Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1119 ATGAGAAACCATGGGAATACAGTTTCATATGATCATGAAGAAGAAAATGAAGATGAAGTTAGTATGAAGAAGAGGAAGAATGATGAAGAAGAAGAAGAAGATGATGGGAAGAAGAAGAAGAAGAAGAAGAAAGAGCAGCAAAATAAAGTTGCTTTTTATAAACTCTTTGCTTTTGCTGATTTTTATGATTATTTTCTCATGAGTTTTGGTTCTATTGGAGCTTGTATCCATGGTGCTTCTGTTCCTGTCTTCTTCATTTTCTTTGGAAAACTCATTAATATCATTGGCATGGCTTATCTTTTCCCTGAAGATGCTGCTCCCAAAGTTGCTAAGTACTCTTTGGATTTTCTATATCTCAGTGTGGTTATACTATTTTCATCATGGGCAGAGGTGGCTTGTTGGATGCATAGTGGAGAGAGGCAAGCAGCAAAGATGAGAATGGCTTATTTAAAATCAATGTTAAATCAAGACATTAGCCTTTTTGACACTGAAGCTTCAACTGGTGAAGTCATTGCTGCTATTACTAGTGACATTGTTATTGTTCAAGATGCCATTTCTGAAAAAGTAGGGAACTTTTTGCATTATATAAGCCGGTTTATATCAGGGTTTATCATCGGATTTGTGAGGGTATGGCAAATCAGTCTTGTCACATTATCTATTGTCCCTTTGATTGCCCTTGCTGGTGGTCTCTATGCATTTGTCACCATTGGTCTTATTGCCAAAGTAAGAAAATCTTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTTTAGGAAATGTAAGAACAGTTCAAGCCTTTGCTGGGGAAGAAAGAGCAGTAAATTTATACAAAGGAGCTCTCAAGAATACCTACAAGTATGGTAGAAAAGCAGGGCTGGCTAAGGGACTGGGCCTGGGATCAATGCATTGTGTCCTTTTCTTGTCATGGGCTCTGCTAGTTTGGTTTACCAGCATTGTTGTCCACAAGGGCATTGCCAATGGTGGAGACTCCTTCACCACAATGCTTAATGTTGTCATTTCTGGCTTGTCACTTGGGCAGGCCGCACCAGACATTTCCGCCTTTGTTCGAGCAAAGGCAGCAGCATATCCTATTTTTCAGATGATAGAGAGGAACACAGTTAGCAAAAGCAGCTCCAAAACTGGCCGGAAACTGAATAAGCTTGATGGTCATATTCAATTCAAGGATGTTAATTTCAGCTACCCATCTCGTTTGGATGTAATTATATTTAATAAGTTATCTCTTGATATTCCTGCGGGCAAGATTGTAGCTCTTGTGGGAGGAAGTGGATCAGGAAAGAGCACGGTGATATCTTTGATTGAACGATTCTATGAACCCCTTTCTGGAGAGATTCTATTGGATGGTAATAACATCAAGGAGCTGGATCTCAAGTGGCTAAGGCAGCAAATTGGTTTGGTCAATCAAGAGCCTGCCCTCTTTGCTACAAGCATTAGGGAGAACATTCTATATGGAAAAGATGATGCTACCCTTGAGGACATAACGCGTGCAGCCAAACTTTCTGAGGCTTTATCATTTATAAACAATCTCCCTGAAAGATTTGAAACTCAGGTTGGTGAGAGAGGGGTCCAATTATCAGGGGGACAAAAACAAAGGATTGCAATCTCTCGTGCAATCGTTAAAAATCCATCAATCTTGTTGCTGGATGAGGCAACAAGTGCACTAGATGCAGAATCTGAAAAGAGTGTACAAGAGGCACTCGATCGCGTCATGGTTGGTCGAACGACTGTAGTGGTGGCTCATCGTTTATCTACCATACGGAATGCAGATGTGATTGCTGTCGTTCAAGAAGGAAAGATAGTTGAAACCGGAAGCCATGATGAGCTCATTTCAAAGCCAGACAGTGTCTATGCATCACTTGTCCAGTTCCAAGAAACATCATCTCTGCAACGCCATCCCTCGATTGGGCAGTTGGGTCGACCACCTAGTATAAAGTACTCTCGAGAATTATCTCGCACTACAACGAGCTTTGGTGCAAGTTTTCGCTCCGAGAAAGAATCTCTTGGACGGATTGGAGTTGATGGAATGGAAATGGAGAAACCAAAGCATGTTTCAGCAAGAAGACTTTACTCCATGGTTGGACCAGATTGGATGTATGGCATTGTCGGCGTCATTGGAGCATTCGTTACAGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTGCATTTTACATGGACTGGAATACAACTCAACATGAGATCAAGAAAATTTCATTGCTTTTCTGTGGCGGTGCAGTTTTAACTGTCATTTTTCATGCAGTTGAGCATCTTTGTTTTGGAATTATGGGAGAGCGACTTACTCTTCGAGTTCGAGAAAAGATGTTCCATGCTATTCTGAGAAACGAGATAGGATGGTTCGATGATATGAACAACACAAGTTCTATGCTTTCATCACGTCTAGAAACTGATGCAACTTTATTACGAACTATCGTTGTCGACCGCTCTACAATTCTTCTGCAGAATCTAGCTTTGGTCGTTGCATCGTTCATCATTGCTTTCATTTTGAATTGGAGAATCACTCTAGTTGTCCTGGCCACTTATCCATTGATCATTAGCGGTCACATTAGCGAGAAACTTTTTATGCAAGGCTACGGTGGAAATTTGAGCAAAGCATACCTGAAAGCCAATACACTGGCCGGTGAGGCAGTTGGCAACATTAGGACTGTTGCTGCATTTTGTTCTGAGCAGAAGGTCCTTGATCTATATGCTAAGGAGCTCGTTGAGCCCTCGAGACGTTCGCTTAAACGTGGACAGATTGCTGGAATATTTTATGGTGTCTCCCAGTTCTTCATCTTTTCATCTTACGGTCTAGCCTTGTGGTACGGTTCGGTCTTGATGGGACAGGGGCTTGCTAGCTTCAAATCTGTTATGAAATCATTCATGGTTTTGATAGTAACTGCCTTAGCAATGGGTGAAACTTTGGCATTGGCCCCTGACCTTTTAAAGGGAAACCAGATGGTGGCATCCGTGTTTGAGGTGATGGATCGACAGACAGAGGTGTCGGGTGATGTTGGTGAAGAGCTAAATGTGGTGGAGGGTACCATTGAGCTGAGGAGTGTTGAGTTCAGCTATCCATCAAGACCAGATGTTTTGATCTTCAAAGATTTCAATCTTAAAGTGAGAGCAGGCAAGAGTATAGCCTTAGTTGGGCAAAGCGGTTCGGGGAAAAGCTCGGTTCTAGCTCTTATACTGCGATTTTACGATCCAATTGCTGGGAAGGTGATGATTGATGGAAAAGATATTAAAAAACTGAAGCTCAAATCTCTCAGAAAGCACATCGGCCTCGTCCAACAGGAACCGGCTCTTTTTGCCACGTCAATTTACGAGAACATTCTTTATGGGAAAGAAGGAGCTTCAGAAGCCGAAGTATTCGAAGCAGCGAAACTCGCCAATGCTCATAACTTCATCAGTGCTCTTCCTGAAGGCTACTCAACAAAAGTCGGGGAAAGAGGGATCCAACTTTCGGGTGGCCAACGACAGAGGATCGCCATTGCAAGAGCAGTCCTGAAGAACCCGGAAATACTACTACTCGACGAAGCTACGAGTGCTCTCGACGTCGAATCGGAACGTGTGGTTCAGCAAGCCTTAGACAGATTGATGATGAACAGAACAACTGTGGTGGTTGCACATAGGCTTTCTACCATTAAAAACTGTGACCAAATCTCAGTGATTCAAGATGGGAAGATTGTAGAACAAGGAACTCATTCAAGCCTTTCCGACAACAAAAATGGAGCTTATTACAAGTTAATCAACATCCAACAACAGCAACAAAGACAGTGA 3810 42.52 MRNHGNTVSYDHEEENEDEVSMKKRKNDEEEEEDDGKKKKKKKKEQQNKVAFYKLFAFADFYDYFLMSFGSIGACIHGASVPVFFIFFGKLINIIGMAYLFPEDAAPKVAKYSLDFLYLSVVILFSSWAEVACWMHSGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVIAAITSDIVIVQDAISEKVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFAGEERAVNLYKGALKNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKGIANGGDSFTTMLNVVISGLSLGQAAPDISAFVRAKAAAYPIFQMIERNTVSKSSSKTGRKLNKLDGHIQFKDVNFSYPSRLDVIIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISKPDSVYASLVQFQETSSLQRHPSIGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGVDGMEMEKPKHVSARRLYSMVGPDWMYGIVGVIGAFVTGSQMPLFALGVSQALVAFYMDWNTTQHEIKKISLLFCGGAVLTVIFHAVEHLCFGIMGERLTLRVREKMFHAILRNEIGWFDDMNNTSSMLSSRLETDATLLRTIVVDRSTILLQNLALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEQKVLDLYAKELVEPSRRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEELNVVEGTIELRSVEFSYPSRPDVLIFKDFNLKVRAGKSIALVGQSGSGKSSVLALILRFYDPIAGKVMIDGKDIKKLKLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVFEAAKLANAHNFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMMNRTTVVVAHRLSTIKNCDQISVIQDGKIVEQGTHSSLSDNKNGAYYKLINIQQQQQRQ 1269
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 11879531 11888390 + CrPI670011_09g011190.1 Cre09g1119 507787
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1119 1269 Gene3D - 389 642 IPR027417 -
Cre09g1119 1269 Gene3D ABC transporter type 1, transmembrane domain 9 100 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cre09g1119 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 391 627 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre09g1119 1269 PANTHER ABC TRANSPORTER B FAMILY 12 652 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Cre09g1119 1269 Pfam ABC transporter 410 558 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre09g1119 1269 FunFam ABC transporter B family member 19 381 630 - -
