Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0990 ATGGATCCTGAAGATAGTTTGTGTAGCTCTGAAGTTTGGACAAAATCTTCTTCTTTTCCTAATAATAATATTCTGCAACCAGCACAAAAATGGGCAGCTGCTTCCATTTTAGACTATGCTATGGAACAACCTTTCCAAGAATTTGAAGAACGGACAGAATCGAAGGCCTCCCTAAGCTGTAACCCGAATCAACAAATTGAAATCCTTGATAAAGATAGTAATCAGATGAATGCAGCACTTCTAGCCGGTAAAATTCAAGATTGGGATCCGAGGGCAATGCTAAATAATCTTTCTTTCCTTGAGCAGAAGATTCATCAGCTTCAGGAACTTGTGCATTTGATGGTTGGTCGGAGGAGCCAAGTCTTCGGGAGGCCAGATGAACTTGTAGTTCAGCAACAGCAGCTGATAACTGCAGATCTAACTTCAATTATTGTTCAGTTAATCTCGACGGCTGGTAGTCTGCTTCCATCTGTAAAGCATAACTTGTCTGCTGCTGTTCCTGCAGTCGGGCAGCTGGAGCAGCTCGACAAAGTTCTTTTCGCGTCTGGACCCGGGACTGATAATGGTGGTGTTCAGTCACAACATGGTGATGGAACCAAACTCCCCGAGCTTCCAACCCAAGTGGACGGAAGTAGCAAGTGTGGGAAAGAACAGAACATGACCTTTGAAGAACACGAATCAAAGGATGAAGAAGACGCAGATGAAAATGAGAACCTTCCACCTGGTTCGTATGAAATATTGCAGCTAGAAAAAGAAGAGATCCTAGCACCTCACACCCACTTCTGTGCAATATGTGGAAAAGGGTTCAAGAGAGATGCAAATCTACGAATGCACATGAGGGGTCATGGTGACGAGTATAAAACTGCAGCCGCCCTTGCAAAGCCGAACAAAGAAATGGGTTCCGAGACCATGCTAATTAAGAGGTATTCCTGCCCCTTCACCGGCTGCAAGCGTAACAAGGATCATAAGAAGTTTCAGCCTTTGAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGCGACAAAAGCTTCACTTGCAGCAAATGCAACTCTAAGAAATTCTCAGTAATTGCTGATCTCAAAACACATGAGAAGCATTGTGGGAAAGATAAATGGCTTTGTTCTTGTGGGACTACTTTCTCTAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTCGACGAGTCGAAGGGAGCAGTCATGTCCTGTGATCGAGGAGAACGCTATGAAACAACGAATAAGCTTGGGAGCATAAATTTCAGTTTCGGGTCGGTTGCTTCAGGAGGAAGCTCAGTTGAAACCATAGGAGATGCAAAAGGTGGTGTTGATGATCCTCTTAGTTATTTCTCACCTCTGAACTTCGATTCATGTAATTTTGGTGGCTTTCATGAGTTTCCTCGACCGCCATTCGAAAACACAGACAATGCATTTTCGTTCCTTATCCCAGCATCTAGCAATTACACCCAAAAATCTGGTGCAGAATCAAGCTCTTGA 1530 43.79 MDPEDSLCSSEVWTKSSSFPNNNILQPAQKWAAASILDYAMEQPFQEFEERTESKASLSCNPNQQIEILDKDSNQMNAALLAGKIQDWDPRAMLNNLSFLEQKIHQLQELVHLMVGRRSQVFGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNLSAAVPAVGQLEQLDKVLFASGPGTDNGGVQSQHGDGTKLPELPTQVDGSSKCGKEQNMTFEEHESKDEEDADENENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKEMGSETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGAVMSCDRGERYETTNKLGSINFSFGSVASGGSSVETIGDAKGGVDDPLSYFSPLNFDSCNFGGFHEFPRPPFENTDNAFSFLIPASSNYTQKSGAESSS 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10177712 10179241 - CrPI670011_09g009900.1 Cre09g0990 507658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0990 509 SMART c2h2final6 309 342 IPR013087 -
Cre09g0990 509 SMART c2h2final6 260 282 IPR013087 -
Cre09g0990 509 SMART c2h2final6 347 369 IPR013087 -
Cre09g0990 509 SUPERFAMILY beta-beta-alpha zinc fingers 258 286 IPR036236 -
Cre09g0990 509 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 63 492 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Cre09g0990 509 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Cre09g0990 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
Cre09g0990 509 Gene3D Classic Zinc Finger 244 315 - -
Cre09g0990 509 MobiDBLite consensus disorder prediction 183 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1212 Cre-Chr1:24571319 Cre09g0990 Cre-Chr9:10177712 1.30E-60 dispersed
Cre04g1490 Cre-Chr4:33651945 Cre09g0990 Cre-Chr9:10177712 1.30E-63 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54346 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0990 - - - 0.0