Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g1509 | ATGAAAAAACAGTGGTTGTCTCTCTTTCTCTACAAATCCCCTCAGCCGCTGACCATTGCGACGCCGCCGCCTTCACCGTCATTCATGAGCCACAGTCCGACATCGTGCGTAGGGACACAGTCACTGATTGTCGCCACCTCTATTTGCTTGACCGTCTGCTCATCGTTTCTGGTCGTCGCAGCTATTTTGTCATTTTTGGACCAACCTCTTTATCTCCGTCACGCACCCGGGCGTCATTTTGGTCGTCGTTTCCATCCACCACCGGAAGCCACCATTTGCTCGCTAGAAAGTTGGTTGGGTCAGTTTATAAGGGATTTTAAGCGTTATGGACCTTCGACCTTCGACGGCTGGTCAGAGAAAGCTACCGCAACTGAGCAATGGATTGCAGAGCTGGAGTCATTGTTTGAATACCTAAATTGCGAGGACGATTTTAAGGCGACACACTCACGTTGGGAGGTTGGCGCCTCATCTGGATTTAAAAGAAAGTCTCCCCCGGCTCCGTCAGATCAAACTTCCAAGGCCCATCGTCTGGCCTCGGGGCAAGCTACCACCCTCCCATTGTGGGGCTCGTGCAACAAGCGTCACTCGGGGCAGTGCTGGCTAGGCCAGAGCATTTGCTTCAAGTGTGGAAAGGAAGGTCACTTTGTAAGGATGTGCCAAAATAAAAGGGAGGCCAGCGCAGACAAGCCGACTCCGAAGGCCCTACCAGAAGCTACTCAAGGAGGGAAACAAAAGGCACGCGTCTTTGCACTGAAGAAGGAGGAGGCTGAGGATACGAACGCAATGGTTACAGCGCCTTATTATCAAATGATCTGTGGAGAGATGAGAAGCAATGAAATGGGGAGAGCAACGTTGATGTTTTCAGCGTTTTCTCCTTTCCTGCGCTTAATTTTGGCTATGGCTTTCGTTTTACGGGTGTCTGCAAATGGGGAAGGTGATGCCCTAAATGCCTTCAAGTTGAGTTTGGTTGACCCCAACAATGTCTTGCAAAGTTGGAATACCATTCTTATGAATCCTTGCACATGGTTTCATGTTACATGTGATGAAAAAGAAAGTGTTATACGTGTTGATCTTGGTAATGCCAATCTGTCTGGAAAACTGGTTCCACAGCTTGATCAACTCACAAACTTGCGGTACTTGGAACTCTACAGCAATAATATCAGCGGAACAATTCCAGAAAGATTTGGAAATTTGAAAAACTTGGAGAGCTTGGATCTTTATTCTAACAGTTTAACTGGTCCCATACCTGACACACTGGGCAAACTTACAAAACTAAGTACCTTGCGTCTGAACAACAATAGCTTATCAGGAACCATTCCAATGTCTTTAACCACTGTTCCACTTCAACTTCTGGATCTTTCAAATAACCTTCTAACAGGAGACATTCCTGTCAATGGTTCGTTCTCGCTTTTCACACCAATCAGTTTTGCCAATAATCCTCTTCACATTTCTCCCTCTGCTCCTCCTCCGCCAACGAGAGATATACCACGAACATCTTCAGGTGATGGGGCTAATGGAGTCATTGTTGGAGCAATTGTTGCTGCTGCTGCTTTGCTGGTTGTTGTGCCTGCTACTGCACTTAATCTTTGGCAACGAAAAACTCAACAGGACCACTTCTTTGATGTAGCTGCTGAAGAAGATCCTGAAATTAACCTGGGCCAGCTCAAAAAATATTCTCTGCGCGAGCTGCAAGTTGCCACTGATTATTTTAGCCAACAGAACATTTTGGGCAAAGGTGGATTTGGCAAGGTCTATAAAGGTCGTTTGGCTGATGGTTCTCTTGTGGCTGTAAAACGATTGAAGGAGCAGCCTGCTGAGGTTGGAGAGCTTCAATTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTCCATCGTAATCTACTCCGTCTAAATGGATTTTGCATATCACCAACTGAACGATTGCTTGTCTATCCTTATATGGCTAATGGAAGTCTAGCATCATGTTTAAGAGAGCGTAAGCAATGCCAGCCACCACTCAACTGGGAAATACGTAAACGAGTTGCTATAGGGGCTGCACAGGGACTTGAATATTTACATAATCATTGTGATCCTAAAATTATTCACCGTGATGTGAAAGCTGCAAATATATTACTAGATGATGAATTTGAGGCTGTTGTTGGAGATTTTGGATTGGCTAAACTCATGAACTACAAGGATACTCATGTCACAACTGCTGTTCGTGGAACAATTGGGCATATAGCGCCAGAGTACCTCTCGTCTGGAAAGTCTTCTGAAAAATCTGATGTTTTTGGTTATGGAGTAATGCTTCTTGAACTCGTAACTGGACAGAAAGCCTTTGATCTTGCTCGGTTAGCAAAAGATGATGACATCATGTTGCTTGATTGGATTTTTCTCAGTTCAATTAAAGAAATGGATGATATGTGTGATAAGCCTTCCTGGCAATATTCTATTGAAGTAACAAACTACCCAAAAGCTCTGCTGAGAGGCCCCAAACGATCCTTCCCAGAATGTAGTGTCAATGAGATTGTAGTATCTCTCATTCTTGAAGAGTTGTTTTGCAATTTCTCCAACGAGCTTACTTTCAATTGGTCCTCTTGTAATTCCTCAGTATCTCTGCTAGAGAGTATTACTGTTATTCAGTACAATGTAAAAGGACTTCTGAATGATAAGAAACTGGAAACGTTGGTCGATCCCAATCTCGGAGGCAATTACGTAGAGGAAGAACTGGAGCAGGTAATTCAAGTTGCACTGCTTTGCACGCAAAGCTCCCCTGTGGAGCGACCAAAGATGTCGGAGGTGTTGCAAATGCTGGAAGGAGATGGTTTGGCTGAAAGATGGGAAGAATGGCAGAAAGAAGAGAGCTCACGCCGAAACTTCAATAATATGGTTCATTCTTCCCACCACCGGAGTAGAACTCCCCAGTTTATTGATTCCACTTCTCATATTGCTCCTGATGTGTTGTCTGGTCCAAGATAG | 2958 | 44.79 | MKKQWLSLFLYKSPQPLTIATPPPSPSFMSHSPTSCVGTQSLIVATSICLTVCSSFLVVAAILSFLDQPLYLRHAPGRHFGRRFHPPPEATICSLESWLGQFIRDFKRYGPSTFDGWSEKATATEQWIAELESLFEYLNCEDDFKATHSRWEVGASSGFKRKSPPAPSDQTSKAHRLASGQATTLPLWGSCNKRHSGQCWLGQSICFKCGKEGHFVRMCQNKREASADKPTPKALPEATQGGKQKARVFALKKEEAEDTNAMVTAPYYQMICGEMRSNEMGRATLMFSAFSPFLRLILAMAFVLRVSANGEGDALNAFKLSLVDPNNVLQSWNTILMNPCTWFHVTCDEKESVIRVDLGNANLSGKLVPQLDQLTNLRYLELYSNNISGTIPERFGNLKNLESLDLYSNSLTGPIPDTLGKLTKLSTLRLNNNSLSGTIPMSLTTVPLQLLDLSNNLLTGDIPVNGSFSLFTPISFANNPLHISPSAPPPPTRDIPRTSSGDGANGVIVGAIVAAAALLVVVPATALNLWQRKTQQDHFFDVAAEEDPEINLGQLKKYSLRELQVATDYFSQQNILGKGGFGKVYKGRLADGSLVAVKRLKEQPAEVGELQFQTEVEMISMAVHRNLLRLNGFCISPTERLLVYPYMANGSLASCLRERKQCQPPLNWEIRKRVAIGAAQGLEYLHNHCDPKIIHRDVKAANILLDDEFEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSSGKSSEKSDVFGYGVMLLELVTGQKAFDLARLAKDDDIMLLDWIFLSSIKEMDDMCDKPSWQYSIEVTNYPKALLRGPKRSFPECSVNEIVVSLILEELFCNFSNELTFNWSSCNSSVSLLESITVIQYNVKGLLNDKKLETLVDPNLGGNYVEEELEQVIQVALLCTQSSPVERPKMSEVLQMLEGDGLAERWEEWQKEESSRRNFNNMVHSSHHRSRTPQFIDSTSHIAPDVLSGPR | 985 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 30392926 | 30426900 | - | CrPI670011_09g015090.1 | Cre09g1509 | 508177 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g1509 | 985 | SMART | c2hcfinal6 | 205 | 221 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Cre09g1509 | 985 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 693 | 705 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre09g1509 | 985 | Gene3D | Phosphorylase Kinase; domain 1 | 539 | 646 | - | - | |
Cre09g1509 | 985 | Gene3D | - | 202 | 248 | - | - | |
Cre09g1509 | 985 | Pfam | Protein kinase domain | 571 | 783 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre09g1509 | 985 | MobiDBLite | consensus disorder prediction | 953 | 975 | - | - | |
