Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1114 ATGTATGGGGATTGCCAAGTGATGACAAGCAATATGGGAGGAAATATGGTTTCCTCTGAATCTCTCTTCTCTTCTCCCATTCAAAACCCTAATTTCAATTTCATGTCCAATTTTCAACATTTTCCTTCCATTGTTCCTAAGGAAGAAAATGGGTTGATGATGAGAGGAAAAGAAGATATGGAAAGTGGGTCTGGAAGTGAACAACTTGTTGAAGAAAATCAAGGAATTGAAATGGAAAGTAATAATAATAATGATATTATTCAGCAAAATCAAAAGAAAAAACGCTATCATAGACATACCGCTCGCCAGATCCAAGAAATGGAAGCATTATTTAAGGAATGTCCACACCCAGATGACAAGCAAAGGCTAAAACTCAGCCAAGAACTTGGCCTTAAACCTCGCCAAGTCAAATTTTGGTTCCAAAATCGAAGAACCCAAATGAAGGCACAACAAGATAGATCTGATAATGTGATACTTAGGGCAGAAAATGAGAGCTTAAAGAATGAGAATTATAGATTGCAAACTGCCCTAAGAAACATCATATGCCCTAGCTGTGGAGGGCAGGGTATCCTAGGGGAACCAAGCTTGGATGAACAACAGCTTCGCCTTGAAAATGCAAGACTTAGAGATCAGTTAGAACAAGTTTGCTCCTTGACCACAAGATACACTGGTCGCCCAATCCAAGGGATGCCCTCCACAGCTCCTCTTATGCAACCATCTTTGGATTTGGACATGAACATATACTCAAGGCAATACACAGAGGCCATTGTTTCGTCATCCGAAATGATGCCGTTGCCCTCGATGCTCCCACCCGAGACCGCCCACTTTCCAGAGGGTGGCCTATTAATTGAGGAGGAAAAAACACTTGCAATGGAGCTTGCTGTTTCGTCCATAGCTGAGCTTGTGAAGATGTGTCGCTCGACCGAGCCTCTTTGGGTTCGAGACAGCGAGAGCGGTAAGGAAATGCTAAATGTAGAAGAGCATGGGAGAATGTTTCCATGGCCGCTGAACCTCAAACAACACTTGATCAATGAGTTTAGGACCGAAGCCACTCGCGATAGCGCCGTTGTTATAATGAATAGCATCACTCTCGTCGATGCCTTTCTCGATGCCAACAAATGGATGGAATTATTTCCTTCCATTGTGGCCAAAGCAAAGACTGTGCAAGTCATTTCATCAAGTGTTTCAGGCCATGCCACTTCTTCCCTTCAGCTGATGTATGCAGAACTTCAGACTCTTTCTCCTCTAGTTCCGACGAGAGAAGCGCATTTTCTCCGGTGCTGCCAACAGAACACCGACGAAGGAAGCTGGACCGTCGTTGATTTTCCGATCGACAGCTTCCATGACAGTCTTCAGCATTCGTTTCCCAGATATAGGAGAAAGCCCTCTGGCTGCATTATTCAAGACATGCCCAATGGATATTCTAGGGTTACATGGGTGGAGCATGCAGAGATAGAAGAGAAGCCAATCCATCAAATATTCAATAATTTTGTGCATAGTGGAATGGCTTTTGGGGCACATCGTTGGTTGGCTATCTTACAAAGACAATGTGAGAGAATTGCAAGTCTCATGGCTAGAAATATTTCTGACCTTGGAGTAATACCTTCACCAGAAGCAAGACAAAACCTAATGAAACTTGCACAAAGAATGATTAGAACTTTCTCAGTCAACATAAGCACATCAGGTGGCCAGTCGTGGACGGCGTTATCCGATTCTCCTGACGATACCGTTCGTATAACCACTCGAAAAGTCGTCGAGCCTGGCCAACCCAATGGGGTCATTCTTAGCGCTGTCTCGACCACTTGGCTTCCTTATCCTCATTATCGAGTCTTCGATCTTCTACGAGACGAGCGACGTCGGTCTCAGCTGGAGGTTCTTTCCAATGGGAATTCCTTGCATGAGGTTGCTCACATTGCTAATGGCTCCCACCCTGGCAATTGCATCTCTCTTCTTCGTATCAATGTGGCCAGCAACTCCTCCCAGCATGTTGAGCTGATGCTGCAGGAGAGTTGCACTGACCAGTCCGGCAGTCTCGTCGTCTACGCGACGATTGACGTCGATTCGATTCAGTTAGCAATGAGTGGAGAAGACCCCTCTTGCATTCCTCTCCTCCCCATAGGGTTTTCCATTGTCCCTGCCATCGGGTCAACCGTCGGCGGACACCCAGCACCGCCACCCGAGGACGGTACCACGAATGCCAACTCCGGCTGCCTCCTTACCGTTGGTTTGCAAGTTCTAGCCAGCACCATCCCGTCGGCGAAGCTCAACTTATCAAGCGTAACTGCCATCAACAACCACCTCTGTAATACGGTGCACCAAATCAACATGGCTCTCGGCAGCCCAGGTCGTCTTGAGAACGGCAATAACGTGGCCGAGCCGAATAATGCACCGACGCCGCCGCCGCCGCCGCCGCCGCCCAAGCAATAA 2427 47.05 