Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1145 ATGACCGACTATCGATTACCACCGACCATGAATCTCTGGGCGGATGAGAACGTCTCCATGATGGACGTTTTCACCAACTCCGATCTCAGTTCTTTCTGGGTTACGCCGCCACAGCCACAGCAACTTCCTCAGCCACCTTATTTCACCTCAACAGACCCGAGTAAAGCCGTCGGTCAAGCAACACCGCCACCGTCCATGGCGGTTTTTAACCAGGAGACTCTTATGCAGCGTCTCCAAACGTTGATTGAAGGTGCTCATGAGAACTGGACTTACGCTATCTTCTGGCAGTCTTCGTACGACTACTCCGCCCGTACGGTCTTGGGGTGGGGGGATGGATATTACAAAGGCGAGGAAGATAAAGGGAAAGAGAAAGCTAAATCGAGTACCTCAAAAGCAGAGCAAGAACACCGGAAGAAGGTACTTCGTGAGCTTAACTCTCTCATTTCTGGTTCTCCTTCCTCTGAAGGCGACGCCGTCGATGAGGTTGTCACCGACACCGAGTGGTTCTACTTGGTGTCGATGACTCAGTCGTTTGCTTCCGGTGTTGGATTGCCGGGACAGGCGTTTTTCGATTCGACCCCTATTTGGGTTGCTGGTTCGGATCGGCTTGCGAGCTCGGTCTGTGAGCGGGCTCGTCAGGGTCAGGTTTTCGGGTTGCAGACTATGGTTTGTATACCGTCGGCGAACGGAGTTGTTGAATTGGGATCGAGTGAGTTGATTTTCCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTTAATTTCAACAATTTGGAGGTGGAGAATTGGCCAATTAGTGGGGTTGACCAAGGGGAGAATGATCCTTCTTCACTTTGGATTAGTGAGCCATCTTCAAACGCCATTGAAATTACTAATCCTGTTGCTTCAGCTTCAGCTCCAACTCCAAGCACAACAAACAGCCAACCGATTTCTAAAATTACAACAGAGACGATCGAGAACCCTAAATCTAGTGCTGTAATTGAAACTCCGAGCTCTGTTGTTCCTCCTCCTTCTCAAAAAACTCACCGACAGTCACAGCCGATTCAGACACAGAGCTTCTTCACCAACAGGGAATTGAATTTCTCTGAATTTGGGTATGAGAATGGTCGTTTAAAGGATGGGAATTCCACTTCGTTGAAGCCGGAATCCGGTGAGATTTTGAATTTTGGGGAGAGTAAGAGGAGTTCTTATCCCAACACAGATAACAACTTGCCTTCGGGCAATTCTTTGTTTGGTGGGGATGAGAACAAGAAGAAGAGATCCCCCACTTCACGTGGGAGTAATGAAGAAGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCTTCTTCTGGGGCTGTGAAATCGGGTGTTTGCGCTGGTGATTCCGATCACTCCGATCTTGAAGCTTCGGTAATTCGTGAGGTGGAGAGTAGTAGAGTGGTGGAGCCGGAGAAACGGCCTCGGAAAAGAGGGCGAAAGCCAGCAAATGGTAGAGAAGAACCATTGAATCACGTTGAAGCAGAGAGGCAAAGGAGAGAAAAGCTTAACCAAAGATTCTATGCTCTTCGAGCTGTTGTTCCAAATGTATCCAAAATGGACAAAGCTTCACTCCTTGGTGATGCTATCTCTTACATCAATGAGCTCAGAGGGAAGCTTCAAACTGCAGAATCAGATAAGGAAGATTTGCAGAAGCAATTGGATTCAGTGAAGAAGTTGATGATGTCTTCTAATAAAGATTCGTGCATATCAAGCTCAAATCAACCCCCACCAGATCAATCATCAAACATAAACCATAGTGATATCGAAACCGATATCGACGTGAAGATAATCAGTTGGGATGCGATGATCCGAATCCAATCTAGTAAGAAAAACCATCCCGCTGCACGGCTGATGGCGGCTTTGGAAGAACTCGACTTGGATATCAACCACGCGAGCATCTCAGTTGTCAATGATCTCATGATCCAACAAGCAACTGTGAAGATGGGGAGTCGATTATACACTCAAGAGCAGCTAAGGATAGCATTATCGTCGAAAATAGGCGCAACTCGGTAG 2037 46.93 