Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1042 ATGGACTGGACCAGAGGCCCTGCCGTCGGCCGCGGCTCCTCCGCCACCGTCTATTTGGCCACAGCCGCCTCCTCCGGCCACCAATTCGCCGTCAAATCCACCGACCTCACTTCATCGGCGCTGTTGCAGAAGGAGCACGCTCTTCTTTCCAATTTGAGCTCCCCATATCTAATCAAGTGCTTAGGTTTCGACATTGAAACCGAAGCCTTGAATCCGCCGGTGTTCAATTTGTTCATGGAGTATTTGCCGGAGGGGACACTGTGGGATGCGATACAGAGCAACGGCGGTCGGATGGAGGAATCGACGATCGGAGTATTTTCGCGTCAGATTCTCAAAGGATTGGAGTACCTTCACGCTAATGGATTAGCACATTGCGATATCAAGAGCCGGAATCTGTTATTGAGTGATGAGGGTTTGAAAATCGCCGATCTAGGTTGTGCGAAATTTGTGGATGAAATTTCCGGTAATGGAGTTGGGGCTTTTTCTGGTTCGCCGGCGTTCATGGCACCCGAGGTTGCGAGAGGTGAAGAACAGGGGTTTCCGGCGGATGTTTGGGCTTTTGGATGCACAGTCATTGAAATGGCTACTGGCGATCATCCATGGCCGGAGATGGAGGATCCGGTATCGGCGTTGTATCGGATTGGATTTTCCGGCGAGTTACCGGAGATCCCACGGTGGTTGTCGAAGGGTGCAAGGGATTTTGTCGCCAAGTGTTTGATAAAAGACCCGAAAGAAAGATGGACCGTGAAACGGCTTCTTGAGCATCCGTTTCTTCAGGGATTTGATTCTGAATCGGAGATTGAATGCTCGAGGATGAAAACGATGAATTCTTCTCCGAACTGTGTTTTGGATCAGAGCTTTTGGGATTCAATGGAAGATTTGGAGACTCCATTGAAGGTGACCCATCAAGCTTCTATGGCGGGTTGTCCGGCTGAGAGGATTAGAAGTTTGGCTGGTAATTTGTCTTCTGATTGGGATTTGGAATGGGATGATCGGGATTGGGTTTTGATCAGAAACAATGGCGTCGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCTCAGATATTTTTGCCTCAGTTGAAGGAGAAGAAATTTTGAACTTGGAATTTGAAGAAAATTCTGTATTGTTCTGTTTAGTTGATAATGATTTTAGTGTTGTGAAGAATAGGAATGGAGGATTAGAAATGGAATTTGAGAGTGATTTTATGTTGGAAACTGTGAGATCTGAAGTTGAAAATGCATATGACTCCATTTCAAGTGACAAATTAGTCTCGGACTATTCCCACTCAATCGCTTTCAACCCTTCTAACATTGCACCTGCTTCCAGCATGTTGTCTCCTAACTCCTTCCTCGTAGCTTTGTAG 1365 47.4 MDWTRGPAVGRGSSATVYLATAASSGHQFAVKSTDLTSSALLQKEHALLSNLSSPYLIKCLGFDIETEALNPPVFNLFMEYLPEGTLWDAIQSNGGRMEESTIGVFSRQILKGLEYLHANGLAHCDIKSRNLLLSDEGLKIADLGCAKFVDEISGNGVGAFSGSPAFMAPEVARGEEQGFPADVWAFGCTVIEMATGDHPWPEMEDPVSALYRIGFSGELPEIPRWLSKGARDFVAKCLIKDPKERWTVKRLLEHPFLQGFDSESEIECSRMKTMNSSPNCVLDQSFWDSMEDLETPLKVTHQASMAGCPAERIRSLAGNLSSDWDLEWDDRDWVLIRNNGVGGGSHGNGSVSSDIFASVEGEEILNLEFEENSVLFCLVDNDFSVVKNRNGGLEMEFESDFMLETVRSEVENAYDSISSDKLVSDYSHSIAFNPSNIAPASSMLSPNSFLVAL 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10680609 10682777 - CrPI670011_09g010420.1 Cre09g1042 507710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1042 454 Gene3D Transferase(Phosphotransferase) domain 1 2 310 - -
Cre09g1042 454 SUPERFAMILY Protein kinase-like (PK-like) 3 305 IPR011009 -
Cre09g1042 454 Pfam Protein kinase domain 6 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g1042 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g1042 454 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g1042 454 CDD STKc_MAPKKK 2 258 - -
Cre09g1042 454 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 259 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cre09g1042 454 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Cre09g1042 454 SMART serkin_6 3 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1223 Cre-Chr2:12211283 Cre09g1042 Cre-Chr9:10680609 6.20E-84 dispersed
Cre03g0379 Cre-Chr3:2208967 Cre09g1042 Cre-Chr9:10680609 2.50E-54 dispersed
Cre04g1313 Cre-Chr4:31942065 Cre09g1042 Cre-Chr9:10680609 9.10E-62 dispersed
Cre04g1799 Cre-Chr4:35899402 Cre09g1042 Cre-Chr9:10680609 5.20E-83 dispersed
Cre09g1042 Cre-Chr9:10680609 Cre09g2066 Cre-Chr9:39714244 1.10E-40 dispersed
Cre09g1042 Cre-Chr9:10680609 Cre02g0537 Cre-Chr2:2492494 1.00E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64405 PF00069 Pkinase 1.20E-51 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1042 K20716 - csv:101205426 676.781