Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1038 ATGAAGTTGAAGCTCGACAGCAAGAGCAAGAGCTTGCTGCAGGCAAGCAAGCTAAAGAAAAAGCATGGTGAAAAGAAAAGCCACGTCAATGAAAGCAGCAAGAGCCAAGCGGAAAACCAGAACAGTACCGAACTACATTTAGAACAAGAAGCTTTAACCTTAGATGAGGCTCCATTACAACAACTTTTGGATTCTGCTCCACCCTTGGATTATAGCGAGGATCATGTCAGCGCGGGCGACAACCATGGTAATTTGGAGAATGATCAGGACCAAGAAAACGAGAATGACAGCCCCGTACCTGATCATGTAGATGAGGAAAGCGATTCATCTGAGGATGAGGTAGCTCCTAGGAACACTATTGGAGATGTTCCCTTGGAATGGTATAGAGACGAGAAGCATATTGGATATGACATATCGGGAAAGAAAATATTGAAGAAAGAAAGAGAAGACAAATTACAATCATTTTTAGCAAGTGCTGATGACTCAAAAAGTTGGCGCAAGGTATATGACGAATATAATGATGAGGTAATAGAGTTATCGAAGGAAGAAGTCAGGCAACTGCGGAGACTGCTCAAAGGAAAGGCTCCACATGCAGACTTTGATCCATATCCGTCTTATGTTGATTGGTTTAAGTGGGATGATGCTAAGCACCCACTGTCAAATGCACCTGAACCAAAGAGGCGTTTTGTTCGGTCAAAATGGGAAGCCAAGAAGGTGGTTCAATTAGTTCGGGCAATTCGAAATGGACATATTAATTTTGACAAGCCGAAAGAAGAGCAACATTTCTACCATTTGTGGGGTGATGATTCTAGCTCCACAGAGAAGACCACACATTTGTCTTACATTCCTGCACCAAAACCAAAGTTGCCAGGTCATGATGAATCATATAATCCTTCATTGGAATATATCCCTACTCAAGAAGAAATAAACTCATATCAGTTAATGTATGAAGAAGATCGACCAAAGTTTATTCCTAGGAGGTTTACATCCATGAGAAGTGTACCTGCCTATGACAATGCTCTTAAGGATGCATTTGAACGTTGTTTGGATCTGTACTTGTGCCCTCGTGTCCGGAAGAAACGTATTAATATTGATCCTGAATCCTTGAAGCCTAAGCTGCCAAACCGGAAAGATCTTAGACCTTATCCGACTACATGCTATCTTGAATATAGAGGTCATAAGGATGCTGTAATGTCCATTTCAACTGAAGCCAACGGCCAATGGATTGCTTCAGGTTCATTGGATGGAACTGTTCGGATATGGGAAGTTGAAACAGGTAGATGTCTCAAAGTATGGGAGCTTGGGGAAGCTGTGAAGTATGTAGCTTGGAATCCTTTGCCTGAGCTTCCGATATTGGCTGCTGCTGTGGGTGTTGATGTATTGCTTTTAAACACTGGTTTTGGAGACGGGGAGGTTCAAGCAAAAATTAAGGAACTTCTCCATGTTGACACACTTCCTGGAACAGAAAATTCTGATAAAACGCCAGTTGCAACCTGGCTTCAAGATGACAAGATCGGGGGGATTAGATTGAGGCATTTTAAGACTGTAACTGCAGTTGAGTGGCATCGTAAAGGAGATTACCTTTCAACAGTTATGCCAGCTGATATCCTATTTAATTTTCTCTCTAGAAAGCTAACACAAAAAATTCCGTTCAAGTTGCACGGGCTTCCTGTTTCATCAGTTTTTCATCCCACTCAATCCATCCTCTTTGTATCGACAAAGAAGGAGGTCCGTGTTTATAATCTATTGAAGCAAAAACTCATGAAGAAACTGAAAACTGGACTCCGGGAAGTTTCTTCTATTGCTGTGCATCCAGCTGGTGATAATGTTATTGTGGGAAGCAGAGAAGGAAAATTATGTTGGTTTGATATGGACCTTTCATCACAGCCTTACAAAATTCTCAGCTGTCATCCAAAAGATATCACAAATGTTGCCTTCCATCGATCACGCCCGTTGTTCGCATCCTGCTCAGATGATTGCACTGCATATGTTTTCCATGGGATGGTTTACTTGGATCTGACACAGAATCCCCTTATTACACCGTTGGAAATACTAAGAGGACACAAAAACGTTAATGGAAGAGGAGTAATGGATTGCAAATTTCACCCGATGCAGCCATGGTTATTTACTGCTGGTGCAGATTCACTTGGTTCTGTGGAACTCGTTGAGGTCACTACTATTGAAATCTCTTGGTTGGGAATTGTCGATGTGCTAATGATTTCCAGCTTCGTGGTTCCGTCCTTGGTTTCACTTAGGCCAATAATAGGTGTAACTTTGCTACACATGTATTAG 2292 41.88 MKLKLDSKSKSLLQASKLKKKHGEKKSHVNESSKSQAENQNSTELHLEQEALTLDEAPLQQLLDSAPPLDYSEDHVSAGDNHGNLENDQDQENENDSPVPDHVDEESDSSEDEVAPRNTIGDVPLEWYRDEKHIGYDISGKKILKKEREDKLQSFLASADDSKSWRKVYDEYNDEVIELSKEEVRQLRRLLKGKAPHADFDPYPSYVDWFKWDDAKHPLSNAPEPKRRFVRSKWEAKKVVQLVRAIRNGHINFDKPKEEQHFYHLWGDDSSSTEKTTHLSYIPAPKPKLPGHDESYNPSLEYIPTQEEINSYQLMYEEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPNRKDLRPYPTTCYLEYRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWELGEAVKYVAWNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKIKELLHVDTLPGTENSDKTPVATWLQDDKIGGIRLRHFKTVTAVEWHRKGDYLSTVMPADILFNFLSRKLTQKIPFKLHGLPVSSVFHPTQSILFVSTKKEVRVYNLLKQKLMKKLKTGLREVSSIAVHPAGDNVIVGSREGKLCWFDMDLSSQPYKILSCHPKDITNVAFHRSRPLFASCSDDCTAYVFHGMVYLDLTQNPLITPLEILRGHKNVNGRGVMDCKFHPMQPWLFTAGADSLGSVELVEVTTIEISWLGIVDVLMISSFVVPSLVSLRPIIGVTLLHMY 