Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1126 ATGAGTCTTGATGCTCTTTCTTCCAATGATTTGTTCAACTTCATCATCTACGACACGATCTCCGCAACACCGAACACCCAACACGCCCTCCGCGACTCATCGGAGAATACTTTTCTCTCCGACGACAAGTGTTCGAAACCCTACTCAAGAAAACGCCGTCCGAGTGAGGGAGAGAGCAACCGAGCGACACCGTCATCAACAACGACGACGCAACAAGGGAAGAAGAAAAGGAAGAGAAAAGCAAAGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGTAAACAAATGAATGAACATCTTTCAGTCTTACGTTCCCTCATGCCCGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTAGGTGGTGCAGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTATCAACTTTAGAAGCCAAGAAGCTACAAATCTTACAACAAGAAGTAGATCATCATCAAGACCAAGAGATTAATGAAGATTCAAGAATGAGAAGGAATGATAATAATAGTAATAAGTTGTTTTCATTTGCAAGTTTGTTGATGCATAATTCAGATCAAAATAACTATTGCTCCCAATACTCAACCAAATACACATCAAAATCCAAGGCTTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCAAACCTTAGAATCCTCTCAACAAGAAGCCATAGACAACTCTTGAAGCTCATTGCTGGCTTGCAAGCTCTTCGTCTCACTATTCTTCATCTCAATCTCACTGATTTCCATCCATTGGTTCTTTACTCCATTAGCCTCAAGGTTGAAGAAGGATGCCAACTGAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAGCTGTTTTGTGTTAA 924 41.34 MSLDALSSNDLFNFIIYDTISATPNTQHALRDSSENTFLSDDKCSKPYSRKRRPSEGESNRATPSSTTTTQQGKKKRKRKAKVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLQILQQEVDHHQDQEINEDSRMRRNDNNSNKLFSFASLLMHNSDQNNYCSQYSTKYTSKSKASSADIEVTLIETHANLRILSTRSHRQLLKLIAGLQALRLTILHLNLTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEEAVLC 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12013702 12016372 - CrPI670011_09g011260.1 Cre09g1126 507794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1126 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 160 IPR036638 GO:0046983(InterPro)
Cre09g1126 307 Pfam Helix-loop-helix DNA-binding domain 93 144 IPR011598 GO:0046983(InterPro)
Cre09g1126 307 Gene3D - 83 176 IPR036638 GO:0046983(InterPro)
Cre09g1126 307 SMART finulus 98 149 IPR011598 GO:0046983(InterPro)
Cre09g1126 307 MobiDBLite consensus disorder prediction 35 58 - -
Cre09g1126 307 MobiDBLite consensus disorder prediction 31 92 - -
Cre09g1126 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 143 IPR011598 GO:0046983(InterPro)
Cre09g1126 307 PANTHER MAX DIMERIZATION, MAD 55 299 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre09g1126 307 Coils Coil 140 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1946 Cre-Chr3:36496959 Cre09g1126 Cre-Chr9:12013702 1.20E-39 dispersed
Cre05g0426 Cre-Chr5:3850628 Cre09g1126 Cre-Chr9:12013702 7.50E-35 dispersed
Cre05g1058 Cre-Chr5:9833800 Cre09g1126 Cre-Chr9:12013702 1.30E-21 dispersed
Cre09g1126 Cre-Chr9:12013702 Cre08g1073 Cre-Chr8:23834758 4.20E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54360 PF00010 HLH 1.00E-10 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1126 - - - 0.0