Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g1126 | ATGAGTCTTGATGCTCTTTCTTCCAATGATTTGTTCAACTTCATCATCTACGACACGATCTCCGCAACACCGAACACCCAACACGCCCTCCGCGACTCATCGGAGAATACTTTTCTCTCCGACGACAAGTGTTCGAAACCCTACTCAAGAAAACGCCGTCCGAGTGAGGGAGAGAGCAACCGAGCGACACCGTCATCAACAACGACGACGCAACAAGGGAAGAAGAAAAGGAAGAGAAAAGCAAAGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGTAAACAAATGAATGAACATCTTTCAGTCTTACGTTCCCTCATGCCCGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTAGGTGGTGCAGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTATCAACTTTAGAAGCCAAGAAGCTACAAATCTTACAACAAGAAGTAGATCATCATCAAGACCAAGAGATTAATGAAGATTCAAGAATGAGAAGGAATGATAATAATAGTAATAAGTTGTTTTCATTTGCAAGTTTGTTGATGCATAATTCAGATCAAAATAACTATTGCTCCCAATACTCAACCAAATACACATCAAAATCCAAGGCTTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCAAACCTTAGAATCCTCTCAACAAGAAGCCATAGACAACTCTTGAAGCTCATTGCTGGCTTGCAAGCTCTTCGTCTCACTATTCTTCATCTCAATCTCACTGATTTCCATCCATTGGTTCTTTACTCCATTAGCCTCAAGGTTGAAGAAGGATGCCAACTGAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAGCTGTTTTGTGTTAA | 924 | 41.34 | MSLDALSSNDLFNFIIYDTISATPNTQHALRDSSENTFLSDDKCSKPYSRKRRPSEGESNRATPSSTTTTQQGKKKRKRKAKVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLQILQQEVDHHQDQEINEDSRMRRNDNNSNKLFSFASLLMHNSDQNNYCSQYSTKYTSKSKASSADIEVTLIETHANLRILSTRSHRQLLKLIAGLQALRLTILHLNLTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEEAVLC | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 12013702 | 12016372 | - | CrPI670011_09g011260.1 | Cre09g1126 | 507794 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g1126 | 307 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 91 | 160 | IPR036638 | GO:0046983(InterPro) | |
Cre09g1126 | 307 | Pfam | Helix-loop-helix DNA-binding domain | 93 | 144 | IPR011598 | GO:0046983(InterPro) | |
Cre09g1126 | 307 | Gene3D | - | 83 | 176 | IPR036638 | GO:0046983(InterPro) | |
Cre09g1126 | 307 | SMART | finulus | 98 | 149 | IPR011598 | GO:0046983(InterPro) | |
Cre09g1126 | 307 | MobiDBLite | consensus disorder prediction | 35 | 58 | - | - | |
Cre09g1126 | 307 | MobiDBLite | consensus disorder prediction | 31 | 92 | - | - | |
Cre09g1126 | 307 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 92 | 143 | IPR011598 | GO:0046983(InterPro) | |
Cre09g1126 | 307 | PANTHER | MAX DIMERIZATION, MAD | 55 | 299 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cre09g1126 | 307 | Coils | Coil | 140 | 160 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g1946 | Cre-Chr3:36496959 | Cre09g1126 | Cre-Chr9:12013702 | 1.20E-39 | dispersed | |
Cre05g0426 | Cre-Chr5:3850628 | Cre09g1126 | Cre-Chr9:12013702 | 7.50E-35 | dispersed | |
Cre05g1058 | Cre-Chr5:9833800 | Cre09g1126 | Cre-Chr9:12013702 | 1.30E-21 | dispersed | |
Cre09g1126 | Cre-Chr9:12013702 | Cre08g1073 | Cre-Chr8:23834758 | 4.20E-47 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54360 | PF00010 | HLH | 1.00E-10 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g1126 | - | - | - | 0.0 |