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10638140 10645572 + CrPI670011_09g010380.1 Cre09g1038 507706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1038 763 MobiDBLite consensus disorder prediction 33 48 - -
Cre09g1038 763 PANTHER RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN 21 716 IPR028598 GO:0000463(PANTHER)|GO:0030687(PANTHER)|GO:0042254(InterPro)|GO:0043021(PANTHER)|GO:0070545(PANTHER)
Cre09g1038 763 Pfam WD domain, G-beta repeat 681 715 IPR001680 GO:0005515(InterPro)
Cre09g1038 763 Pfam WD domain, G-beta repeat 385 421 IPR001680 GO:0005515(InterPro)
Cre09g1038 763 Pfam WD domain, G-beta repeat 629 665 IPR001680 GO:0005515(InterPro)
Cre09g1038 763 Hamap Ribosome biogenesis protein @gn(BOP1) [BOP1]. 1 723 IPR028598 GO:0042254(InterPro)
Cre09g1038 763 MobiDBLite consensus disorder prediction 75 104 - -
Cre09g1038 763 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 427 - -
Cre09g1038 763 FunFam Ribosome biogenesis protein BOP1 homolog 373 720 - -
Cre09g1038 763 SMART WD40_4 678 723 IPR001680 GO:0005515(InterPro)
Cre09g1038 763 SMART WD40_4 584 623 IPR001680 GO:0005515(InterPro)
Cre09g1038 763 SMART WD40_4 544 581 IPR001680 GO:0005515(InterPro)
Cre09g1038 763 SMART WD40_4 627 666 IPR001680 GO:0005515(InterPro)
Cre09g1038 763 SMART WD40_4 383 422 IPR001680 GO:0005515(InterPro)
Cre09g1038 763 SMART BOP1NT_2 128 383 IPR012953 GO:0006364(InterPro)
Cre09g1038 763 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 431 IPR001680 GO:0005515(InterPro)
Cre09g1038 763 MobiDBLite consensus disorder prediction 1 123 - -
Cre09g1038 763 Pfam BOP1NT (NUC169) domain 128 383 IPR012953 GO:0006364(InterPro)
Cre09g1038 763 SUPERFAMILY WD40 repeat-like 347 715 IPR036322 GO:0005515(InterPro)
Cre09g1038 763 ProSitePatterns Trp-Asp (WD) repeats signature. 409 423 IPR019775 -
Cre09g1038 763 Gene3D - 373 719 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1038 K14824 - - csv:101220511 1265.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0133 Cre-Chr8:2842251 Cre09g1038 Cre-Chr9:10638140 0.00E+00 dispersed
Cre09g1038 Cre-Chr9:10638140 Cre10g1837 Cre-Chr10:32913747 5.20E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g529 . . . . . Bpe08g01118 . . . . Cma01g01123 . Car01g00996 . Sed04g3221 . Cpe02g00778 Bhi09g01657 Tan01g4565 Cmetu01g0146 . Hepe01g1264 Mch11g1198 . . . . . . . . . Cone9ag0064 . . Lsi02g01897 Csa07g01102 . . . . . . . . Bma07g01289 . . Cmo01g01174 . . . . . . . . . . . . . . Cla09g01016 Cam09g1073 Cec09g1073 Cco09g1092 . . Cre09g1038 . . . Cme01g01020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003594 1 10 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 1 2 1 1 2 1 1 2 0 1 1 0 43