Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1154 ATGGATTCACTTGATACTCCACCTCCACCACTTTCTGCACCGTCCAACATGGCGGTCGGAGGACAAACGGCGTATTCAAATACCATGTCCAACGCCAACAACAATGCCTCCTCCACGATTGGTCTCAATCAGCCTTCGACTCAAATGATGCCGCCTTCATCGCGATTTCCCTTCAACCCTGTGATCGCCCCTACATCCATGCCTTTGGATTCTCTCAACGTTTCTCCCTACGACGGATCGCATTCCGGCAATTTCAACGTTGATTCCGGGAAGAAAAGGAGAGGCCGGCCGAGGAAGTACGCGCCTGATGGTAACAACATTGCCTTGGGTTTGGCACCTACCACTGTTACGTCTTCTCTTCCTCACGGGGATTTGAGCGTTACTCCTGATTCGGAGCAGCCGGCCAGAAAAGCCAGGGGAAGGCCGCCGGGCTCCGGGAAGAAGCAGACCAATGCTCTTGGTTCAGGCGGCACTGGTTTTACTCCTCATGTCTTATTGGCAAAGCCTGGAGAGGATGTAGCAGCCAAAATTTTGTCCTTCTCACAGCAAGGACCACGAACTGTCTTTATTCTCTCTGCAAATGGTACTCTCAGTAATGCTACCCTTCGACACTCATCATCGTCTGGTGGTTCCGTGTCATATGAGGGCCATTATGAGATCATCTCTCTGTCAGGCTCATTTTTGCTGTCGGAGAATAATGGAACTCGAAGTCGAACAGGTGGTTTGAGTGTGCTGCTGGCTGGATCAAATGGACAGGTTCTTGGTGGTGGAGTTGCAGGAATGTTAATGGCAGGTTCTCAAGTACAGGTGATTGTGGGAAGTTTTCTAGAGGATGATAAAAAAACAAACACAAGTATGCTGAACTCTGGATCTTCTTCTGCACCATCACAAATGATAAACTTTGGTGGTGGTGTAGCAGCAGCAGCAGCAGCCAGCCCGCCGTCGTTAGGGGCATCGAGCGGAGAATCGTCTGCCGAAAATGGAGATAGCCCTCTTAATAATAATAGGCATCCTGGAATGTTCAATAATTCCAGCCAGCAAATCCACAATAATATTCAGATGTACCAACAATTATGGGCAGGCCAAACACAGCAGTGA 1098 49.36 MDSLDTPPPPLSAPSNMAVGGQTAYSNTMSNANNNASSTIGLNQPSTQMMPPSSRFPFNPVIAPTSMPLDSLNVSPYDGSHSGNFNVDSGKKRRGRPRKYAPDGNNIALGLAPTTVTSSLPHGDLSVTPDSEQPARKARGRPPGSGKKQTNALGSGGTGFTPHVLLAKPGEDVAAKILSFSQQGPRTVFILSANGTLSNATLRHSSSSGGSVSYEGHYEIISLSGSFLLSENNGTRSRTGGLSVLLAGSNGQVLGGGVAGMLMAGSQVQVIVGSFLEDDKKTNTSMLNSGSSSAPSQMINFGGGVAAAAAASPPSLGASSGESSAENGDSPLNNNRHPGMFNNSSQQIHNNIQMYQQLWAGQTQQ 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12747652 12751705 + CrPI670011_09g011540.1 Cre09g1154 507822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1154 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 331 IPR039605 GO:0003680(InterPro)
Cre09g1154 365 MobiDBLite consensus disorder prediction 316 344 - -
Cre09g1154 365 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 277 - -
Cre09g1154 365 ProSiteProfiles PPC domain profile profile. 157 297 IPR005175 -
Cre09g1154 365 MobiDBLite consensus disorder prediction 16 54 - -
Cre09g1154 365 MobiDBLite consensus disorder prediction 110 126 - -
Cre09g1154 365 Gene3D - 162 291 - -
Cre09g1154 365 Pfam Plants and Prokaryotes Conserved (PCC) domain 162 275 IPR005175 -
Cre09g1154 365 CDD DUF296 161 275 IPR005175 -
Cre09g1154 365 MobiDBLite consensus disorder prediction 66 86 - -
Cre09g1154 365 MobiDBLite consensus disorder prediction 312 344 - -
Cre09g1154 365 MobiDBLite consensus disorder prediction 1 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1154 Cre-Chr9:12747652 Cre09g2242 Cre-Chr9:41595614 8.50E-39 dispersed
Cre10g0427 Cre-Chr10:3144026 Cre09g1154 Cre-Chr9:12747652 2.40E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1154 - - - 0.0