Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1478 ATGGCAGATGGTGAAGATATTCAACCTCTTGTCTGTGATAATGGAACTGGGATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCCGTATTTCCTAGTATCGTTGGTAGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCATATGTTGGTGATGAAGCTCAGTCAAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCATCCGATACTTCTTACTGAAGCACCACTCAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTCGACGTACCTGCTATGTATGTTGCAATCCAGGCCGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACGGTGCCTATATACGAGGGCTTTTCACTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTGACTGATGCTTTGATGAAAATTCTTACTGAAAGAGGTTACATGTTCACGACAACGGCAGAGCGGGAAATTGTCCGTGATGTTAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCGGCCATTGAGAAAAGCTATGAACTACCTGATGGGCAGGTGATTACGATTGGAGCTGAGAGATTCCGATGCCCAGAAGTACTTTTCCAGCCATCTCTGATTGGCATGGAATCGCCTGGAATCCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGTAACATTGTCCTCAGTGGTGGTACGACGATGTTCCCCGGTATTGCTGATCGGATGAGCAAAGAAATCACAGCCCTCGCTCCGAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACGAAGGCTGAATACGACGAGTCGGGTCCAGCTATAGTTCACAGGAAATGCTTCTGA 1134 46.91 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29159134 29161795 + CrPI670011_09g014780.1 Cre09g1478 508146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1478 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cre09g1478 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cre09g1478 377 Gene3D - 10 371 - -
Cre09g1478 377 SMART actin_3 7 377 IPR004000 -
Cre09g1478 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cre09g1478 377 PANTHER ACTIN 8 369 IPR004000 -
Cre09g1478 377 Pfam Actin 5 377 IPR004000 -
Cre09g1478 377 FunFam Major actin 261 340 - -
Cre09g1478 377 FunFam Actin, muscle 182 273 - -
Cre09g1478 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cre09g1478 377 Gene3D - 140 340 - -
Cre09g1478 377 PRINTS Actin signature 51 62 IPR004000 -
Cre09g1478 377 PRINTS Actin signature 238 254 IPR004000 -
Cre09g1478 377 PRINTS Actin signature 63 85 IPR004000 -
Cre09g1478 377 PRINTS Actin signature 142 161 IPR004000 -
Cre09g1478 377 PRINTS Actin signature 117 130 IPR004000 -
Cre09g1478 377 PRINTS Actin signature 28 37 IPR004000 -
Cre09g1478 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cre09g1478 377 FunFam Actin, alpha skeletal muscle 3 175 - -
Cre09g1478 377 FunFam Putative actin-related protein 5 341 369 - -
Cre09g1478 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cre09g1478 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1478 K10355 - - csv:101214459 755.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2360 Cre-Chr6:31528909 Cre09g1478 Cre-Chr9:29159134 4.00E-75 dispersed
Cre09g0387 Cre-Chr9:3807805 Cre09g1478 Cre-Chr9:29159134 3.70E-55 dispersed
Cre09g1478 Cre-Chr9:29159134 Cre10g1871 Cre-Chr10:33285010 1.10E-211 dispersed
Cre09g1478 Cre-Chr9:29159134 Cre02g0410 Cre-Chr2:1265488 1.70E-212 transposed
Cre09g1478 Cre-Chr9:29159134 Cre04g1194 Cre-Chr4:30598851 1.70E-212 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 8.3e-215 743.0
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 8.3e-215 743.0
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.7e-213 738.0
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.7e-213 738.0
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.3e-212 735.7
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 2.3e-212 734.9
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT2G37620 96.1 3.3e-203 704.5
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT2G37620 96.1 1.3e-186 649.4
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.4e-214 741.5
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 7.0e-214 740.0
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.8e-213 736.5
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 9.5e-211 729.6
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.6e-210 727.6
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.6e-210 727.6
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT5G59370 96.7 2.5e-203 704.9
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT5G59370 97.0 1.6e-186 649.0
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.1e-214 742.7
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 3.2e-214 741.1
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.5e-213 737.6
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 4.3e-211 730.7
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT3G46520 96.9 1.1e-203 706.1
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT3G46520 96.7 4.8e-186 647.5
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.7e-215 744.2
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 4.1e-214 740.7
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 2.0e-213 738.4
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.0e-212 736.1
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.0e-212 736.1
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 3.0e-212 734.6
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT3G12110 97.2 7.8e-205 709.9
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT3G12110 96.4 5.6e-187 650.6
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 3.1e-209 724.5
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.2e-209 723.8
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.2e-209 723.8
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 2.0e-208 721.8
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.0e-208 721.8
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.3e-207 719.2
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT3G18780 93.1 4.9e-199 690.6
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT3G18780 92.5 4.2e-182 634.4
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 1.1e-209 726.1
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.8e-209 725.3
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.8e-209 725.3
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.8e-209 723.4
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.4e-208 720.7
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.4e-208 720.7
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT1G49240 93.1 4.9e-199 690.6
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT1G49240 92.5 4.2e-182 634.4
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.9e-217 749.6
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.9e-217 749.6
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.2e-214 741.1
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 7.0e-214 740.0
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.0e-213 738.4
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.9e-212 734.2
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT5G09810 96.1 5.6e-203 703.7
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT5G09810 95.8 1.1e-185 646.4
Cre11g0696 . 1 131 Cytoskeleton Gene Families AT2G19760 77.9 3.8e-58 221.1
Cre11g0695 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 9.5e-57 216.5
Cre09g0023 . 249 379 Cytoskeleton Gene Families AT2G19760 72.5 4.0e-55 211.1
Cre07g1699 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 2.0e-54 208.8
Cre11g1922 . 305 435 Cytoskeleton Gene Families AT2G19760 73.3 3.4e-54 208.0
Cre11g0696 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 5.0e-58 220.7
Cre11g0695 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.6e-56 215.7
Cre09g0023 . 249 379 Cytoskeleton Gene Families AT4G29350 73.3 1.5e-54 209.1
Cre07g1699 . 1 131 Cytoskeleton Gene Families AT4G29350 71.8 2.2e-53 205.3
Cre11g1922 . 305 435 Cytoskeleton Gene Families AT4G29350 71.0 7.0e-52 200.3
Cre11g0696 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 6.2e-38 153.7
Cre11g0695 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.6e-64 242.3
Cre09g0023 . 249 379 Cytoskeleton Gene Families AT4G29340 73.9 3.3e-57 218.0
Cre11g1922 . 305 435 Cytoskeleton Gene Families AT4G29340 73.1 1.2e-54 209.5
Cre11g0696 . 1 131 Cytoskeleton Gene Families AT4G29340 70.1 3.4e-54 208.0
Cre07g1699 . 1 131 Cytoskeleton Gene Families AT4G29340 67.9 5.5e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276