Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1314 ATGAAGCTCATCCCCTTCCTTCCATGGCTGAACCTCCACATGGCCCTCTTCTTCTTCTTCTTCCTTGCTTCTTCTTCACTTCTTCATTCATCCCCTGCCTCTTCACTTCCCCACAATGAAGGACGAGCGCTTATGTCAATCAAGGCCTCGTTTAGCAATGTAGCTAATGTGTTGCTTGACTGGGATGACGATCACAACCACGATTTCTGTTCATGGCGTGGAGTTTTCTGCGACAATGTTAGCCTTTCTGTTGCTGCTTTGAACTTGTCCAACTTGAATCTGGGTGGGGAGATTTCACCATCCATTGGAGATTTGAGAAACTTACAGTCAATTGACTTTCAAGGGAATAAACTGACTGGCCAAATCCCTGATGAGATTGGTAACTGTGGTCTTCTTGTCCATTTGGACTTGTCTGATAATTTGCTCTATGGAGACATCCCCTTCACGGTTTCAAAGCTAAAGCAGCTTGAGTTTTTAAATATGAAGAACAATCAGTTGACCGGTCCGATTCCTTCAACCTTAACCCAGATTCCCAATCTGAAAACTCTTGATCTTGCACGAAACCAGCTTACTGGGGAGATACCTAGATTAATCTATTGGAATGAAGTTCTGCAATATCTTGGATTACGAGGGAACTTTTTGACAGGGTCATTGTCCCCCGATATGTGTCAATTGACTGGCTTGTGGTACTTTGATGTAAGGGGAAATAATCTGACTGGAACGATACCGGATAGCATAGGAAACTGTACCAGTTTTGAAATTCTATCATTACAGGGAAATAGGTTGAGTGGTAAGATTCCTGATGTCATTGGATTGATGCAGGCCCTTGCTGTTCTGGATTTGAGTGAGAATGAGCTTGAAGGACCAATACCGCCAATACTTGGCAACTTGTCCTACACAGGAAAATTGTATCTACATGGAAACAAGTTGACTGGGTCAATTCCTCCTGAGCTGGGCAATATGTCAAAGCTTAGCTACTTGCAACTAAATGATAACCAGTTGGTTGGCACAATTCCTTCTGAACTTGGGAAACTGGATCAGTTGTTTGAATTAAATCTTGCCAATAATTATCTTGAAGGACCCATCCCTCATAACATCAGCTCTTGCACTGCATTGAATCAATTCAATGTGCACGGAAACAATCTTAATGGATCAATCCCTTTGGGTTTCCAAAATCTGGAGAGCTTGACCTATTTGAACCTTTCAGCAAACAACTTCAAAGGCAGGATTCCCATGGAGCTGGGGCGCATAGTAAACCTCGATACATTTGTCTGTCTTTTCAGTTGGCTTAAAGTTTTTGTTTCATCCAGGGATCTATCTTGCAATTACTTCTTGGGTCCTGTTCCTGCTTCTATTGGTGATTTGGAACACCTTCTTAGCCTCAATTTGAGCAATAACCGACTCGTTGGGCCGTTGCCGGCAGAATTTGGGAATCTCCGAAGTGTTCAGACTATTGATATGTCATTCAACAACTTTTCCGGTAGCATACCCATGGAGTTGGGTCAACTGCAAAATATTATCTCCCTCATTTTGAACAACAACCATTTTCAAGGAAAAATACCTGATCAGCTGACTAATTGTTTTAGTCTTGCCAATTTGAACTTGTCATACAACAACTTATCTGGTATCTTACCTCCCATGAAAAATTTCTCTCGATTCGAACCAAATAGCTTTATCGGGAATCCGCTGCTGTGTGGAAACTGGCTGGGGTCGATCTGTGGGCCTTATATGGAAAAATCTCGAGCAATGTTGTCTCGGACAGTAGTTGTTTGTATGACATTTGGATTCATAGTATTGTTGTCGATGGTTATAATTGCCGTTTACAAGTCGAATCCCTCGAAGCAATTGATGAAGGGTTCTAGCAAGACCGGGCAAGGTCCTCCAAATCTTGTGGTACTTCATATGGATATGGCTATTCACACCTTTGAGGACATTATGAGAATGACTGAGAATCTAAGCGAGAAGTACATTATTGGTTACGGAGCTTCTAGCACTGTGTACAAATGTTTACTGAAAAATTCCCGACCTATTGCAATTAAGCGACTTTATAATCACTACGCACACAATTTACGGGAGTTTGAGACCGAACTCGAAACCATTGGTAGTATCAGACATAGAAATCTTGTTAGCCTTCATGGTTATTCATTATCTCCCTGTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGTTCACTCTGGGATCTGCTTCATGGGACAGGTAAGAAGGTTAAACTGGATTGGGAAGCACGTCTGAAGATTGCGGTTGGAGCTGCGCAAGGGCTTGCATATCTTCACCATGATTGTAACCCCCGAATCATTCACCGGGATGTCAAGTCTTCAAATATTCTACTGGATGAAAATTTTGAGGCCCATCTTTCTGATTTCGGGATTGCCAAATGCATCCCAACTGCCAAAACACACGCGTCGACTTATGTGCTTGGAACAATTGGCTACATTGATCCGGAGTATGCCCGGACCTCCCGGCTTAACGAGAAGTCTGATGTTTATAGCTTTGGCATTGTTCTTCTTGAACTACTGACCGGGAAGAAAGCTGTGGATGATGAGTCCAATTTGCATCAGCTGATATTGTCCAAGACTGATAACAATACCGTGATGGAAGCTGTTGATCCTGAGGTTTCAGTCACCTGCATTGATTTAGCCCATGTTCGAAAAACGTTCCAGCTTGCTCTCCTCTGCACAAAACACAATCCCTCCGAACGGCCAACCATGCACGAAGTTGCACGAGTATTGATCTCCCTCCAGCCACCACCACCACCTACTGTGAAACAAACTTCATTCCCCACGAAAACATTGGATTACGCACAGTTTGTGATCGAAAAGGGTCAGAATCGAAACTTGAAAGGGCAGGAGGAGCAGCAGAAGTCAGATGTGAATACTTCAGATGCTCGGTGGTTTGTTCGGTTTGGGGAAGTGATGTCTCAACAACACAGTTTGAATCAATAA 2967 43.04 MKLIPFLPWLNLHMALFFFFFLASSSLLHSSPASSLPHNEGRALMSIKASFSNVANVLLDWDDDHNHDFCSWRGVFCDNVSLSVAALNLSNLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGLLVHLDLSDNLLYGDIPFTVSKLKQLEFLNMKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNFLTGSLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILSLQGNRLSGKIPDVIGLMQALAVLDLSENELEGPIPPILGNLSYTGKLYLHGNKLTGSIPPELGNMSKLSYLQLNDNQLVGTIPSELGKLDQLFELNLANNYLEGPIPHNISSCTALNQFNVHGNNLNGSIPLGFQNLESLTYLNLSANNFKGRIPMELGRIVNLDTFVCLFSWLKVFVSSRDLSCNYFLGPVPASIGDLEHLLSLNLSNNRLVGPLPAEFGNLRSVQTIDMSFNNFSGSIPMELGQLQNIISLILNNNHFQGKIPDQLTNCFSLANLNLSYNNLSGILPPMKNFSRFEPNSFIGNPLLCGNWLGSICGPYMEKSRAMLSRTVVVCMTFGFIVLLSMVIIAVYKSNPSKQLMKGSSKTGQGPPNLVVLHMDMAIHTFEDIMRMTENLSEKYIIGYGASSTVYKCLLKNSRPIAIKRLYNHYAHNLREFETELETIGSIRHRNLVSLHGYSLSPCGNLLFYDYMENGSLWDLLHGTGKKVKLDWEARLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFEAHLSDFGIAKCIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDDESNLHQLILSKTDNNTVMEAVDPEVSVTCIDLAHVRKTFQLALLCTKHNPSERPTMHEVARVLISLQPPPPPTVKQTSFPTKTLDYAQFVIEKGQNRNLKGQEEQQKSDVNTSDARWFVRFGEVMSQQHSLNQ 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19456941 19462705 - CrPI670011_09g013140.1 Cre09g1314 507982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1314 988 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 321 918 IPR051564 GO:0016020(PANTHER)
Cre09g1314 988 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 37 201 - -
Cre09g1314 988 Pfam Leucine rich repeat 438 492 IPR001611 GO:0005515(InterPro)
Cre09g1314 988 Gene3D Transferase(Phosphotransferase) domain 1 728 925 - -
Cre09g1314 988 SUPERFAMILY Protein kinase-like (PK-like) 629 919 IPR011009 -
Cre09g1314 988 Gene3D Ribonuclease Inhibitor 37 200 IPR032675 -
Cre09g1314 988 Gene3D Ribonuclease Inhibitor 274 575 IPR032675 -
Cre09g1314 988 SMART serkin_6 652 919 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g1314 988 Pfam Leucine rich repeat N-terminal domain 38 78 IPR013210 -
Cre09g1314 988 CDD STKc_IRAK 658 921 - -
Cre09g1314 988 Gene3D Phosphorylase Kinase; domain 1 618 727 - -
Cre09g1314 988 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 288 576 - -
Cre09g1314 988 SMART LRR_typ_2 455 478 IPR003591 -
Cre09g1314 988 SMART LRR_typ_2 177 201 IPR003591 -
