Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g1104 | ATGGCTCAGACAAGAATCATGGGTGGCAGTGAGATGAATAAATCCACAAAGGAGGAATCCAAGACAACACCTGCCACTACACAGGAACAGTCTCCAAACACAAGCACTGGCACCGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCAATACCTCCACCTGGATATTTGGCAACAAGCCCCCAGGCACACACATATATGTGGGGGGTACAGCCTATTATGCCCCCTTATGGAACCCCTCCACACCCGTATGTTGCAATGTATCCTCATGGTGGCATATATGCTCATCCGCCTATGCCTCCGGGATCATATCCTTACAGTCCTTTTGCCATAGCTTCTCCAAATGGCATTGCTGAGGCTTCTGGGAATACTCCAGGCAACATGGAAGGGGAAGGTAAGCCATCTGAGCTGAAAGAAAAATTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAGCATGATAACTGGGAAGAACAATGAGCTTGGTAAACCATCAGGAACATCTGCTAACGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGCACAAGTGAAAGAAGTGGTGCTGACTCTGAAAATGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTGGAGGGACTCCTAATGGTTTAATGCATGGTTCTCAGAATGAAGGACATAGTCTTGCGCATCCATTGGTGAACCAAACAATGTCCATGATACCAATTCAAGCTTCTGGAGCCGTTACAGGTCCTGCTACAAATTTGAATATAGGAATGGATTATTGGGGTACCCCAACGACTTCTGCGATCCCTTCATTGTGTGGGAAGGTCCCTTCGGCTCCGGTTCCAGGAGCTGTTGCTGCTGGGTCACGGGACGGCATTCCGTCCCAACCTTGGTTACAGGATGAAAGAGAGCTGAAAAGACAAAGAAGGAAGCAGTCAAACAGAGAATCTGCTCGTAGATCTCGGTTGCGTAAACAGGCTGAATGCGATGAGCTGTCTCAGCGCGCGGAAGCTTTGAAGGAAGAAAATGCGAGTCTTAGATCTGAAGTGGATAGGATTAGGAGTGAGTACGAGCAACTTCTTTCAGAAAATGCCTCTCTCAAGAGGAGGCTTGGAGAAAGTGATGGAAATGAAGATCCAAGATCTGCCAAAGCCAAAGACGGCCAAAATTTGAATAAAGGTCACCATACATCCCGGACCCAACTCGCTAAAGGAACTGACCCGTGTCGTCTCGGGACTGTTGATTCTTACGGAGGCTTCATCTTTAACCCGAAGCTCTGTGTAGTATCCTTGTATCCAAATTTGATGAATGTTATGCAACATTTCACTTGA | 1341 | 46.01 | MAQTRIMGGSEMNKSTKEESKTTPATTQEQSPNTSTGTVNPEWSGFQAYSPIPPPGYLATSPQAHTYMWGVQPIMPPYGTPPHPYVAMYPHGGIYAHPPMPPGSYPYSPFAIASPNGIAEASGNTPGNMEGEGKPSELKEKLPIKRSKGSLGSLSMITGKNNELGKPSGTSANGVYSKSAESESEGTSERSGADSENDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHSLAHPLVNQTMSMIPIQASGAVTGPATNLNIGMDYWGTPTTSAIPSLCGKVPSAPVPGAVAAGSRDGIPSQPWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRSEYEQLLSENASLKRRLGESDGNEDPRSAKAKDGQNLNKGHHTSRTQLAKGTDPCRLGTVDSYGGFIFNPKLCVVSLYPNLMNVMQHFT | 446 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 11509437 | 11520416 | + | CrPI670011_09g011040.1 | Cre09g1104 | 507772 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g1104 | 446 | MobiDBLite | consensus disorder prediction | 19 | 45 | - | - | |
Cre09g1104 | 446 | MobiDBLite | consensus disorder prediction | 371 | 396 | - | - | |
Cre09g1104 | 446 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 312 | 327 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g1104 | 446 | MobiDBLite | consensus disorder prediction | 368 | 411 | - | - | |
Cre09g1104 | 446 | MobiDBLite | consensus disorder prediction | 286 | 330 | - | - | |
Cre09g1104 | 446 | MobiDBLite | consensus disorder prediction | 118 | 229 | - | - | |
Cre09g1104 | 446 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 307 | 370 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g1104 | 446 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 28 | 393 | IPR044827 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0043565(InterPro) | |
Cre09g1104 | 446 | SMART | brlzneu | 305 | 369 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g1104 | 446 | Coils | Coil | 318 | 373 | - | - | |
Cre09g1104 | 446 | Pfam | G-box binding protein MFMR | 7 | 101 | IPR012900 | - | |
Cre09g1104 | 446 | Pfam | bZIP transcription factor | 305 | 367 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g1104 | 446 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Cre09g1104 | 446 | Pfam | Disordered region downstream of MFMR | 140 | 273 | - | - | |
Cre09g1104 | 446 | SUPERFAMILY | Leucine zipper domain | 308 | 364 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g1104 | 446 | CDD | bZIP_plant_GBF1 | 310 | 360 | IPR045314 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g1104 | 446 | Gene3D | - | 308 | 362 | - | - | |
Cre09g1104 | 446 | MobiDBLite | consensus disorder prediction | 151 | 182 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0183 | Cre-Chr5:1854128 | Cre09g1104 | Cre-Chr9:11509437 | 2.30E-28 | transposed | |
Cre10g0387 | Cre-Chr10:2647396 | Cre09g1104 | Cre-Chr9:11509437 | 6.80E-117 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54354 | PF16596 | MFMR_assoc | 6.90E-45 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g1104 | K09060 | - | csv:101214217 | 754.207 |