Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g1328 | ATGGCTTCTCATTCCCCTAACCTCGAGTGTCGGATGTACGAAGCAAAGTACCCCGAGGTCGACATGGCCGTCATGATCCAGGTCAAAAACATCGCCGACATGGGCGCTTACGTCTCCCTTCTTGAGTACAACAACATTGAGGGTATGATTCTATTCTCCGAGCTCTCTCGCCGTCGAATTCGTAGTGTCAGCAGCTTAATTAGGGTCGGTCGAATCGAGCCCGTCATGGTCCTCAGGGTCGATAAGGAGAAGGGTTATATTGATTTGAGTAAGAGAAGGGTGTCTGAGGAGGATATTCAGGCCTGTGAGGAGAGGTATAACAAGAGCAAGCTTGTTCACTCTATAATGCGCCATGTCGCTGAGACTATGAACATTGATTTGGAGGACTTGTATATCCATGTTGGCTGGCCTTTGTACCGGAAATATGGTCATGCTTTTGAGGCATTCAAGATCATTGTAACTGACCCTGACTCGGTGTTAAATTCTCTCACCCGTGAAGTAAAGGAAGCTGGTCCTGATGGACAGGAGGTAACTAAGATAGTTCCTGCAATGTCTGAGGATGTAAAAGATGCACTAATAAAGAATATTAGAAGAAGAATGACTCCCCAACCCTTGAAGGTCCGAGCTGATATTGAGATGAAGTGTTTCCAATTTGATGGCGTTCTTCACATTAAGGAAGCAATGCGTAAAGCTGAAGCTGCTGGAAACGATGATTGTCCTGTTAAAATTAAGTTGGTTGCTCCTCCCCTCTATGTCCTTACTACTCAGACACTTGACAAGGAGCAAGGAATCACTGTTCTTGAAAAAGCAATCATGGCTTGCACCGAGGCAATTGAGCATCACAAGGGAAAGCTTGTGGTGAAGGAGACACCCAGAGCGGTGAGTGAAAGAGATGACAAATTGCTTGCTGAGCACATGGCGAAGCTACGACAAGACAATGAAGAAATCAGCGGAGATGAGGATAGCGAGGAAGAGGAAGACACGGGAATGGGAGAAGTCGATGTTGAGAATGCAGGTTCTGGGATCACTGACATTGTAGCATCTTCAAAGGACTCTTTCAGCTCTGGTCCCTCTCTCATTCTCGTGATCATTTTGTCGGGTTTGCAGGTAGTTGTTAGCTTTGTTCGTGTTTGA | 1134 | 46.12 | MASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIRVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMNIDLEDLYIHVGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEAGPDGQEVTKIVPAMSEDVKDALIKNIRRRMTPQPLKVRADIEMKCFQFDGVLHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLEKAIMACTEAIEHHKGKLVVKETPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENAGSGITDIVASSKDSFSSGPSLILVIILSGLQVVVSFVRV | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 19988360 | 19992508 | + | CrPI670011_09g013280.1 | Cre09g1328 | 507996 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g1328 | 377 | SUPERFAMILY | Nucleic acid-binding proteins | 15 | 97 | IPR012340 | - | |
Cre09g1328 | 377 | Pfam | S1 RNA binding domain | 18 | 92 | IPR003029 | GO:0003676(InterPro) | |
Cre09g1328 | 377 | Gene3D | Translation initiation factor 2; subunit 1; domain 2 | 95 | 172 | IPR024054 | - | |
Cre09g1328 | 377 | Gene3D | EIF_2_alpha | 205 | 327 | IPR024055 | - | |
Cre09g1328 | 377 | ProSiteProfiles | S1 domain profile. | 21 | 92 | IPR003029 | GO:0003676(InterPro) | |
Cre09g1328 | 377 | MobiDBLite | consensus disorder prediction | 309 | 336 | - | - | |
Cre09g1328 | 377 | FunFam | Eukaryotic translation initiation factor 2 subunit alpha | 7 | 94 | - | - | |
Cre09g1328 | 377 | SMART | S1_6 | 19 | 92 | IPR003029 | GO:0003676(InterPro) | |
Cre09g1328 | 377 | MobiDBLite | consensus disorder prediction | 316 | 332 | - | - | |
Cre09g1328 | 377 | FunFam | Eukaryotic translation initiation factor 2 subunit alpha | 95 | 199 | - | - | |
Cre09g1328 | 377 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 | 6 | 333 | IPR011488 | GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005850(PANTHER)|GO:0006413(PANTHER)|GO:0033290(PANTHER)|GO:0043022(PANTHER) | |
Cre09g1328 | 377 | FunFam | Eukaryotic translation initiation factor 2 subunit 1 | 205 | 327 | - | - | |
Cre09g1328 | 377 | Coils | Coil | 306 | 326 | - | - | |
Cre09g1328 | 377 | SUPERFAMILY | eIF2alpha middle domain-like | 94 | 199 | IPR024054 | - | |
Cre09g1328 | 377 | Pfam | Eukaryotic translation initiation factor 2 alpha subunit | 130 | 260 | IPR011488 | GO:0003723(InterPro)|GO:0003743(InterPro) | |
Cre09g1328 | 377 | SUPERFAMILY | eIF-2-alpha, C-terminal domain | 203 | 319 | IPR024055 | - | |
Cre09g1328 | 377 | CDD | S1_IF2_alpha | 18 | 93 | IPR044126 | GO:0003723(InterPro) | |
Cre09g1328 | 377 | Gene3D | - | 6 | 94 | IPR012340 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g0232 | Cre-Chr8:5968551 | Cre09g1328 | Cre-Chr9:19988360 | 1.30E-06 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g1328 | K03237 | - | csv:101209681 | 632.098 |