Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g1003 | ATGATCCTCAACTTGGGAATGAAGCTAATGAGGCCTAACAAAATGGCTAATGAGGCATACCATTCAGTTGAGCTTAGCAAATGGGTAATGAGGCATGCCATTCAGTTGAGCTTAGCAAATGGTTATCCTAACGCCAGGCCTATTGGATCAGGAAAGCGTGAAAGATCTACCGCTCACCTGACTCTTGCCGCCGACAGAGCTAGTTCGTTCGTCATGGCGGACGTGATGCTGATGAAGGAGATTGAGGATACGGCTGGTCGGCTTGGGATAGATCTCTCCCAAGTTGATTTTGACGCCATTCGTCTACCTCCTGGCGACGATTTCGGAATTATTAGTGATGATGAAGAAGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTACGTAAAATTTTTGGGCAGATTGGAGTAATTAAGGATGATGGTTTGTGGATGCCTGTTGACCCTACTACACAGAAAACTTTAGGTTACTGCTTTATCGAGTATGGCACTCCACAGGAGGCTGAGCTTGCTAAAGAGAAAACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACTGTCAACATGTTTGAGGACTTCGACAGATTCATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAGCCCATATACTCCTGGGGAAAATCTTCAAAAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATTCGTTCTGGTTCTGACACTGAGGTCTTCTGGAATGATGCTAGGCATTTGAAGCCTGAGCCTGTCTACAAGCGCACATTCTGGACTGAGAGTTTTGTGCAGTGGTCCTCATTGGGGACTTACCTAGCGACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAGAAATATCTGGTGACTTACAGCAGTCATGAGCCCAGCAATCCCCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTAAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCTATTGGAGGAACAGGTGGTGTTGCCGGTGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGATGATAAATACTTTGCCAGAATTGGGAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTATTGACAAAAAATCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACAGATCCCATTCTTGCTCTGTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTTCAAATCCCCAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACAAAGACGAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATTCCCATTGAAGTGTTGGAGCTTGAGAACAAGAACGACAAGATAATTGCCTTTGCCTGGGAGCCAAAGGGGCATAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCTATGCGAAGCACACACAACAGTGGCCGAGTGTCAAAGCTTACAACTCTCAAAGGCAAGCAAGCCAATGCTCTTTTCTGGTCGCCTGCTGGACGCTTTATTATTCTTGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACAATGGCAACTGCGGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTATGTTGCTACTGCTGTAACTTCAGTTCACGAGATGGAGAATGGTTTCAACATATGGTCCTTTAATGGAAAACTCCTCTATCGAATCTTGAAGGACCATTTCTTTCAGTTTGCATGGCGGCCGAGGCCACCATCCTTCTTGAGTCCCGAGCAAGAGGAAGAGATAGCAAAGAATTTGAAGAAGTACAGTAAGAAGTACGAGGCTGAAGATCAGGATGTATCTATGCTACTGAGCGAGCAAGATCGCGAGAAACGGAGAATGTTGAAGGATGAGTGGGACAAGTGGGTGAATGAATGGAAGAGATTGCACGAAGAAGAGAAGTTGTTGCGGCAGAAGCTGCGGGATGGCGAAGCCAGCGACGAAGAAGAGGAATACGAAGCCAAAGAGGTCGAAGTCGAAGAGATTCTGGATGTGTCGGAGGAAGTTTTGTCCTTTGATTTTGGGCAGGAATGA | 2373 | 45.05 | MILNLGMKLMRPNKMANEAYHSVELSKWVMRHAIQLSLANGYPNARPIGSGKRERSTAHLTLAADRASSFVMADVMLMKEIEDTAGRLGIDLSQVDFDAIRLPPGDDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEISPYTPGENLQKWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRTFWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEQEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKDEWDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFDFGQE | 790 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 10264384 | 10273982 | - | CrPI670011_09g010030.1 | Cre09g1003 | 507671 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g1003 | 790 | Pfam | RNA recognition motif | 153 | 207 | IPR000504 | GO:0003723(InterPro) | |
Cre09g1003 | 790 | Coils | Coil | 758 | 778 | - | - | |
Cre09g1003 | 790 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 482 | 697 | - | - | |
Cre09g1003 | 790 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 252 | 453 | - | - | |
Cre09g1003 | 790 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 126 | 225 | - | - | |
Cre09g1003 | 790 | SMART | rrm1_1 | 132 | 214 | IPR000504 | GO:0003723(InterPro) | |
Cre09g1003 | 790 | SUPERFAMILY | RNA-binding domain, RBD | 129 | 212 | IPR035979 | GO:0003676(InterPro) | |
Cre09g1003 | 790 | PIRSF | Transl_init_eIF3b | 78 | 784 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Cre09g1003 | 790 | CDD | RRM_eIF3B | 130 | 214 | IPR034363 | - | |
Cre09g1003 | 790 | Gene3D | - | 126 | 225 | IPR012677 | - | |
Cre09g1003 | 790 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 131 | 218 | IPR000504 | GO:0003723(InterPro) | |
Cre09g1003 | 790 | Hamap | Eukaryotic translation initiation factor 3 subunit B [EIF3B]. | 119 | 784 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Cre09g1003 | 790 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED | 107 | 779 | IPR011400 | GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(InterPro)|GO:0006413(PANTHER)|GO:0031369(InterPro) | |
Cre09g1003 | 790 | SUPERFAMILY | DPP6 N-terminal domain-like | 288 | 671 | - | - | |
Cre09g1003 | 790 | Gene3D | - | 251 | 513 | IPR015943 | GO:0005515(InterPro) | |
Cre09g1003 | 790 | Gene3D | - | 518 | 732 | IPR011042 | - | |
Cre09g1003 | 790 | Pfam | Eukaryotic translation initiation factor eIF2A | 477 | 677 | IPR013979 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre09g0998 | Cre-Chr9:10236044 | Cre09g1003 | Cre-Chr9:10264384 | 0.00E+00 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g1003 | K03253 | - | csv:101213144 | 1435.62 |