Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1461 GGTTTCTGCTGTGCTACTCATGAGCTTTGCTCAACTTCGCTTTCTTGTTTGAAAATCAGAGAATTTTCTGTCGGGATCAGCAATACACCAAGTATTGTGAGCCATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCAGTCTCCGATGGTGGCTTCTGGGACTCCTGCTATTACAATTCCCCCAACTCAGCCACCATCCAGTTTCTCTAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTTCCCCTTGCTCGAATCAAGAAAATTATGAAAGCAGACGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCGAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTTGGAATCACGAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACCGCTCAACACCCCCGACCGTCGATGCCTTTCATGCCATGGCCGCATACTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG 861 46.57 GFCCATHELCSTSLSCLKIREFSVGISNTPSIVSHGSIRAFSASATITAACRQSPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQHPRPSMPFMPWPHTQPQQQQQTQQQSDA 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 28440272 28442239 + CrPI670011_09g014610.1 Cre09g1461 508129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1461 286 MobiDBLite consensus disorder prediction 270 286 - -
Cre09g1461 286 Pfam Core histone H2A/H2B/H3/H4 76 186 IPR007125 GO:0003677(InterPro)
Cre09g1461 286 Gene3D Histone, subunit A 84 201 IPR009072 GO:0046982(InterPro)
Cre09g1461 286 SUPERFAMILY Histone-fold 79 195 IPR009072 GO:0046982(InterPro)
Cre09g1461 286 FunFam Nuclear transcription factor Y subunit gamma 89 201 - -
Cre09g1461 286 MobiDBLite consensus disorder prediction 256 286 - -
Cre09g1461 286 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 103 271 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1461 K08066 - - csv:101213813 377.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1955 Cre-Chr3:36617104 Cre09g1461 Cre-Chr9:28440272 5.00E-29 dispersed
Cre06g2647 Cre-Chr6:34089317 Cre09g1461 Cre-Chr9:28440272 1.10E-52 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre06g2647 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 9.8e-89 323.6
Cre09g1461 . 102 245 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.3e-53 206.1
Cre09g1461 . 102 200 CCAAT-HAP5 Transcription Factor Family AT1G08970 87.9 4.5e-46 181.8
Cre06g2647 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 8.0e-43 171.0
Cre09g1461 . 102 244 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.5 1.2e-51 200.3
Cre06g2647 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.0e-51 199.5
Cre06g2647 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 4.0e-38 155.2
Cre06g2647 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 8.0e-81 297.4
Cre09g1461 . 102 253 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.1e-49 193.0
Cre09g1461 . 66 233 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.9e-65 245.4
Cre06g2647 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.5e-50 194.9
Cre11g1741 . 1 282 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.3 5.4e-60 228.4
Cre08g0946 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.7 2.2e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54374 PF00125 Histone 7.10E-18 CL0012 Cre TF