Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0962 ATGGCGCCACTGAATTCGAAAAATTCGCAACTGTCGCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCACTCTCCTCCTTTTCTTCACACACGAAATCCGGATCCATCTCCAATGAAGAAACCAAATCAGTAGCTTTAATCGGCAATCGCAATCCCTCTCATTTCCGCACTGTGGACATGGATGGTAAGTTCGATACTTCATCTTCTGCTTCTAAAACTGTGGACGATCTTTGGAGGGAGTTGAAGGAGGAGGCTGTTGGAGAGATGATATTGGAGGGTTTTCTTCAAGCCAAACCACAGGATCAGGATGTGAGGATTTTGAATCCGTTTAGTTGTTTAAAGGATTTCGATAGGGTTTATGTTGAAGAAGAGACTGTTGGGTTTGGGAATGGAGTTGACATTAGTGGGAGAGGGAAGAGAAGGCGCGCAGCTATGGAACCAATGGATGAAGCTGCACTGCAAAGACAACGGAGGATGATTAAGAACAGGGAGTCTGCTGCTAGGTCCAGAGAAAGGAAACAAGCACATCAAGTTGAGTTAGAGTTAATAGCTTCGAGACTTGAGGAAGAGAACGAGCGATTATTGAAAGAGAAGGCCGAGAGATCTAAGGAACGACTAAAGCAGTTGATGGAAAAAGTAATTCCAGTTGTGGAGAAACAAAGACTGCCACGTGTCATATGCTGGGGAGAAGCGAAAGAGCATTTTGAACTAAAGATCAACCCAACAAGAGATGATGATCCTTCCTCGACCTTTGAACTTCAGTTGGCCAAAGGCACTGCCACTCCTTTTTTCTGCTCTAATGAAACCAATTCCATGTTCATTCTCACTGCCAAACTCACAGGTTTTGCAGCAGATGACATTGTGATAACTATTAATGGAAGCGGTACTCGGATTGAGATTGGCTGGGGAAAACTTGTTCGGAAAGTGGAGATCACGGGAAGGACGTACAAGAAAGAAACAGAGACAAGGAGGTTCAAGAAGATTTTTCGAATTCCGGATGGTGTGGTTTTGGACAAAATCAAGGCGACGTATAATGACAAAGAATCGGTTTTGAAGATTTCGATGCCGAAATTGGTGGATGGAATGCTTGGGGTAGGAATTGAAGAAGTGAAGGAACAGGAAGCTGGTGAAGCCACATTCGGATCTCAGCATTATCAAGAGGAGCTGTTTGAGACTCTGGAAACTGGCAGAAAGACCAATTTGGTTGATGATAATCATGAAAAGGAGGAAGACGATGCTGCTAATGGTGAAGTTGAAGAAGAAACTGTTGGGCCCGAAGCATTTCATGAGAGAGAATATGTAGCAGAAATGCCGCCAGAAGACATCAAGAAGTTGAAGGGCAATGAGATGGATCAAGATATTGATGGAGAATCCAATGATGACTACTCTGAAAGGAAACAGACAGGTTAG 1419 43.9 MAPLNSKNSQLSPPPPPPSSSSSSSSLSSFSSHTKSGSISNEETKSVALIGNRNPSHFRTVDMDGKFDTSSSASKTVDDLWRELKEEAVGEMILEGFLQAKPQDQDVRILNPFSCLKDFDRVYVEEETVGFGNGVDISGRGKRRRAAMEPMDEAALQRQRRMIKNRESAARSRERKQAHQVELELIASRLEEENERLLKEKAERSKERLKQLMEKVIPVVEKQRLPRVICWGEAKEHFELKINPTRDDDPSSTFELQLAKGTATPFFCSNETNSMFILTAKLTGFAADDIVITINGSGTRIEIGWGKLVRKVEITGRTYKKETETRRFKKIFRIPDGVVLDKIKATYNDKESVLKISMPKLVDGMLGVGIEEVKEQEAGEATFGSQHYQEELFETLETGRKTNLVDDNHEKEEDDAANGEVEEETVGPEAFHEREYVAEMPPEDIKKLKGNEMDQDIDGESNDDYSERKQTG 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9868043 9874040 + CrPI670011_09g009620.1 Cre09g0962 507630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0962 472 Gene3D - 156 215 - -
Cre09g0962 472 SMART brlzneu 153 215 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0962 472 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 155 207 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0962 472 SUPERFAMILY Leucine zipper domain 157 208 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0962 472 CDD ACD_sHsps-like 270 360 - -
Cre09g0962 472 CDD bZIP_plant_BZIP46 157 203 - -
Cre09g0962 472 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 39 210 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Cre09g0962 472 Pfam bZIP transcription factor 153 215 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0962 472 Gene3D - 230 365 IPR008978 -
Cre09g0962 472 MobiDBLite consensus disorder prediction 1 51 - -
Cre09g0962 472 MobiDBLite consensus disorder prediction 425 472 - -
Cre09g0962 472 MobiDBLite consensus disorder prediction 22 51 - -
Cre09g0962 472 MobiDBLite consensus disorder prediction 402 472 - -
Cre09g0962 472 Pfam Hsp20/alpha crystallin family 271 361 IPR002068 -
Cre09g0962 472 Coils Coil 176 215 - -
Cre09g0962 472 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 160 175 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0962 472 SUPERFAMILY HSP20-like chaperones 254 361 IPR008978 -
Cre09g0962 472 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 257 376 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0962 K14432 - - cit:102616186 166.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0653 Cre-Chr8:19476511 Cre09g0962 Cre-Chr9:9868043 1.40E-34 dispersed
Cre09g0962 Cre-Chr9:9868043 Cre09g1394 Cre-Chr9:24376868 2.70E-13 dispersed
Cre09g0962 Cre-Chr9:9868043 Cre10g2018 Cre-Chr10:34824571 2.40E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1500 Cone7ag1449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g00948 Cam09g0999 Cec09g1000 Cco09g1012 . . Cre09g0962 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008746 0 0 0 0 0 1 2 1 1 2 2 1 2 1 0 2 1 2 0 1 2 0 2 1 1 2 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54345 PF00011 HSP20 1.60E-07 CL0190 Cre TF