Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1559 ATGGCGGACCGTGGATCTTACGGCTTGGCTCCTCGTTTAGATATCGAGCAGTTATTGATAGAAGCAAAACATCGTTGGTTGCGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATTCTAAGTTTCGTATTACTTCAGAGCCTCCAGATAGACCATCGAGTGGGTCGCTTTTTCTTTTTGATCGTAAGGTTCTGAGGTACTTCAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTCGGAAGCATTGACGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAGAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATGCTGGAGCTGTCGTTGAGACGGACGAGGTTTCATCAAGTTCACAAAAGAGCAGTCCTAGGAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCACTTTAACATCATTTTGTGAAGATGCTGATGCTGAAGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCCACGTTGCCAAAAATGGGAAATAGTCTTCTGGTGAATAAACAAGATGCTGATCAATCAAAATTTTATTTTCCGCATTCCTCTTCCAACAATCTTGACGCTTGGTCATCAGTTCCTTCTGTGGATTATGTAACACAAGTTCAGAAAGCTGGACTTGGGAGTAACGATGGTGATACTGGTGTGATGGGTTCTCAGAAGACACTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACAATGTACAACTGGATTTCAAACTGTACCTTCTCATGTTTTAACCTCTTCGATTGAACCTCTGTCTTCTGGAATTGTCCTTGGACAAGAGAATTCAATTCCTAGCAAGCTTTTAACCAGTAATAGTGCTATTAAAGAGGACTTTGGGAGTTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTATCCTTTTCAAAAGAGCACGCTGACCAGTTTCCAGATTTGTATTCTGTTTATGACATAGATAGCAGGTTTGAGCAGAAATCTCACGATGCAACTTTTGGAAGTGGTCATGAGATGTTTTCTGCTCATCCTGGCATAGAGAATGAGGATATTCTGCCAAACCTTGAATTACAGTTCAAAGAAGGAGAATTGTATTCAGCTATGAGGTTGAGTTCTGAAAATGATATGTCTAAAGAAGGTACCATCAGCTATTCTTTGACTTTGAAACAATCATTAATAGATGGAGAGGAGAGTTTAAAGAAAGTCGATAGCTTCTCAAGGTGGGTATCTAAGGAGCTTGGGGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCCTGGACGACTGTAGAATGTGGTGATATGGTGGATGATTCATCATTAAGCCCTTCTATTTCTGAAGACCAACTTTTCAGTATAACAGCCTTTTCTCCAAAGTGGACACTTGCAGATTTAGAAACTGAGGTTGTGATTATAGGGAAGTTTCTCGGGAACAATCATGGCACAAACTGTCATTGGTCATGTATGTTTGGGGAAGTCGAGGTGCCTGCAGAGGTTTTGGCTGATGGAATCCTGTGCTGTCACGCACCGCCACATAGTGTTGGGCGAGTCCCTTTTTATGTCACATGTTCCAACAGAGTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTAGCAGGCTCTGCGCAAGATGTAGATGTTACCGACATATATACTGTTGGTTCAACGAAAGAATTATGTATGCATTTGCGATTTGAGAGGTTACTCTCTCTTGGATCTTTAGATCCTTCAAATGACCTCTCTGAAGATGCTTTGGAGAAACGGAACTTAATCAGAGAGCTTATCACAATAAAAGAAGAAGAAGATCTTTATGGGGAAGAGCCAAATTCCCAGTATGACCAAATTCAGCATCAAAACAAGGACAAGGAGTTTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTATTCATGGCTTATCCACAAAGTAATTGAAGGTGGCAAAGGTCCTAATATATTGGATGGTGAGGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCCATCAGACCAATTGTAGCTGCTGGAGTGAGTATAAACTTTCGAGACATTAATGGATGGACTGCTGTTCATTGGGCAGCATCCTGTGGCAGGGAGTTGACAGTTGGAACCCTTATGTCATTGGATGCTGATCCTGGATTGCCTTCAGATCCTTCTCCAGAATTTCCATGGGGCAGAACACCGGCAGATCTTGCGTCTGATAATGGACACAAAGGGATCTCTGGTTTCCTCGCAGAGGCAGCATTGACCAGCTATGTCAAATCTGTATCAATGGCTGATTCCATATCAATGGGTGAGGCTGTAGAAGATGGTGTGGCAGACGTCTCAAAGAGGAAACCAGTGCATACTGTTTCTGAACGAAGGGCAACACCAGTAAATGATGGTTTTATGCCTGGTGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCAGAATGTGGAACTGATGAATTTGGATCCTCAGATGATAGTGCTCTTTCACTTGTCAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAGCCCAGTCCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTACTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGGCACCAGGTGAGGAAGCAATATAAAAAGATTGTTTGGTCGGTAGGAATGATAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGAGCAGATGCAGTTGCCAAGGATCCACCCTCCGTGATGGCACCACCTACTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCGCAGTATCCCGAGGGACGAGACCAATACCGTAGGCTGCTTACTGTGGTCCAAAAGTGCCGAGAAACCAAGGGGAGTCATATGGCTGTTACTAGTACTTCGGAAGAGATAATAGAAGGCGATGACATGATTGATATTGACACACTGCTGGACGACGATGCTTTGATGTCTATGACATTTGATTGA 3306 42.77 