Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1461 GGTTTCTGCTGTGCTACTCATGAGCTTTGCTCAACTTCGCTTTCTTGTTTGAAAATCAGAGAATTTTCTGTCGGGATCAGCAATACACCAAGTATTGTGAGCCATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCAGTCTCCGATGGTGGCTTCTGGGACTCCTGCTATTACAATTCCCCCAACTCAGCCACCATCCAGTTTCTCTAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTTCCCCTTGCTCGAATCAAGAAAATTATGAAAGCAGACGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCGAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTTGGAATCACGAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACCGCTCAACACCCCCGACCGTCGATGCCTTTCATGCCATGGCCGCATACTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG 861 46.57 GFCCATHELCSTSLSCLKIREFSVGISNTPSIVSHGSIRAFSASATITAACRQSPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQHPRPSMPFMPWPHTQPQQQQQTQQQSDA 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 28440272 28442239 + CrPI670011_09g014610.1 Cre09g1461 508129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1461 286 MobiDBLite consensus disorder prediction 270 286 - -
Cre09g1461 286 Pfam Core histone H2A/H2B/H3/H4 76 186 IPR007125 GO:0003677(InterPro)
Cre09g1461 286 Gene3D Histone, subunit A 84 201 IPR009072 GO:0046982(InterPro)
Cre09g1461 286 SUPERFAMILY Histone-fold 79 195 IPR009072 GO:0046982(InterPro)
Cre09g1461 286 FunFam Nuclear transcription factor Y subunit gamma 89 201 - -
Cre09g1461 286 MobiDBLite consensus disorder prediction 256 286 - -
Cre09g1461 286 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 103 271 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1955 Cre-Chr3:36617104 Cre09g1461 Cre-Chr9:28440272 5.00E-29 dispersed
Cre06g2647 Cre-Chr6:34089317 Cre09g1461 Cre-Chr9:28440272 1.10E-52 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54374 PF00125 Histone 7.10E-18 CL0012 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1461 K08066 - csv:101213813 377.867