MYGDCQVMTSNMGGNMVSSESLFSSPIQNPNFNFMSNFQHFPSIVPKEENGLMMRGKEDMESGSGSEQLVEENQGIEMESNNNNDIIQQNQKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENESLKNENYRLQTALRNIICPSCGGQGILGEPSLDEQQLRLENARLRDQLEQVCSLTTRYTGRPIQGMPSTAPLMQPSLDLDMNIYSRQYTEAIVSSSEMMPLPSMLPPETAHFPEGGLLIEEEKTLAMELAVSSIAELVKMCRSTEPLWVRDSESGKEMLNVEEHGRMFPWPLNLKQHLINEFRTEATRDSAVVIMNSITLVDAFLDANKWMELFPSIVAKAKTVQVISSSVSGHATSSLQLMYAELQTLSPLVPTREAHFLRCCQQNTDEGSWTVVDFPIDSFHDSLQHSFPRYRRKPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNNFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSVNISTSGGQSWTALSDSPDDTVRITTRKVVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVVYATIDVDSIQLAMSGEDPSCIPLLPIGFSIVPAIGSTVGGHPAPPPEDGTTNANSGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINMALGSPGRLENGNNVAEPNNAPTPPPPPPPPKQ 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11791150 11799306 - CrPI670011_09g011140.1 Cre09g1114 507782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1114 808 Gene3D - 334 517 IPR023393 -
Cre09g1114 808 SMART START_1 292 519 IPR002913 GO:0008289(InterPro)
Cre09g1114 808 SUPERFAMILY Bet v1-like 285 521 - -
Cre09g1114 808 Pfam Homeodomain 93 148 IPR001356 GO:0003677(InterPro)
Cre09g1114 808 SUPERFAMILY Bet v1-like 556 774 - -
Cre09g1114 808 CDD START_ArGLABRA2_like 287 518 - -
Cre09g1114 808 SUPERFAMILY Homeodomain-like 81 151 IPR009057 -
Cre09g1114 808 MobiDBLite consensus disorder prediction 779 808 - -
Cre09g1114 808 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 83 778 IPR042160 -
Cre09g1114 808 SMART HOX_1 91 154 IPR001356 GO:0003677(InterPro)
Cre09g1114 808 MobiDBLite consensus disorder prediction 794 808 - -
Cre09g1114 808 Pfam START domain 293 519 IPR002913 GO:0008289(InterPro)
Cre09g1114 808 ProSiteProfiles START domain profile. 283 522 IPR002913 GO:0008289(InterPro)
Cre09g1114 808 CDD homeodomain 93 151 IPR001356 GO:0003677(InterPro)
Cre09g1114 808 Coils Coil 149 169 - -
Cre09g1114 808 FunFam Homeobox-leucine zipper protein HDG1 79 166 - -
Cre09g1114 808 Gene3D - 78 161 - -
Cre09g1114 808 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre09g1114 808 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0260 Cre-Chr5:2446888 Cre09g1114 Cre-Chr9:11791150 1.20E-145 dispersed
Cre05g0978 Cre-Chr5:9008584 Cre09g1114 Cre-Chr9:11791150 7.40E-149 dispersed
Cre05g1245 Cre-Chr5:12423994 Cre09g1114 Cre-Chr9:11791150 9.60E-119 dispersed
Cre07g1671 Cre-Chr7:32164351 Cre09g1114 Cre-Chr9:11791150 8.10E-124 dispersed
Cre09g0182 Cre-Chr9:2056253 Cre09g1114 Cre-Chr9:11791150 4.40E-111 dispersed
Cre09g1114 Cre-Chr9:11791150 Cre10g0495 Cre-Chr10:4074247 5.90E-08 dispersed
Cre09g1114 Cre-Chr9:11791150 Cre06g0780 Cre-Chr6:1186091 7.10E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54358 PF01852 START 1.60E-43 CL0209 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1114 - - - 0.0