Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1003 ATGATCCTCAACTTGGGAATGAAGCTAATGAGGCCTAACAAAATGGCTAATGAGGCATACCATTCAGTTGAGCTTAGCAAATGGGTAATGAGGCATGCCATTCAGTTGAGCTTAGCAAATGGTTATCCTAACGCCAGGCCTATTGGATCAGGAAAGCGTGAAAGATCTACCGCTCACCTGACTCTTGCCGCCGACAGAGCTAGTTCGTTCGTCATGGCGGACGTGATGCTGATGAAGGAGATTGAGGATACGGCTGGTCGGCTTGGGATAGATCTCTCCCAAGTTGATTTTGACGCCATTCGTCTACCTCCTGGCGACGATTTCGGAATTATTAGTGATGATGAAGAAGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTACGTAAAATTTTTGGGCAGATTGGAGTAATTAAGGATGATGGTTTGTGGATGCCTGTTGACCCTACTACACAGAAAACTTTAGGTTACTGCTTTATCGAGTATGGCACTCCACAGGAGGCTGAGCTTGCTAAAGAGAAAACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACTGTCAACATGTTTGAGGACTTCGACAGATTCATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAGCCCATATACTCCTGGGGAAAATCTTCAAAAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATTCGTTCTGGTTCTGACACTGAGGTCTTCTGGAATGATGCTAGGCATTTGAAGCCTGAGCCTGTCTACAAGCGCACATTCTGGACTGAGAGTTTTGTGCAGTGGTCCTCATTGGGGACTTACCTAGCGACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAGAAATATCTGGTGACTTACAGCAGTCATGAGCCCAGCAATCCCCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTAAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCTATTGGAGGAACAGGTGGTGTTGCCGGTGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGATGATAAATACTTTGCCAGAATTGGGAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTATTGACAAAAAATCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACAGATCCCATTCTTGCTCTGTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTTCAAATCCCCAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACAAAGACGAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATTCCCATTGAAGTGTTGGAGCTTGAGAACAAGAACGACAAGATAATTGCCTTTGCCTGGGAGCCAAAGGGGCATAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCTATGCGAAGCACACACAACAGTGGCCGAGTGTCAAAGCTTACAACTCTCAAAGGCAAGCAAGCCAATGCTCTTTTCTGGTCGCCTGCTGGACGCTTTATTATTCTTGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACAATGGCAACTGCGGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTATGTTGCTACTGCTGTAACTTCAGTTCACGAGATGGAGAATGGTTTCAACATATGGTCCTTTAATGGAAAACTCCTCTATCGAATCTTGAAGGACCATTTCTTTCAGTTTGCATGGCGGCCGAGGCCACCATCCTTCTTGAGTCCCGAGCAAGAGGAAGAGATAGCAAAGAATTTGAAGAAGTACAGTAAGAAGTACGAGGCTGAAGATCAGGATGTATCTATGCTACTGAGCGAGCAAGATCGCGAGAAACGGAGAATGTTGAAGGATGAGTGGGACAAGTGGGTGAATGAATGGAAGAGATTGCACGAAGAAGAGAAGTTGTTGCGGCAGAAGCTGCGGGATGGCGAAGCCAGCGACGAAGAAGAGGAATACGAAGCCAAAGAGGTCGAAGTCGAAGAGATTCTGGATGTGTCGGAGGAAGTTTTGTCCTTTGATTTTGGGCAGGAATGA 2373 45.05 MILNLGMKLMRPNKMANEAYHSVELSKWVMRHAIQLSLANGYPNARPIGSGKRERSTAHLTLAADRASSFVMADVMLMKEIEDTAGRLGIDLSQVDFDAIRLPPGDDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEISPYTPGENLQKWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRTFWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEQEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKDEWDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFDFGQE 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10264384 10273982 - CrPI670011_09g010030.1 Cre09g1003 507671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1003 790 Pfam RNA recognition motif 153 207 IPR000504 GO:0003723(InterPro)
Cre09g1003 790 Coils Coil 758 778 - -
Cre09g1003 790 FunFam Eukaryotic translation initiation factor 3 subunit B 482 697 - -
Cre09g1003 790 FunFam Eukaryotic translation initiation factor 3 subunit B 252 453 - -
Cre09g1003 790 FunFam Eukaryotic translation initiation factor 3 subunit B 126 225 - -
Cre09g1003 790 SMART rrm1_1 132 214 IPR000504 GO:0003723(InterPro)
Cre09g1003 790 SUPERFAMILY RNA-binding domain, RBD 129 212 IPR035979 GO:0003676(InterPro)
Cre09g1003 790 PIRSF Transl_init_eIF3b 78 784 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cre09g1003 790 CDD RRM_eIF3B 130 214 IPR034363 -
Cre09g1003 790 Gene3D - 126 225 IPR012677 -
Cre09g1003 790 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 218 IPR000504 GO:0003723(InterPro)
Cre09g1003 790 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 119 784 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cre09g1003 790 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 107 779 IPR011400 GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(InterPro)|GO:0006413(PANTHER)|GO:0031369(InterPro)
Cre09g1003 790 SUPERFAMILY DPP6 N-terminal domain-like 288 671 - -
Cre09g1003 790 Gene3D - 251 513 IPR015943 GO:0005515(InterPro)
Cre09g1003 790 Gene3D - 518 732 IPR011042 -
Cre09g1003 790 Pfam Eukaryotic translation initiation factor eIF2A 477 677 IPR013979 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0998 Cre-Chr9:10236044 Cre09g1003 Cre-Chr9:10264384 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1003 K03253 - csv:101213144 1435.62