Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1104 ATGGCTCAGACAAGAATCATGGGTGGCAGTGAGATGAATAAATCCACAAAGGAGGAATCCAAGACAACACCTGCCACTACACAGGAACAGTCTCCAAACACAAGCACTGGCACCGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCAATACCTCCACCTGGATATTTGGCAACAAGCCCCCAGGCACACACATATATGTGGGGGGTACAGCCTATTATGCCCCCTTATGGAACCCCTCCACACCCGTATGTTGCAATGTATCCTCATGGTGGCATATATGCTCATCCGCCTATGCCTCCGGGATCATATCCTTACAGTCCTTTTGCCATAGCTTCTCCAAATGGCATTGCTGAGGCTTCTGGGAATACTCCAGGCAACATGGAAGGGGAAGGTAAGCCATCTGAGCTGAAAGAAAAATTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAGCATGATAACTGGGAAGAACAATGAGCTTGGTAAACCATCAGGAACATCTGCTAACGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGCACAAGTGAAAGAAGTGGTGCTGACTCTGAAAATGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTGGAGGGACTCCTAATGGTTTAATGCATGGTTCTCAGAATGAAGGACATAGTCTTGCGCATCCATTGGTGAACCAAACAATGTCCATGATACCAATTCAAGCTTCTGGAGCCGTTACAGGTCCTGCTACAAATTTGAATATAGGAATGGATTATTGGGGTACCCCAACGACTTCTGCGATCCCTTCATTGTGTGGGAAGGTCCCTTCGGCTCCGGTTCCAGGAGCTGTTGCTGCTGGGTCACGGGACGGCATTCCGTCCCAACCTTGGTTACAGGATGAAAGAGAGCTGAAAAGACAAAGAAGGAAGCAGTCAAACAGAGAATCTGCTCGTAGATCTCGGTTGCGTAAACAGGCTGAATGCGATGAGCTGTCTCAGCGCGCGGAAGCTTTGAAGGAAGAAAATGCGAGTCTTAGATCTGAAGTGGATAGGATTAGGAGTGAGTACGAGCAACTTCTTTCAGAAAATGCCTCTCTCAAGAGGAGGCTTGGAGAAAGTGATGGAAATGAAGATCCAAGATCTGCCAAAGCCAAAGACGGCCAAAATTTGAATAAAGGTCACCATACATCCCGGACCCAACTCGCTAAAGGAACTGACCCGTGTCGTCTCGGGACTGTTGATTCTTACGGAGGCTTCATCTTTAACCCGAAGCTCTGTGTAGTATCCTTGTATCCAAATTTGATGAATGTTATGCAACATTTCACTTGA 1341 46.01 MAQTRIMGGSEMNKSTKEESKTTPATTQEQSPNTSTGTVNPEWSGFQAYSPIPPPGYLATSPQAHTYMWGVQPIMPPYGTPPHPYVAMYPHGGIYAHPPMPPGSYPYSPFAIASPNGIAEASGNTPGNMEGEGKPSELKEKLPIKRSKGSLGSLSMITGKNNELGKPSGTSANGVYSKSAESESEGTSERSGADSENDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHSLAHPLVNQTMSMIPIQASGAVTGPATNLNIGMDYWGTPTTSAIPSLCGKVPSAPVPGAVAAGSRDGIPSQPWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRSEYEQLLSENASLKRRLGESDGNEDPRSAKAKDGQNLNKGHHTSRTQLAKGTDPCRLGTVDSYGGFIFNPKLCVVSLYPNLMNVMQHFT 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11509437 11520416 + CrPI670011_09g011040.1 Cre09g1104 507772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1104 446 MobiDBLite consensus disorder prediction 19 45 - -
Cre09g1104 446 MobiDBLite consensus disorder prediction 371 396 - -
Cre09g1104 446 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 312 327 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g1104 446 MobiDBLite consensus disorder prediction 368 411 - -
Cre09g1104 446 MobiDBLite consensus disorder prediction 286 330 - -
Cre09g1104 446 MobiDBLite consensus disorder prediction 118 229 - -
Cre09g1104 446 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 307 370 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g1104 446 PANTHER G-BOX-BINDING FACTOR 3-RELATED 28 393 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0043565(InterPro)
Cre09g1104 446 SMART brlzneu 305 369 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g1104 446 Coils Coil 318 373 - -
Cre09g1104 446 Pfam G-box binding protein MFMR 7 101 IPR012900 -
Cre09g1104 446 Pfam bZIP transcription factor 305 367 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g1104 446 MobiDBLite consensus disorder prediction 1 47 - -
Cre09g1104 446 Pfam Disordered region downstream of MFMR 140 273 - -
Cre09g1104 446 SUPERFAMILY Leucine zipper domain 308 364 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g1104 446 CDD bZIP_plant_GBF1 310 360 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g1104 446 Gene3D - 308 362 - -
Cre09g1104 446 MobiDBLite consensus disorder prediction 151 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0183 Cre-Chr5:1854128 Cre09g1104 Cre-Chr9:11509437 2.30E-28 transposed
Cre10g0387 Cre-Chr10:2647396 Cre09g1104 Cre-Chr9:11509437 6.80E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54354 PF16596 MFMR_assoc 6.90E-45 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1104 K09060 - csv:101214217 754.207