Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1478 ATGGCAGATGGTGAAGATATTCAACCTCTTGTCTGTGATAATGGAACTGGGATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCCGTATTTCCTAGTATCGTTGGTAGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCATATGTTGGTGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCATCCGATACTTCTTACTGAAGCACCACTCAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTCGACGTACCTGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACGGTGCCTATATACGAGGGCTTTTCACTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTGACTGATGCTTTGATGAAAATTCTTACTGAAAGAGGTTACATGTTCACGACAACGGCAGAGCGGGAAATTGTCCGTGATGTTAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCGGCCATTGAGAAAAGCTATGAACTACCTGATGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGATGCCCAGAAGTACTTTTCCAGCCATCTCTGATTGGCATGGAATCGCCTGGAATCCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGTAACATTGTCCTCAGTGGTGGTACGACGATGTTCCCCGGTATTGCTGATCGGATGAGCAAAGAAATCACAGCCCTCGCTCCGAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACGAAGGCTGAATACGACGAGTCGGGTCCAGCTATAGTTCACAGGAAATGCTTCTGA 1134 46.91 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29159134 29161795 + CrPI670011_09g014780.1 Cre09g1478 508146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1478 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cre09g1478 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cre09g1478 377 Gene3D - 10 371 - -
Cre09g1478 377 SMART actin_3 7 377 IPR004000 -
Cre09g1478 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cre09g1478 377 PANTHER ACTIN 8 369 IPR004000 -
Cre09g1478 377 Pfam Actin 5 377 IPR004000 -
Cre09g1478 377 FunFam Major actin 261 340 - -
Cre09g1478 377 FunFam Actin, muscle 182 273 - -
Cre09g1478 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cre09g1478 377 Gene3D - 140 340 - -
Cre09g1478 377 PRINTS Actin signature 51 62 IPR004000 -
Cre09g1478 377 PRINTS Actin signature 238 254 IPR004000 -
Cre09g1478 377 PRINTS Actin signature 63 85 IPR004000 -
Cre09g1478 377 PRINTS Actin signature 142 161 IPR004000 -
Cre09g1478 377 PRINTS Actin signature 117 130 IPR004000 -
Cre09g1478 377 PRINTS Actin signature 28 37 IPR004000 -
Cre09g1478 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cre09g1478 377 FunFam Actin, alpha skeletal muscle 3 175 - -
Cre09g1478 377 FunFam Putative actin-related protein 5 341 369 - -
Cre09g1478 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cre09g1478 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2360 Cre-Chr6:31528909 Cre09g1478 Cre-Chr9:29159134 4.00E-75 dispersed
Cre09g0387 Cre-Chr9:3807805 Cre09g1478 Cre-Chr9:29159134 3.70E-55 dispersed
Cre09g1478 Cre-Chr9:29159134 Cre10g1871 Cre-Chr10:33285010 1.10E-211 dispersed
Cre09g1478 Cre-Chr9:29159134 Cre02g0410 Cre-Chr2:1265488 1.70E-212 transposed
Cre09g1478 Cre-Chr9:29159134 Cre04g1194 Cre-Chr4:30598851 1.70E-212 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1478 K10355 - csv:101214459 755.362