCCTTTCAAATATGGATCTGATAAAACAACTCGATAGCAAAGCAGCAAAGCAAGGGAAGAGAACAGATACATTCTCCATTGCTCGCCCCACTCAAGCACATACTCTTCTTCAACTCAAAGATGGTCCAAATACTGTTGATATTCGGCGACTAGCTCCCAAGCCAATTCCTATGGCTAATGGAGTAAATTCCAGATCTGTGTCACCTTTGTCAAGGAGATCTAGTCCGCCGAGGTCTGCTACACCTGTGCCTACAGCATCAGGACTTTCCTTCTCCAAAGGTATAGCGGATAGCTTGAAGAAAACAAACGAACTCTTAAATCAAGAGGTTCTAATGCTGCGTGCACAGGTTGAGAGCCTGAGGAAGAGATGTGAACTTCAAGAATTAGAACTTCGGAAGTCAGAGAAGAAAGCACAAGAAGCCATTGCATTGGCTGCAGAGGAATCTGCTAAATCCAAAGCGGCAAAAGAAGTTATTACATCACTAACTGCTCAGATTAAACATATGGCCGAAAGGTTACCTGATGGAGTAAAAATGGGTCTTCCTGGAATTAATGACTCTGAAAACATGAGACCATTGTATGTTCCAAATGGTATGGAGCAAAATGGTGCCCACCATTTAGCTTCCAATGGAGAGCGTCTTTCAGTATCAGATTCACACAGCTCCTTGTCCTTGGCTTCTTCAGTTGCAACTGATTATTCCTTGAGTAACGGAATTCAAGGTCTAGCTAATGCATCTGGAGAGTTCCCTGCAAGTAATGAAACTAACTCAGCCTCAGAGCCAGGGCGATTTACCTCTGATGGGACAGATGATGATCCAGATGTAAGACTCTCTTATGGTCATAGAGGTGTTTGGGAAAGCCGCCGCAGTAGCAGCATGTCAGAAGGAGCAGATAACTCGGGCCCTTTACTAGACAGTGAGAGTAACACAAGATCAAGAAGTTCTGCATTGCCAGGAAATGACAATCAAGTTGAGGCTGAATGGATTGAGCAATATGAACCTGGTGTCTACATAACTTTGACGGCACTTCGTAATGGGACTAGAGATCTTAAACGAGTGCGCTTCAGTCGGAGGCGATTTGGGGAGCACCAAGCAGAGAGTTGGTGGTCAGAAAATCGTGATAAAGTCTACGAGAAATATAATGGACAGAGAGAGAGCTTTTGGCAGCAGTCTCTTATTAAGGCATCCAGGAGGTAG 3591 44.08 MFNISISLYCDSDSLSSLSLSLFPLRRNSVVSTFSVQESSFSSIIPAVFRRTFPFPAESLFLCRRVGVDVLWFGFTWNGDLVSYGNANRDTEQALIALKKGSQLLKYGRKGKPKFCPFRLSNDESSLIWISTTGEKSLKLASVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEIWIAGLKALVGSGDGGRSKIDGWNDGGLYQDDNSDLTSSSPSDSSNSVTRDISSPEVCVTFSPNKSPTSVRSENSTRSHVPLNQTNMQAKGSSSDIFRVSVSSAPSSSSHGSTPDDCDALGDIYIWGEVISDNFMKPGADRAISVSSRTDVLLPKPLESNIVLDAQHIACGVRHSAIVTRQGEVFTWGEESGGRLGLGMGKDVTQPRLVEALAATTVDLVACGEFHTCAVTMDGELYTWGDGVHNAGLLGNGTDVSHWMPKRISGILEGLQVAFVACGPWHTALISSMGQLFTFGDGTFGVLGHGDKKSISYPREVESLTGLRTIAVACGVWHTAAVVEVMTQSSTSMSSGKLFTWGDGDKNRLGHGDREPRLKPTCVPALIDYNFHKIACGHSITVGLTTSGQVFTVGSSVYGQLGNPLADGKQPCLVEDKLSGECAEEVACGAYHVMVLTSKNEVYTWGKGANGRLGHGDVEDRKSPTLVESLKDKHVKIIACGSNYSAAICLHKSLSGTEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPTPRKSYRVCDSCYAKLSKASESGINYRKNAVPRLSGENRDKLDKSDTRPPKTALSNMDLIKQLDSKAAKQGKRTDTFSIARPTQAHTLLQLKDGPNTVDIRRLAPKPIPMANGVNSRSVSPLSRRSSPPRSATPVPTASGLSFSKGIADSLKKTNELLNQEVLMLRAQVESLRKRCELQELELRKSEKKAQEAIALAAEESAKSKAAKEVITSLTAQIKHMAERLPDGVKMGLPGINDSENMRPLYVPNGMEQNGAHHLASNGERLSVSDSHSSLSLASSVATDYSLSNGIQGLANASGEFPASNETNSASEPGRFTSDGTDDDPDVRLSYGHRGVWESRRSSSMSEGADNSGPLLDSESNTRSRSSALPGNDNQVEAEWIEQYEPGVYITLTALRNGTRDLKRVRFSRRRFGEHQAESWWSENRDKVYEKYNGQRESFWQQSLIKASRR 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9598185 9606206 - CrPI670011_09g009450.1 Cre09g0945 507613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0945 1196 SUPERFAMILY FYVE/PHD zinc finger 701 768 IPR011011 -
Cre09g0945 1196 MobiDBLite consensus disorder prediction 1043 1117 - -
Cre09g0945 1196 Pfam Pleckstrin homology domain 92 201 IPR001849 -
Cre09g0945 1196 SUPERFAMILY PH domain-like 90 200 - -
Cre09g0945 1196 MobiDBLite consensus disorder prediction 859 889 - -
Cre09g0945 1196 FunFam PH, RCC1 and FYVE domains-containing protein 1 532 702 - -
Cre09g0945 1196 MobiDBLite consensus disorder prediction 1063 1081 - -
Cre09g0945 1196 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 479 530 IPR000408 -
Cre09g0945 1196 CDD FYVE_like_SF 706 759 - -
Cre09g0945 1196 Pfam Transcription factor regulating root and shoot growth via Pin3 1123 1178 IPR013591 -
Cre09g0945 1196 Gene3D - 534 709 IPR009091 -
Cre09g0945 1196 SMART fyve_4 695 764 IPR000306 GO:0046872(InterPro)
Cre09g0945 1196 Coils Coil 894 942 - -
