Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre09g1589 | ATGTTGTGCCTCCCCCGAAGAATTGATGATTGGCTCATTGAAGGTCTTAATGGTTGGAATTTGATGGGCAAAACTAGGTTCTTGGGTAGCTGTGCTACTAAAGCATCGATGAAGTTATGGGTTCCTCACTGTTTCCTTCTCAATGGGGATGGGGGTTTGATTATTGTGGCAGATGATGTTATTGTTACAGGAGTATTGAGTGCAAAGTGGTCCCCAGACCTCAAAGATGTTCGTTGTGACCTTGATCCAATGCTTATTGCTAATCATGTGAGAAGAACCAATGAACTAAAGGCTGAGGTTGACATCCCTGATGATATAATTATGAAATTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGAAATGCTATTTTGAGAGGCATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCACTGGAGGTGTACAACATGTGGATATTTCTGGTACTAAAGTTCGAGGAGAATCTCATCTACTGTTGGTTGGTGATCCTGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAATTGAGCAACCGAGCTGTGATTACCACTGGATTAGGAAGCACTAGCGCAGGACTGACTGTTGCTGCTGTTAAGGATGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTGGCTGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACAATCCATGAAGCAATGGAACAACAGACTATAAGTGTCGCAAAGGCTGGTCTTGTCACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACATTACGACCCTGAACAACCGCTCTCTGTCAATACAACGCTCTCCGGTCCCTTATTGAGTAGATTTGACATCGTTCTTGTGCTTTTAGATACAAAAAACCCTGAATGGGATGCAGTTGTTTCATCTCATATTCTCTCTGAGTGCGAACAAGAAAAGGGAAAGCATGCCAATGACCTTTCAAGTAACTGGCCTCTTACTATGCTTCGAAGATACATCCAATTTGTAAAAGGATACTTCAGACCGGTCCTGACTAAGGAAGCTGAGCAAATTATTTCAAACTATTATCAGCTTCAAAGAAGATCAGCCATGGATAATGCAGCCAGGACAACAGTACGTATGCTTGAAAGCTTGATACGGTTAGCACAAGCACATGCACGCCTTATGTTTAGAAATGAGGTTACCCGGCTCGATGCCATTACGGCTATTTTGTGCATCGAATCATCCATGACGACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCCAATTTTACCGAGAACCCAGATGAGGAATATGCAAAGCAAGAAATTTTAATACTTGAGAGGCTCAAATCGATGGACGAATAG | 1422 | 42.97 | MLCLPRRIDDWLIEGLNGWNLMGKTRFLGSCATKASMKLWVPHCFLLNGDGGLIIVADDVIVTGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLTGGVQHVDISGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSECEQEKGKHANDLSSNWPLTMLRRYIQFVKGYFRPVLTKEAEQIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSALVDSVGNALHSNFTENPDEEYAKQEILILERLKSMDE | 473 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 32386275 | 32399404 | + | CrPI670011_09g015890.1 | Cre09g1589 | 508257 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre09g1589 | 473 | CDD | MCM9 | 127 | 431 | - | - | |
| Cre09g1589 | 473 | SMART | mcm | 2 | 433 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cre09g1589 | 473 | Gene3D | - | 106 | 437 | IPR027417 | - | |
| Cre09g1589 | 473 | ProSiteProfiles | MCM family domain profile. | 124 | 327 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cre09g1589 | 473 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 57 | 461 | IPR031327 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER) | |
| Cre09g1589 | 473 | FunFam | Probable DNA helicase MCM9 | 102 | 436 | - | - | |
| Cre09g1589 | 473 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 251 | 264 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cre09g1589 | 473 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 274 | 286 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cre09g1589 | 473 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 165 | 180 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cre09g1589 | 473 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 223 | 237 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cre09g1589 | 473 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 301 | 309 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cre09g1589 | 473 | Pfam | MCM P-loop domain | 126 | 329 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cre09g1589 | 473 | SMART | AAA_5 | 166 | 315 | IPR003593 | GO:0016887(InterPro) | |
| Cre09g1589 | 473 | Pfam | MCM AAA-lid domain | 350 | 431 | IPR041562 | - | |
| Cre09g1589 | 473 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 134 | 435 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre09g1589 | Cre-Chr9:32386275 | Cre10g1454 | Cre-Chr10:28362394 | 8.90E-57 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre09g1589 | K10738 | - | csv:101205171 | 786.178 |