Cre09g1119 1269 CDD ABC_6TM_Pgp_ABCB1_D2_like 695 1010 - -
Cre09g1119 1269 Pfam ABC transporter transmembrane region 72 339 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cre09g1119 1269 Pfam ABC transporter transmembrane region 706 977 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cre09g1119 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 629 IPR027417 -
Cre09g1119 1269 SUPERFAMILY ABC transporter transmembrane region 684 1006 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cre09g1119 1269 SMART AAA_5 418 610 IPR003593 GO:0016887(InterPro)
Cre09g1119 1269 SMART AAA_5 1052 1224 IPR003593 GO:0016887(InterPro)
Cre09g1119 1269 FunFam ABC transporter B family member 4 1015 1268 - -
Cre09g1119 1269 ProSitePatterns ABC transporters family signature. 530 544 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre09g1119 1269 CDD ABC_MTABC3_MDL1_MDL2 391 629 - -
Cre09g1119 1269 MobiDBLite consensus disorder prediction 1 41 - -
Cre09g1119 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 69 356 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cre09g1119 1269 CDD ABC_MTABC3_MDL1_MDL2 1025 1260 - -
Cre09g1119 1269 Pfam ABC transporter 1044 1192 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre09g1119 1269 Gene3D ABC transporter type 1, transmembrane domain 116 994 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cre09g1119 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 706 992 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cre09g1119 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1025 1261 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre09g1119 1269 Gene3D - 1016 1269 IPR027417 -
Cre09g1119 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1019 1263 IPR027417 -
Cre09g1119 1269 CDD ABC_6TM_Pgp_ABCB1_D1_like 67 364 - -
Cre09g1119 1269 Coils Coil 12 49 - -
Cre09g1119 1269 SUPERFAMILY ABC transporter transmembrane region 55 361 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cre09g1119 1269 ProSitePatterns ABC transporters family signature. 1164 1178 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0628 Cre-Chr1:5662228 Cre09g1119 Cre-Chr9:11879531 0.00E+00 dispersed
Cre01g1503 Cre-Chr1:28275049 Cre09g1119 Cre-Chr9:11879531 4.20E-94 dispersed
Cre02g1119 Cre-Chr2:9932633 Cre09g1119 Cre-Chr9:11879531 4.10E-255 dispersed
Cre02g1120 Cre-Chr2:9946360 Cre09g1119 Cre-Chr9:11879531 8.40E-256 dispersed
Cre02g2202 Cre-Chr2:35681092 Cre09g1119 Cre-Chr9:11879531 7.70E-48 dispersed
Cre05g1720 Cre-Chr5:28913916 Cre09g1119 Cre-Chr9:11879531 0.00E+00 dispersed
Cre06g2264 Cre-Chr6:30531848 Cre09g1119 Cre-Chr9:11879531 4.40E-32 dispersed
Cre09g1119 Cre-Chr9:11879531 Cre11g1754 Cre-Chr11:29185933 9.70E-300 dispersed
Cre09g1119 Cre-Chr9:11879531 Cre10g2124 Cre-Chr10:35840639 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1119 K05658 - csv:101219304 2267.66