Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1021 ATGAGTTGGTTTCAATGTTGCATGTCAGAGGAGAGAGTTAATAGAAATGCTTTGAAAAAGAGCATTAAGGAATACCATGACACAAAAACTTTAGCCTCATTTGCCAATCTTTCCTTCAAGTCTGGTAACAATAGAGGAAGGTACACAAATAAGGAGTTAAAGAGGTTACGAAAAGGGAACATTTTAGCTCAAACTTTTACATTCCGTGAGCTATGTGTTGCAACAAATAACTTCAACAACGAAAATCTATTGGGGGAAGGTGGTTTTGGAAGGGTTTACAAAGCCCTCATTGAAAGCACAAAACAAGTAACGGCCGTGAAGCGACTTGATCCAAATGGATTTCAAGGGAACAGAGAATTTCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCCAATCTTGTCAATTTGGTTGGGTATTGTGCTGATGCAAATCAAAGGATTTTGGTTTATGAGTATATGGCTAATGGTTCCTTGGAGGATCATCTTCTTGATACAGCTTCAAATAAGCCACCTCTAGATTGGAACACAAGGATGAAAATCGTCAAAGGAATCGCAAGAGGACTCGAATACTTACACGAAACCGTCAGTCCTCCCGTGATATACCGCGACTTTAAAGCTTCAAACATATTGTTGGATGAAGAATTCAATGCAAAGCTCTCTGATTTTGGTCTTGCAAAGATAGGTCCCATTGGAGATCAATCTCATGTTTCCACAAGAGTGATGGGAACTTATGGTTATTGTGCTCCTGAATATGCACTTACAGGACAATTGTCCACCAAATCCGATGTCTACGGTTTCGGCGTCGTCTTCTTGGAGATAATCACAGGAAGACGAGTTATTGACAACACAAAACCAACTGCACAAAAAAATTTAATTTCTTGGGCACAACCACTTTTCAAAGACAGAAGGAAATTCACACTAATGGCAGATCCAAAGCTAGAAGGAAATTACCCAGTGAAGGCTCTTTATCAAGCTCTAGCAGTGGTAGCCATGTGTTTGCAAGAGGAAGCAAATACTCGGCCATTGATTAGCGACGTGGTTACAGCGCTTCAATATTTAGCTGTGAGTGACAAGAATGTCGATGAAGACGTAGATGACGAATCAGATTCGGAGTCGGTATCTGAATCGGAATTAAGTTGTTCATATTCATGTTCAACTTCTCCTGATAGAAGAAGTGATATTGGAGGTAAAAATGTTGGTGTTGAAGGTGATGGGAGAGGAGAGTGGGCACGAATCACCACCCGTGGATTCCCATTCATTCTACCCAACTCCCATGTTCTTCAGATTCAATTCCCTTTCTTAATCGCCATGAAAAGACGGACTTTGCTCAAGGTCATCGTTCTCGGTGATAGTGGGGTTGGTAAGACGTCGTTGATGAACCAGTATCCTTCTGAATATTGGTTGTTGACAATGATATTGATCTGTGTTTTGAGCATATACGTGCATAAGAAGTTCAGCCAGCAATATAAAGCTACAATTGGTGCAGATTTTGTCACCAAGGAACTTCAAATTGACGATAGGCTTGTCACACTTCAAATATGGGATACAGCCGGACAAGAAAGATTTCAAAGTCTTGGAGTTGCATTCTATAGAGGGGCAGATTGCTGTGTTCTAGTCTATGATGTTAACGTGATGAAGTCATTTGACACACTTGATACTTGGCACGATGAGTTTCTTAGACAGTTCTACAGTAATGGTTTCAGAGGAAGGGAAGGGGCTTTTTGGGTTGTACCCTGCATCCTCATTTTTTCCTTCTCATTCAAAAAGTGTTGTTTTATTTGCGTTGCTCTGGCAAACCCACCTGACCCTAGGACGTTTCCGTTTATTTTGCTTGGAAATAAGATTGACATTGATGGTGGGAATAGTCGAGTGGTCTCTGAGAAGAAAGCTAGGGAATGGTGTGCTTCAAAAGAAAATATTCCCTACTTCGAGACATCAGCTAAAGAGGACTACAACGTCGATGCTGCTTTTTTATGCATTGCCAAGACTGCATTAGCCAATGAACATGAGCAGGATATATATTTCCAAGGAATCCCCGAAACCGTCGTGGAGACTGAGCAAAGAGGTGGCTGCGCATGCTGA 2088 41.28 MSWFQCCMSEERVNRNALKKSIKEYHDTKTLASFANLSFKSGNNRGRYTNKELKRLRKGNILAQTFTFRELCVATNNFNNENLLGEGGFGRVYKALIESTKQVTAVKRLDPNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADANQRILVYEYMANGSLEDHLLDTASNKPPLDWNTRMKIVKGIARGLEYLHETVSPPVIYRDFKASNILLDEEFNAKLSDFGLAKIGPIGDQSHVSTRVMGTYGYCAPEYALTGQLSTKSDVYGFGVVFLEIITGRRVIDNTKPTAQKNLISWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVVAMCLQEEANTRPLISDVVTALQYLAVSDKNVDEDVDDESDSESVSESELSCSYSCSTSPDRRSDIGGKNVGVEGDGRGEWARITTRGFPFILPNSHVLQIQFPFLIAMKRRTLLKVIVLGDSGVGKTSLMNQYPSEYWLLTMILICVLSIYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLDTWHDEFLRQFYSNGFRGREGAFWVVPCILIFSFSFKKCCFICVALANPPDPRTFPFILLGNKIDIDGGNSRVVSEKKAREWCASKENIPYFETSAKEDYNVDAAFLCIAKTALANEHEQDIYFQGIPETVVETEQRGGCAC 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10465024 10478039 - CrPI670011_09g010210.1 Cre09g1021 507689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1021 695 ProSiteProfiles small GTPase Rab1 family profile. 440 695 - -