Cre09g1509 | 985 | SMART | serkin_6 | 570 | 931 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre09g1509 | 985 | MobiDBLite | consensus disorder prediction | 951 | 985 | - | - | |
Cre09g1509 | 985 | SUPERFAMILY | Protein kinase-like (PK-like) | 551 | 932 | IPR011009 | - | |
Cre09g1509 | 985 | ProSiteProfiles | Protein kinase domain profile. | 570 | 944 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre09g1509 | 985 | Pfam | Leucine rich repeat N-terminal domain | 309 | 348 | IPR013210 | - | |
Cre09g1509 | 985 | MobiDBLite | consensus disorder prediction | 156 | 177 | - | - | |
Cre09g1509 | 985 | ProSitePatterns | Protein kinases ATP-binding region signature. | 576 | 598 | IPR017441 | GO:0005524(InterPro) | |
Cre09g1509 | 985 | SUPERFAMILY | L domain-like | 310 | 482 | - | - | |
Cre09g1509 | 985 | FunFam | Somatic embryogenesis receptor kinase 1 | 307 | 492 | - | - | |
Cre09g1509 | 985 | Gene3D | Transferase(Phosphotransferase) domain 1 | 647 | 951 | - | - | |
Cre09g1509 | 985 | ProSiteProfiles | Zinc finger CCHC-type profile. | 206 | 221 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Cre09g1509 | 985 | FunFam | Somatic embryogenesis receptor kinase 1 | 539 | 646 | - | - | |
Cre09g1509 | 985 | Pfam | Zinc knuckle | 205 | 220 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Cre09g1509 | 985 | Pfam | Leucine rich repeat | 375 | 435 | IPR001611 | GO:0005515(InterPro) | |
Cre09g1509 | 985 | FunFam | Protein NSP-INTERACTING KINASE 1 | 647 | 794 | - | - | |
Cre09g1509 | 985 | Gene3D | Ribonuclease Inhibitor | 308 | 487 | IPR032675 | - | |
Cre09g1509 | 985 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 869 | 956 | - | - | |
Cre09g1509 | 985 | MobiDBLite | consensus disorder prediction | 163 | 177 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre07g1178 | Cre-Chr7:24513007 | Cre09g1509 | Cre-Chr9:30392926 | 3.20E-19 | dispersed | |
Cre09g1509 | Cre-Chr9:30392926 | Cre10g1082 | Cre-Chr10:21439598 | 8.00E-201 | dispersed | |
Cre11g1240 | Cre-Chr11:10737331 | Cre09g1509 | Cre-Chr9:30392926 | 1.80E-46 | dispersed | |
Cre09g1509 | Cre-Chr9:30392926 | Cre07g2068 | Cre-Chr7:36241445 | 4.40E-106 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64410 | PF00069 | Pkinase | 1.40E-43 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g1509 | K13416 | - | csv:101216386 | 843.573 |