Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1057 ATGATGATGATTACACGTGGACATGGGACCCACGGTTTACCTTGTGCAGTTAGGGATTTTCAATCCAATTTGCTCAGAGCCAAATTCCGTCGTTCTGATTTCCGATTCCGATTGATCGACGAACGTTGGTCGCCGGCGGTGGGGGATTTGTATCGTCTTCCATTTGAATTCAATCAATCCCCATACAATTCCACAGCCGCCCGCTTTTCCGAACGGGGCAATTTTCGGGGTGTTTGTTGGTTTGTTCCATGGTATCTGTTGATTTCAGGGTCAATGGCGTATACATTGGAATCGTGGACGAAGGAATACAATGAAGCTTTGAAACTGTCTGAAGATATCAATGGCATGATTTCTGAGAGAAGTTCACTTGCTGCATCTGGACCGGAAGCTCAGCGTCATGGCTCAGCTATACGCAGGAAGATCACAATATTGGGTACCAGACTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAATCGCCGCAGGGACATGATTGCAAATTTGAGATCAAAAGCTAAGCAGATGGCTTCAACTTTGAACATGTCTAACTTTGCTAACCGGGATAGCTTACTTGGTCCAGAAATAAAGCCAGCTGATGTCATGAACAGAACAGAAGGCTTGGACAACCGAGGTCTAGTTGGTTTTCAACGACAAATTATGAGAGAGCAAGATGAAGGCCTTGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATTGCATTAGCCGTCAATGAAGAACTTAACCTTCACACGAGACTTATTGATGATTTGGATGAACATGTCGATGTTACAGATTCCCGATTACGGCGAGTGCAGAAGAGACTGGCAATACTGAACAAGCGGACCAAGGGTGGTTGCACTTGCATGTCAATGATTTTATCAGTTGTTGGGATTGTCGTTCTTATCGCTGTCATATGGCTACTCGTCAAGTATTTGTAA 975 44.21 MMMITRGHGTHGLPCAVRDFQSNLLRAKFRRSDFRFRLIDERWSPAVGDLYRLPFEFNQSPYNSTAARFSERGNFRGVCWFVPWYLLISGSMAYTLESWTKEYNEALKLSEDINGMISERSSLAASGPEAQRHGSAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRSKAKQMASTLNMSNFANRDSLLGPEIKPADVMNRTEGLDNRGLVGFQRQIMREQDEGLEKLEGTIISTKHIALAVNEELNLHTRLIDDLDEHVDVTDSRLRRVQKRLAILNKRTKGGCTCMSMILSVVGIVVLIAVIWLLVKYL 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10890142 10892713 + CrPI670011_09g010570.1 Cre09g1057 507725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1057 324 PANTHER SYNTAXIN 101 310 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cre09g1057 324 CDD SNARE_Qc 231 288 - -
Cre09g1057 324 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 228 290 IPR000727 -
Cre09g1057 324 Pfam SNARE domain 265 315 IPR000727 -
Cre09g1057 324 FunFam syntaxin-51 isoform X2 230 292 - -
Cre09g1057 324 SUPERFAMILY SNARE fusion complex 219 290 - -
Cre09g1057 324 SMART tSNARE_6 223 290 IPR000727 -
Cre09g1057 324 Gene3D - 230 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1057 Cre-Chr9:10890142 Cre10g0700 Cre-Chr10:6707462 2.20E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1057 K08503 - csv:101208669 420.624