Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1156 ATGGCTGGTCTGGATTTAGGCAATCGCTATATTCACCAACTTCAAAGGCCTAATTTCAACCTTCACCACCACCATCAGAACCACCACCATCCCGACTCTCAATCTGGTCATGACGACGAATCCCATCCTCCGTCAGAATTCGTCGCCGCCGCAGACTCTACCGCCCCTGCCACAGATATGGTGGCCTCTCGCCGACCACGCGGCCGTCCACCCGGTTCCAAAAACAAACCGAAGCCACCGGTCATCATAACCCGAGAAAGCGCCAATACCCTAAGGGCTCATATTCTTGAGGTTGGTAATGGCTGTGACGTCTTCGATAGCATCGCTACCTATGCTCGTCGTCGCCAGCGAGGGATCTGCATCTTGAGCGGTAGTGGAATGGTAATGAATGTCAACTTACGGCAACCGACGGCGACGGGGTCTGTGTTAACCCTACATGGAAGGTTTGAGATATTATCCCTTACTGGATCTTTCTTGCCGCCGCCTGCTCCTCCCGGCGCTACTAGTTTGACTATATACTTAGCCGGTGGGCAAGGGCAAGTGGTCGGTGGAAACGTTGTTGGGGAATTGGTGGCGGCAGGGCCAGTTACAATCATCGCGGCATCATTTACAAATGTAGCATATGAGAGATTGCCACTAGAAGAACAAGAGCAAGAACAAGAGCAAGAGCAAGATCAACTTCAGATGCAGCCACCGACGTCGCAGGGCGGCAGTACCGGTGGAAACAATAACAACCCATTTCCAGATCCATCTTCAGGGCTTCCTTTCTTCAATTTGCCTCTAAATATGCAGAACCAAATTCAGCTACCATTTTGA 816 51.35 MAGLDLGNRYIHQLQRPNFNLHHHHQNHHHPDSQSGHDDESHPPSEFVAAADSTAPATDMVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDSIATYARRRQRGICILSGSGMVMNVNLRQPTATGSVLTLHGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAAGPVTIIAASFTNVAYERLPLEEQEQEQEQEQDQLQMQPPTSQGGSTGGNNNNPFPDPSSGLPFFNLPLNMQNQIQLPF 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12775472 12776287 - CrPI670011_09g011560.1 Cre09g1156 507824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1156 271 CDD DUF296 92 175 IPR005175 -
Cre09g1156 271 ProSiteProfiles PPC domain profile profile. 88 224 IPR005175 -
Cre09g1156 271 Gene3D - 91 226 - -
Cre09g1156 271 PIRSF ESCAROLA 7 269 IPR014476 GO:0003680(InterPro)
Cre09g1156 271 MobiDBLite consensus disorder prediction 215 258 - -
Cre09g1156 271 MobiDBLite consensus disorder prediction 22 81 - -
Cre09g1156 271 MobiDBLite consensus disorder prediction 31 45 - -
Cre09g1156 271 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 204 IPR005175 -
Cre09g1156 271 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 217 - -
Cre09g1156 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 28 263 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre09g1156 271 MobiDBLite consensus disorder prediction 223 258 - -
Cre09g1156 271 FunFam AT-hook motif nuclear-localized protein 91 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0843 Cre-Chr6:1739630 Cre09g1156 Cre-Chr9:12775472 2.60E-79 dispersed
Cre09g1156 Cre-Chr9:12775472 Cre09g2174 Cre-Chr9:40811400 3.50E-66 dispersed
Cre10g0428 Cre-Chr10:3159720 Cre09g1156 Cre-Chr9:12775472 1.90E-77 wgd
Cre05g0345 Cre-Chr5:3171780 Cre09g1156 Cre-Chr9:12775472 3.00E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1156 - - - 0.0