Cre09g1314 988 SMART LRR_typ_2 393 417 IPR003591 -
Cre09g1314 988 SMART LRR_typ_2 105 129 IPR003591 -
Cre09g1314 988 SMART LRR_typ_2 273 297 IPR003591 -
Cre09g1314 988 SMART LRR_typ_2 321 345 IPR003591 -
Cre09g1314 988 SMART LRR_typ_2 153 176 IPR003591 -
Cre09g1314 988 SMART LRR_typ_2 503 527 IPR003591 -
Cre09g1314 988 SMART LRR_typ_2 225 249 IPR003591 -
Cre09g1314 988 Gene3D Ribonuclease Inhibitor 201 273 IPR032675 -
Cre09g1314 988 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 728 928 - -
Cre09g1314 988 ProSiteProfiles Protein kinase domain profile. 652 921 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g1314 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 773 785 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g1314 988 SUPERFAMILY RNI-like 87 423 - -
Cre09g1314 988 Pfam Protein kinase domain 655 915 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g1314 988 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 202 274 - -
Cre09g1314 988 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 623 727 - -
Cre09g1314 988 ProSiteProfiles Leucine-rich repeat profile. 179 201 IPR001611 GO:0005515(InterPro)
Cre09g1314 988 Pfam Leucine Rich Repeat 276 297 IPR001611 GO:0005515(InterPro)
Cre09g1314 988 Pfam Leucine Rich Repeat 323 345 IPR001611 GO:0005515(InterPro)
Cre09g1314 988 Pfam Leucine Rich Repeat 302 321 IPR001611 GO:0005515(InterPro)
Cre09g1314 988 Pfam Leucine Rich Repeat 107 129 IPR001611 GO:0005515(InterPro)
Cre09g1314 988 Pfam Leucine Rich Repeat 155 175 IPR001611 GO:0005515(InterPro)
Cre09g1314 988 Pfam Leucine Rich Repeat 253 271 IPR001611 GO:0005515(InterPro)
Cre09g1314 988 Pfam Leucine Rich Repeat 228 249 IPR001611 GO:0005515(InterPro)
Cre09g1314 988 Pfam Leucine Rich Repeat 395 415 IPR001611 GO:0005515(InterPro)
Cre09g1314 988 Pfam Leucine Rich Repeat 179 198 IPR001611 GO:0005515(InterPro)
Cre09g1314 988 Pfam Leucine Rich Repeat 529 546 IPR001611 GO:0005515(InterPro)
Cre09g1314 988 Pfam Leucine Rich Repeat 348 369 IPR001611 GO:0005515(InterPro)
Cre09g1314 988 SUPERFAMILY L domain-like 438 565 - -
Cre09g1314 988 ProSitePatterns Protein kinases ATP-binding region signature. 658 680 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1743 Cre-Chr5:29154824 Cre09g1314 Cre-Chr9:19456941 4.90E-18 dispersed
Cre09g1314 Cre-Chr9:19456941 Cre11g2123 Cre-Chr11:32932392 4.30E-69 dispersed
Cre09g1314 Cre-Chr9:19456941 Cre06g1526 Cre-Chr6:10049482 7.50E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64408 PF00069 Pkinase 5.70E-42 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1314 K20718 - csv:101213139 1776.91