Cre09g1021 695 MobiDBLite consensus disorder prediction 376 394 - -
Cre09g1021 695 FunFam Serine/threonine-protein kinase PBS1 155 371 - -
Cre09g1021 695 Gene3D Phosphorylase Kinase; domain 1 40 154 - -
Cre09g1021 695 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g1021 695 SMART ras_sub_4 442 669 - -
Cre09g1021 695 SUPERFAMILY Protein kinase-like (PK-like) 63 350 IPR011009 -
Cre09g1021 695 Pfam Ras family 604 666 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre09g1021 695 Pfam Ras family 477 564 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre09g1021 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g1021 695 ProSiteProfiles small GTPase Rho family profile. 437 671 - -
Cre09g1021 695 Gene3D - 438 679 IPR027417 -
Cre09g1021 695 CDD Rab7 445 672 - -
Cre09g1021 695 ProSiteProfiles small GTPase Ras family profile. 439 695 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre09g1021 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 439 673 IPR027417 -
Cre09g1021 695 FunFam probable serine/threonine-protein kinase RLCKVII 50 154 - -
Cre09g1021 695 SMART rab_sub_5 445 669 - -
Cre09g1021 695 PANTHER OS07G0668900 PROTEIN 37 374 - -
Cre09g1021 695 PRINTS Transforming protein P21 ras signature 445 466 - -
Cre09g1021 695 PRINTS Transforming protein P21 ras signature 504 526 - -
Cre09g1021 695 PRINTS Transforming protein P21 ras signature 644 666 - -
Cre09g1021 695 PRINTS Transforming protein P21 ras signature 486 502 - -
Cre09g1021 695 Gene3D Transferase(Phosphotransferase) domain 1 155 380 - -
Cre09g1021 695 CDD STKc_IRAK 84 353 - -
Cre09g1021 695 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524(InterPro)
Cre09g1021 695 MobiDBLite consensus disorder prediction 363 400 - -
Cre09g1021 695 SMART rho_sub_3 447 669 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre09g1021 695 Pfam Protein kinase domain 79 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0439 Cre-Chr2:1630947 Cre09g1021 Cre-Chr9:10465024 3.90E-80 dispersed
Cre09g0190 Cre-Chr9:2093863 Cre09g1021 Cre-Chr9:10465024 1.90E-80 dispersed
Cre09g1021 Cre-Chr9:10465024 Cre10g0763 Cre-Chr10:7436416 4.10E-175 dispersed
Cre11g2175 Cre-Chr11:33468511 Cre09g1021 Cre-Chr9:10465024 6.60E-23 dispersed
Cre11g2237 Cre-Chr11:34151206 Cre09g1021 Cre-Chr9:10465024 2.90E-66 dispersed
Cre09g1021 Cre-Chr9:10465024 Cre05g0718 Cre-Chr5:6341480 2.30E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64404 PF00069 Pkinase 2.80E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1021 - - - 0.0