Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1112 ATGGAGCTATTTCCAGCACAACCAGATTTATCACTCCAAATTAGCCCTCCAAATACCAATAAACCCTCTTCATCTTGGAGAAGAACAAGTAGTTCTTCACAAGAAGAAGTTGATTTGGGGTTTTGGAATAATCTTAGTTTGGAGTCTTCTTCTAAATCCACTCCCAAACATCATCATCCGCATCATCATCATCTTCATCATCTTCATCCTCACTCTTGTTTTGATCTCTCTCTCTCAAATTTAACCCAAATTAACCATCATCAATACCCAAACATTTCTCCTCCTCCTAGTACTCCTAATCATCTTCTTCATCATCATCATCATCATCGTTATCCCGCTCTCGATACCACCGCACACCTTTTCGAAACCCTAAACAAAACCCACCACCGACCCGCCATTTTTCACCAGACGCCATCACTTGACCCGCCACCACCTCCCTCGCTCCCGTTTCCGGGCCAAACCAATGGGCAAGACTTGGGATTTTTGCGACCCATTAGAGGAATTCCAGTGTACCATCAGACGAATAACCCCTCCGGCACCGGAAACGGCGGTGTTGTCACTCCCTCCGCTGCTGGTCACGGCCAGATTATGATGCGATCGAGATTCTTGTCGAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCTCGGATGAGATGGACTTCCACACTTCATGCTCGCTTTGTTCATGCTGTTGAACTTCTTGGTGGCCATGAAAGAGCTACGCCCAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACTTTAGCTCATGTCAAATCTCATTTACAGATGTACCGTACAGTGAAGACCACAGACAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGACATTCAAAAACCAGCCATGGGAAGACAAAATGACAACTCAATTCAACAAACAACAAGGCAAAACCCTCACCAAGATAAGGATTATCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTACCAAATGATTCTTCTAGGGACCTTTCTTCATCCCTCGAGAATGATATGGATCCAAAGTGCTCAAACAATGAGAGACTATCAGAAATAAGCTCATCAACCGATCTTTGTGGTGTGACAAATAATCCTCATCAGAAGCCTAATTTAGAATTCACATTAGGAAGGCCAATTTGA 1209 44.0 MELFPAQPDLSLQISPPNTNKPSSSWRRTSSSSQEEVDLGFWNNLSLESSSKSTPKHHHPHHHHLHHLHPHSCFDLSLSNLTQINHHQYPNISPPPSTPNHLLHHHHHHRYPALDTTAHLFETLNKTHHRPAIFHQTPSLDPPPPPSLPFPGQTNGQDLGFLRPIRGIPVYHQTNNPSGTGNGGVVTPSAAGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPAMGRQNDNSIQQTTRQNPHQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDMDPKCSNNERLSEISSSTDLCGVTNNPHQKPNLEFTLGRPI 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11664730 11669477 - CrPI670011_09g011120.1 Cre09g1112 507780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1112 402 FunFam Myb family transcription factor 213 271 - -
Cre09g1112 402 MobiDBLite consensus disorder prediction 11 32 - -
Cre09g1112 402 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 401 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Cre09g1112 402 MobiDBLite consensus disorder prediction 49 68 - -
Cre09g1112 402 Pfam Myb-like DNA-binding domain 216 267 IPR001005 -
Cre09g1112 402 MobiDBLite consensus disorder prediction 1 32 - -
Cre09g1112 402 SUPERFAMILY Homeodomain-like 212 268 IPR009057 -
Cre09g1112 402 MobiDBLite consensus disorder prediction 350 369 - -
Cre09g1112 402 NCBIfam myb-like DNA-binding domain, SHAQKYF class 215 268 IPR006447 GO:0003677(InterPro)
Cre09g1112 402 Gene3D - 214 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1112 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2130 Cre-Chr5:33126816 Cre09g1112 Cre-Chr9:11664730 4.00E-30 dispersed
Cre08g1490 Cre-Chr8:27707442 Cre09g1112 Cre-Chr9:11664730 1.90E-32 dispersed
Cre09g1112 Cre-Chr9:11664730 Cre11g0564 Cre-Chr11:2683005 2.60E-17 dispersed
Cre05g1232 Cre-Chr5:12071821 Cre09g1112 Cre-Chr9:11664730 4.60E-45 transposed
Cre09g1669 Cre-Chr9:34406179 Cre09g1112 Cre-Chr9:11664730 7.00E-34 transposed
Cre10g0392 Cre-Chr10:2744250 Cre09g1112 Cre-Chr9:11664730 8.00E-69 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0421 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.1e-79 293.9
Cre01g0200 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.7e-42 168.3
Cre02g2184 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.8e-40 162.2
Cre07g0585 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.1e-39 161.0
Cre04g1728 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.8e-37 152.5
Cre05g1232 . 163 363 G2-like Transcription Factor Family AT5G16560 56.5 8.7e-45 178.3
Cre09g1112 . 197 401 G2-like Transcription Factor Family AT5G16560 51.7 1.3e-40 164.5
Cre05g2130 . 1 167 G2-like Transcription Factor Family AT5G42630 58.9 5.5e-41 164.9
Cre08g1490 . 53 139 G2-like Transcription Factor Family AT5G42630 83.9 1.4e-36 150.2
Cre05g2473 . 19 256 G2-like Transcription Factor Family AT1G25550 55.1 3.5e-53 205.7
Cre08g0476 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.6e-52 201.4
Cre03g0444 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 2.7e-60 229.6
Cre04g0637 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.5e-74 275.0
Cre10g1770 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 7.5e-69 257.7
Cre05g0421 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 2.5e-65 246.1
Cre05g0421 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.1e-79 293.9
Cre01g0200 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.7e-42 168.3
Cre02g2184 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.8e-40 162.2
Cre07g0585 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.1e-39 161.0
Cre04g1728 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.8e-37 152.5
Cre11g1402 . 1 228 G2-like Transcription Factor Family AT1G69580 55.6 2.9e-49 193.0
Cre01g0200 . 1 389 G2-like Transcription Factor Family AT1G79430 53.7 6.5e-84 308.1
Cre02g2184 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 8.0e-74 274.6
Cre05g0421 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.7e-39 159.5
Cre04g1727 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.2e-56 216.1
Cre04g0637 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.4e-91 333.6
Cre10g1770 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 3.0e-83 305.8
Cre04g0637 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.7e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54356 None None None None Cre TF