Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1165 ATGGGTTCCATTGAAGACATTCTTGGTGAGCTTGAGAAGGATTCCTACATTTCTTTACTGTCGAAGCTCATCGGCGAGGCGAAGTTTGTCCAGAACAACCCGCCCGACCTGGTTCCCGTAGAGGATAAGATCGGCAGTCACGTTCTTGATGTTCTTCTTCCGTACAGCACTGACAATGGCGGACCCTTGAACATCAAGCAGGTCAGCTATGTTCATGGGCGTGGAAATTTGATTATTGAGTATCCAGGATCTGTTCCTACAAAAGTCGTCTCCTTCGTCGGAAGTCACATGGATGTCGTCCCTGCCGATCCCGATACTTGGGAATTTGATCCATTTTCATTGAGTATTGATGGGGATAAACTAAGAGGTCGTGGGACTACAGATTGTTTGGGACATGTTGCTCTTTTAACTGAACTCTTGAAGAAAATTGCACAAACTAAACCAAAATTGAAGTACTCAGTTGTTGTTATATTCATTGCCTCTGAAGAGAACAATTCAATCCAAGGAATTGGAGTTGAACAACTTTGGGCAGATGGATACTTTGATAATTTAAAAGGAGGCCCTCTATATTGGATTGATACAGCAGATTCACAACCTTGCATTGGTACTGGAGGTTCTTTAACTTGGTCTATTAAAACTACTGGAAAGCTTTTCCATAGTGGTATGCCAGATAAGGCTATTAATGCTTTGGAGCTAGCAATGGATGCTCTTAAACCAATCCAATTAAGCTTTTATAAAGATTTTCCTGCTCATCCTAAGGAAGCAGACTATAAATTTACAATACCATCAACCATGAAACCAACCCAATGGAATTACCCAGGAGGTGGTATTAATCAAATTCCAGGAGAATCTACTATTGCAGGAGATGTAAGGTTAACTCCCTTCTACGAAATGGATGATGTTAAGACAAAAATCCAAGGGTATGTTGATGACATTAATGCACACGTGGAGAATCTTGAATCAAGGGGCCCTGTTTCAAAGTATACCCTACCAGATGAAGGCTTAAGGGGAAGAATTGATATAAGTTTTGGTGTGCCGTTGCCCGGAATTGCATGTGATCTTGATTCCATTGGCTATAAAGTTTTATACAATGCAACAAAAAAAGTTATAGGGTATGTCAAACCTTACTCACTAACAGGGAGTTTGCCACTTGTTTATGACCTTCAGAAGGAGGGCTATGACGTTCAGAACGTTGGCTATGGCTTAACTGATACCTACCATGCAGATAATGAGTATTGTCTTTATAGTGATATGAGCAATGGCTACAAGTCTCTTAGTTTTTCCCACTTTTCCCCACCCCCGTTCTCTTCTGCTCCTTATTACTTTGGGACACGATCCGCTGGATCAGACATGCCGGTGGCTGCATCGGCCATTTACTTCCTCAATCTCCGAGGGGATGTTCTCATTAATCGTCTCTACCGCGACGATGTCGGGGGAAACATGGTGGATGCCTTCCGAACACATATAATGCAGACAAAAGAACTTGGCACCTGTCCTGTGCGGCAGATTGGTGGTTGCTCTTTCTTTTACATGAGAATTAGCAACGTATACATTGTGATTGTTGTAAGCAGCAATGCAAATGTAGCTTGTGCATTCAAGTTTGTGGTTGAGGCTGTTGCACTGTTCAAATCTTATTTTGGTGGGGCTTTTGATGAAGATGCAATTCGAAACAATTTTGTTCTTATTTATGAGCTCTTGGATGAAATAATGGATTTTGGTTACCCACAAAACCTCTCTCCTGAAATTCTAAAACTATATATCACTCAGGAAGGAGTTCGCTCGCCATTCTCATCCAAGCCTTCAGATAAACCTGTCCCAAATGCAACTTTACAAGTTACGGGTGCTGTTGGTTGGCGAAGGGAAGGCCTTGTATATAAAAAGAATGAGGTCTTTTTGGATATTGTTGAAAGTGTAAACCTTCTTATGTCTTCAAAAGGTAGTGTTCTGCGTTGCGATGTAACTGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGCATGCCTGATTTAAAGTTGGGTTTAAACGATAAGATTGGCCTTGAGAAAGAGTCACAGTTGAAGTCCCGTCCAGCTAAGAGTGGTAAAACAATTGAGCTTGATGATGTTACTTTTCATCAATGTGTAAATTTGACGAGGTTTAACTCCGAGAAGACAGTCAGCTTTGTGCCGCCGGATGGGGAATTTGAATTGATGAAATACCGTATTACTGAGGGTGTTAATCTTCCATTTCGAGTTCTCCCAACAATTAAGGAACTTGGTAGGACACATATGGAAGTTAATGTTAAGGTGAAGAGTGTCTTTGGTGCAAAAATGTTTGCTCTTGGCGTGGTCATTAAAATTCCTGTTCCAAAACAGACAGCTAAAACTAGTTTTCAAGTGACATCAGGTCGAGCCAAGTACAACGCGTCAATCGATTGCATTGTGTGGAAGATCAGAAAATTTCCTGGACAAACAGAACCAACCATGAGTGCAGAAGTCGAGCTGATTTCTACAATGACCGAAAGGAAGCCTTGGACACGGCCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACAGCATCTGGTTTACGAGTCCGTTTCCTTAAGGTGTGGGAGAAAAGTGGTTACAACACCGTCGAATGGGTTCGTTACATAACTAAAGCTGGATCATACGAGATCCGGTTAAATCAACTCCAAAGTCAAGTGCTCCTTTTAGATATCGCCTTACTCTTTTTGCAACTTGCAAATGAAGTCTTGGGCCCTAGAGTCGGTTTGAACCCAATCAGATTCGGGTCAAGACCGATAAAACTCGGGTCGGTGGTTGTTCTTATCAATGTTCATGATAGTCTTGAGAGTCTCACTAATCATTCAGCCACTTCGGCTCAACCTGCTGTCGATCAGTCTCAGGCATATCTCAACCGTATTCATCCTAATTCTTGTTGGATTATTGACTCTGGCACATCTGCTCATGTTTGTTGTTCAAAGGTGTTTACTTCCATGGTGCCTTACTCTTCTACAATTAGTTTACCTGATAAACAGTCTTTTGAGGATAAGTACACTTTGAAGAAGATTGGCAGTGCTAAACTGTATCAAGGAGTATACTTGCTTGATTTGCCCATGTTGCTGGAAGAAAATACTAGTTATTCAAACACAGAATCAATTATTAATGATTCTTCTGATAATTCTTCTCATCCAACATTAAAACTACATCATATAGCCCCTTATCAACAAGCTTCAGAAGAAGGACCAACTAATGTATCAGTTGATCAACACCATTCTTCAAAAGATTTTGCTACTAGTGTGTCCATTAATCTTGAGCCCTCTAACATACCTTTTGTTGTGGTCCTTCAGTAA 3333 41.16 MGSIEDILGELEKDSYISLLSKLIGEAKFVQNNPPDLVPVEDKIGSHVLDVLLPYSTDNGGPLNIKQVSYVHGRGNLIIEYPGSVPTKVVSFVGSHMDVVPADPDTWEFDPFSLSIDGDKLRGRGTTDCLGHVALLTELLKKIAQTKPKLKYSVVVIFIASEENNSIQGIGVEQLWADGYFDNLKGGPLYWIDTADSQPCIGTGGSLTWSIKTTGKLFHSGMPDKAINALELAMDALKPIQLSFYKDFPAHPKEADYKFTIPSTMKPTQWNYPGGGINQIPGESTIAGDVRLTPFYEMDDVKTKIQGYVDDINAHVENLESRGPVSKYTLPDEGLRGRIDISFGVPLPGIACDLDSIGYKVLYNATKKVIGYVKPYSLTGSLPLVYDLQKEGYDVQNVGYGLTDTYHADNEYCLYSDMSNGYKSLSFSHFSPPPFSSAPYYFGTRSAGSDMPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTHMEVNVKVKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCIVWKIRKFPGQTEPTMSAEVELISTMTERKPWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRLNQLQSQVLLLDIALLFLQLANEVLGPRVGLNPIRFGSRPIKLGSVVVLINVHDSLESLTNHSATSAQPAVDQSQAYLNRIHPNSCWIIDSGTSAHVCCSKVFTSMVPYSSTISLPDKQSFEDKYTLKKIGSAKLYQGVYLLDLPMLLEENTSYSNTESIINDSSDNSSHPTLKLHHIAPYQQASEEGPTNVSVDQHHSSKDFATSVSINLEPSNIPFVVVLQ 1110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13202105 13226318 + CrPI670011_09g011650.1 Cre09g1165 507833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1165 1110 SUPERFAMILY SNARE-like 456 592 IPR011012 -
Cre09g1165 1110 Pfam Peptidase family M20/M25/M40 93 425 IPR002933 GO:0016787(InterPro)
Cre09g1165 1110 SUPERFAMILY Zn-dependent exopeptidases 51 424 - -
Cre09g1165 1110 Gene3D Zn peptidases 10 192 - -
Cre09g1165 1110 Gene3D - 205 320 - -
Cre09g1165 1110 FunFam Acetylornithine deacetylase, putative 10 200 - -
Cre09g1165 1110 Pfam Peptidase dimerisation domain 201 314 IPR011650 -