MADRGSYGLAPRLDIEQLLIEAKHRWLRPAEICEILRNYSKFRITSEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNAGAVVETDEVSSSSQKSSPRSSSYSSSHNQAASENADSPSPTSTLTSFCEDADAEDTYQATSRFHSFPTLPKMGNSLLVNKQDADQSKFYFPHSSSNNLDAWSSVPSVDYVTQVQKAGLGSNDGDTGVMGSQKTLSSASWEEILQQCTTGFQTVPSHVLTSSIEPLSSGIVLGQENSIPSKLLTSNSAIKEDFGSSLTMTSNWQVPFEDNTLSFSKEHADQFPDLYSVYDIDSRFEQKSHDATFGSGHEMFSAHPGIENEDILPNLELQFKEGELYSAMRLSSENDMSKEGTISYSLTLKQSLIDGEESLKKVDSFSRWVSKELGEVDDLHMHPSSGLSWTTVECGDMVDDSSLSPSISEDQLFSITAFSPKWTLADLETEVVIIGKFLGNNHGTNCHWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRVACSEVREFDYLAGSAQDVDVTDIYTVGSTKELCMHLRFERLLSLGSLDPSNDLSEDALEKRNLIRELITIKEEEDLYGEEPNSQYDQIQHQNKDKEFLFVKLMKEKLYSWLIHKVIEGGKGPNILDGEGQGVIHLAAALGYDWAIRPIVAAGVSINFRDINGWTAVHWAASCGRELTVGTLMSLDADPGLPSDPSPEFPWGRTPADLASDNGHKGISGFLAEAALTSYVKSVSMADSISMGEAVEDGVADVSKRKPVHTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAAGRIHLMFRMQSFQRKKLSECGTDEFGSSDDSALSLVKARARKSGLSNSPVHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGMIDKIILRWRRKGSGLRGFRADAVAKDPPSVMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKGSHMAVTSTSEEIIEGDDMIDIDTLLDDDALMSMTFD 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 31741688 31759063 + CrPI670011_09g015590.1 Cre09g1559 508227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1559 1101 ProSiteProfiles IQ motif profile. 925 953 - -
Cre09g1559 1101 Gene3D Immunoglobulins 500 595 IPR013783 -
Cre09g1559 1101 Pfam Ankyrin repeats (3 copies) 714 803 IPR002110 GO:0005515(InterPro)
Cre09g1559 1101 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677(InterPro)
Cre09g1559 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 923 974 IPR027417 -
Cre09g1559 1101 Gene3D - 679 868 IPR036770 -
Cre09g1559 1101 MobiDBLite consensus disorder prediction 146 188 - -
Cre09g1559 1101 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1065 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cre09g1559 1101 Gene3D - 924 971 - -
Cre09g1559 1101 ProSiteProfiles IQ motif profile. 947 971 - -
Cre09g1559 1101 SUPERFAMILY Ankyrin repeat 692 803 IPR036770 -
Cre09g1559 1101 Pfam CG-1 domain 21 134 IPR005559 GO:0003677(InterPro)
Cre09g1559 1101 SUPERFAMILY E set domains 507 591 IPR014756 -
Cre09g1559 1101 SMART CG_1_2 18 136 IPR005559 GO:0003677(InterPro)
Cre09g1559 1101 Pfam IPT/TIG domain 506 579 IPR002909 -
Cre09g1559 1101 Pfam IQ calmodulin-binding motif 925 944 IPR000048 GO:0005515(InterPro)
Cre09g1559 1101 Pfam IQ calmodulin-binding motif 949 968 IPR000048 GO:0005515(InterPro)
Cre09g1559 1101 FunFam Calmodulin-binding transcription activator 2 500 595 - -
Cre09g1559 1101 SMART iq_5 946 968 IPR000048 GO:0005515(InterPro)
Cre09g1559 1101 SMART iq_5 923 945 IPR000048 GO:0005515(InterPro)
Cre09g1559 1101 FunFam Calmodulin-binding transcription activator 2 923 971 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1559 K21596 - - csv:101203707 1935.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0840 Cre-Chr4:27116957 Cre09g1559 Cre-Chr9:31741688 7.80E-161 dispersed
Cre09g1559 Cre-Chr9:31741688 Cre10g1059 Cre-Chr10:20909691 5.00E-143 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1059 . 36 635 CAMTA Transcription Factor Family AT2G22300 53.1 7.5e-167 585.1
Cre09g1559 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 5.6e-277 951.0
Cre10g1060 . 76 212 CAMTA Transcription Factor Family AT5G64220 71.7 3.5e-53 207.6
Cre06g0984 . 6 924 CAMTA Transcription Factor Family AT1G67310 52.3 2.2e-254 875.9
Cre06g1228 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 8.3e-260 893.6
Cre06g1228 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 4.9e-192 668.7
Cre09g1559 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 5.6e-277 951.0
Cre10g1060 . 76 212 CAMTA Transcription Factor Family AT5G64220 71.7 3.5e-53 207.6
Cre10g1059 . 36 635 CAMTA Transcription Factor Family AT2G22300 53.1 7.5e-167 585.1
Cre06g0984 . 6 924 CAMTA Transcription Factor Family AT1G67310 52.3 2.2e-254 875.9
Cre06g1228 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 4.9e-192 668.7
Cre06g1228 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 8.3e-260 893.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54378 PF03859 CG-1 5.40E-51 No_clan Cre TF