MTDYRLPPTMNLWADENVSMMDVFTNSDLSSFWVTPPQPQQLPQPPYFTSTDPSKAVGQATPPPSMAVFNQETLMQRLQTLIEGAHENWTYAIFWQSSYDYSARTVLGWGDGYYKGEEDKGKEKAKSSTSKAEQEHRKKVLRELNSLISGSPSSEGDAVDEVVTDTEWFYLVSMTQSFASGVGLPGQAFFDSTPIWVAGSDRLASSVCERARQGQVFGLQTMVCIPSANGVVELGSSELIFQSSDLMNKVRVLFNFNNLEVENWPISGVDQGENDPSSLWISEPSSNAIEITNPVASASAPTPSTTNSQPISKITTETIENPKSSAVIETPSSVVPPPSQKTHRQSQPIQTQSFFTNRELNFSEFGYENGRLKDGNSTSLKPESGEILNFGESKRSSYPNTDNNLPSGNSLFGGDENKKKRSPTSRGSNEEGMLSFTSGVILPSSGAVKSGVCAGDSDHSDLEASVIREVESSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKLMMSSNKDSCISSSNQPPPDQSSNINHSDIETDIDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMGSRLYTQEQLRIALSSKIGATR 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12527079 12529115 + CrPI670011_09g011450.1 Cre09g1145 507813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1145 678 Gene3D - 493 571 IPR036638 GO:0046983(InterPro)
Cre09g1145 678 Pfam Helix-loop-helix DNA-binding domain 498 544 IPR011598 GO:0046983(InterPro)
Cre09g1145 678 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 494 543 IPR011598 GO:0046983(InterPro)
Cre09g1145 678 FunFam Transcription factor bHLH13 487 561 - -
Cre09g1145 678 SMART finulus 500 549 IPR011598 GO:0046983(InterPro)
Cre09g1145 678 MobiDBLite consensus disorder prediction 390 432 - -
Cre09g1145 678 CDD bHLH_AtAIB_like 491 566 - -
Cre09g1145 678 Pfam Plant bHLH transcription factor, ACT-like domain 600 656 IPR054502 -
Cre09g1145 678 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 74 254 IPR025610 -
Cre09g1145 678 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 497 567 IPR036638 GO:0046983(InterPro)
Cre09g1145 678 MobiDBLite consensus disorder prediction 471 504 - -
Cre09g1145 678 MobiDBLite consensus disorder prediction 295 354 - -
Cre09g1145 678 PANTHER MYC 66 673 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Cre09g1145 678 Coils Coil 540 574 - -
Cre09g1145 678 MobiDBLite consensus disorder prediction 390 411 - -
Cre09g1145 678 MobiDBLite consensus disorder prediction 570 594 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1424 Cre-Chr4:33044068 Cre09g1145 Cre-Chr9:12527079 1.80E-15 dispersed
Cre09g1145 Cre-Chr9:12527079 Cre10g0343 Cre-Chr10:2210859 1.60E-30 dispersed
Cre11g0669 Cre-Chr11:3748052 Cre09g1145 Cre-Chr9:12527079 2.10E-06 dispersed
Cre06g1602 Cre-Chr6:11520605 Cre09g1145 Cre-Chr9:12527079 1.70E-08 transposed
Cre10g0420 Cre-Chr10:3081178 Cre09g1145 Cre-Chr9:12527079 5.10E-212 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54363 PF14215 bHLH-MYC_N 3.00E-54 CL0161 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1145 K13422 - csv:101218165 1159.44