Cre09g1165 1110 Gene3D Mu homology domain, subdomain B 740 887 - -
Cre09g1165 1110 PANTHER AP COMPLEX SUBUNIT MU 455 887 IPR050431 GO:0006897(PANTHER)|GO:0016192(PANTHER)|GO:0031410(PANTHER)
Cre09g1165 1110 FunFam AP-2 complex subunit mu, putative 454 594 - -
Cre09g1165 1110 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 616 636 IPR018240 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cre09g1165 1110 SUPERFAMILY Bacterial exopeptidase dimerisation domain 205 315 IPR036264 -
Cre09g1165 1110 Gene3D Mu homology domain, subdomain B 625 883 - -
Cre09g1165 1110 CDD AP2_Mu_N 456 594 IPR043532 -
Cre09g1165 1110 CDD AP-2_Mu2_Cterm 625 887 IPR043512 -
Cre09g1165 1110 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 616 887 IPR036168 -
Cre09g1165 1110 Gene3D - 455 595 - -
Cre09g1165 1110 ProSiteProfiles Mu homology domain (MHD) profile. 627 887 IPR028565 -
Cre09g1165 1110 Pfam Adaptor complexes medium subunit family 617 888 IPR028565 -
Cre09g1165 1110 PRINTS Clathrin coat assembly protein signature 465 485 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cre09g1165 1110 PRINTS Clathrin coat assembly protein signature 552 579 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cre09g1165 1110 PRINTS Clathrin coat assembly protein signature 618 646 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cre09g1165 1110 PRINTS Clathrin coat assembly protein signature 807 818 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cre09g1165 1110 PRINTS Clathrin coat assembly protein signature 767 782 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cre09g1165 1110 PRINTS Clathrin coat assembly protein signature 698 725 IPR001392 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cre09g1165 1110 FunFam AP-2 complex subunit mu 740 850 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1165 K11826 - - csv:101220779 854.744
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2725 Cre-Chr5:38118061 Cre09g1165 Cre-Chr9:13202105 7.00E-93 dispersed
Cre09g1162 Cre-Chr9:13088820 Cre09g1165 Cre-Chr9:13202105 6.90E-184 dispersed
Cre09g1163 Cre-Chr9:13132714 Cre09g1165 Cre-Chr9:13202105 1.10E-216 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g662 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0458 . . . . . . . . . . . . . Bma12g00203 . . . . . . . . . . . . . . . . Cla09g01145 Cam09g1204 Cec09g1218 Cco09g1245 . . Cre09g1165 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004704 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 1 1 42