Cre09g0945 1196 MobiDBLite consensus disorder prediction 1043 1062 - -
Cre09g0945 1196 MobiDBLite consensus disorder prediction 220 284 - -
Cre09g0945 1196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 710 769 IPR013083 -
Cre09g0945 1196 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 593 644 IPR000408 -
Cre09g0945 1196 MobiDBLite consensus disorder prediction 852 889 - -
Cre09g0945 1196 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 465 475 IPR000408 -
Cre09g0945 1196 Pfam Regulator of chromosome condensation (RCC1) repeat 540 588 IPR000408 -
Cre09g0945 1196 Pfam Regulator of chromosome condensation (RCC1) repeat 646 693 IPR000408 -
Cre09g0945 1196 Pfam Regulator of chromosome condensation (RCC1) repeat 423 475 IPR000408 -
Cre09g0945 1196 Pfam Regulator of chromosome condensation (RCC1) repeat 479 527 IPR000408 -
Cre09g0945 1196 Pfam Regulator of chromosome condensation (RCC1) repeat 592 641 IPR000408 -
Cre09g0945 1196 Pfam Regulator of chromosome condensation (RCC1) repeat 371 420 IPR000408 -
Cre09g0945 1196 Pfam FYVE zinc finger 703 763 IPR000306 GO:0046872(InterPro)
Cre09g0945 1196 Gene3D - 235 533 IPR009091 -
Cre09g0945 1196 Pfam Transcription factor BRX N-terminal domain 945 975 IPR027988 -
Cre09g0945 1196 MobiDBLite consensus disorder prediction 1083 1117 - -
Cre09g0945 1196 CDD PH_PLC_plant-like 89 200 - -
Cre09g0945 1196 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 424 478 IPR000408 -
Cre09g0945 1196 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 541 592 IPR000408 -
Cre09g0945 1196 SUPERFAMILY RCC1/BLIP-II 310 697 IPR009091 -
Cre09g0945 1196 PRINTS Chromosome condensation regulator RCC1 signature 640 661 IPR000408 -
Cre09g0945 1196 PRINTS Chromosome condensation regulator RCC1 signature 582 600 IPR000408 -
Cre09g0945 1196 PRINTS Chromosome condensation regulator RCC1 signature 481 495 IPR000408 -
Cre09g0945 1196 PRINTS Chromosome condensation regulator RCC1 signature 424 440 IPR000408 -
Cre09g0945 1196 PRINTS Chromosome condensation regulator RCC1 signature 374 390 IPR000408 -
Cre09g0945 1196 PRINTS Chromosome condensation regulator RCC1 signature 465 481 IPR000408 -
Cre09g0945 1196 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 701 763 IPR017455 -
Cre09g0945 1196 FunFam PH, RCC1 and FYVE domains-containing protein 1 282 531 - -
Cre09g0945 1196 MobiDBLite consensus disorder prediction 779 794 - -
Cre09g0945 1196 MobiDBLite consensus disorder prediction 773 804 - -
Cre09g0945 1196 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 372 423 IPR000408 -
Cre09g0945 1196 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 233 1153 IPR051210 -
Cre09g0945 1196 ProSiteProfiles BRX domain profile. 1124 1179 IPR013591 -
Cre09g0945 1196 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 645 696 IPR000408 -
Cre09g0945 1196 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 517 527 IPR000408 -
Cre09g0945 1196 Gene3D - 89 204 IPR011993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0945 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0175 Cre-Chr4:4676913 Cre09g0945 Cre-Chr9:9598185 3.90E-31 dispersed
Cre08g0617 Cre-Chr8:19107697 Cre09g0945 Cre-Chr9:9598185 0.00E+00 dispersed
Cre09g0079 Cre-Chr9:1071346 Cre09g0945 Cre-Chr9:9598185 2.30E-15 dispersed
Cre09g0945 Cre-Chr9:9598185 Cre10g1516 Cre-Chr10:29112875 3.9e-311 dispersed
Cre09g0945 Cre-Chr9:9598185 Cre04g0892 Cre-Chr4:27570824 9.60E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83