Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g1601 | ATGGCATCTTGGAATCGTGATGAAGGCGAGGCAGAGGTTATGGAGAAACTTATGGAAATGAGGACAATGTATTTGGTGGATGTAGTTGTTATTGGAGTGCAAGAATCAATGGTGAGAAGAAAAGCAAGAGAGAGCTTATTGGGAATGCTTGTCTTTTCCTGCCGCAGCCACCCATCAAGAAAACCCACTCCGGCGTTTCTCCGTTCTGGTAGCAGCTCCGGCACTCACCCACCGGCGAACTCCCAGTGTCGGCCCTCACCCAACGGTTCTAAGAACGTTCATCCTTGCACAAATATGCCGTCAAAGGGAAAGAAGAACCCAAAGACACTCTCTAGATTGTCAAACTCCAGCCACTCTCCATCTCCAGTGCCACGATTGACAATACCTCCAGCCTCCGAAGTTTGTGAAGATGAGTTTCTTTCCTCTATTGAAGAAGCTTCAAGTAAATATCCTTCTTTGATTGGTAAATCTGCTTTTGTTGGGAGAGTTACTAGTGCTCCAGTTCAATCTACTGGCTGTAAAGTTTGGCTTTCTGAATCTTCTATGGTTGCTTCTAGCTTCACTCAAGGGGCTATTGTCTCGGTAGCACTTAGTTCCGAGGGAGGTAACAATTTAAAAGGCTTTCCTCTGTCCTCGTTAGCAGATGAATGCGGTAGGCACTTTGGGGTTGATCCTGGAGATTCAATAATCCATGAAGCGGGAAATTACTTTGCTCTTGCGAGAATTTTCTCTTCTAGTAAGGAGTTAAATGATGGAGTGCAATTATCAACAAACCTCTCGTTTACCTTGGGTTGCCCTGAAAGTGGTCGTGTGGTGTTTATCTTCCCTATAAAAGCCCACCTATGCAATGATCCATTAAATGATAATGTGGAATTGAAGAGCACAGAAGTTGAATCTCTGAGAATAATCAATTGTAAGGAACTATTTCTGGAGCTATCTTGTTCATCCAATATATCAACAAAAGACAACCTATTCTCTTCTTCAACTATTTATTCAAGAAAGGTTCATGGTTATAGTGAAAATGGTAATTTAACATCCCCAAGCACCATGTTGTCTGTATCTCCGAAATGTGATGACGTGGTATCAAATTTACTTGTAGACAGTCCATGTGCTCGTTCACTTATTAAGGAGGCCTTAGAAGACGATAGTGTTAGAAAAACTCTACAGACGATTGCTTCCAATGAGTTGTATAAACGTTGTTTGCTGCGTGGTAATCTTGTAACTATCCCAGTGCTTTCAGATCTTTGTACATTTCGTGTGAGGGGTGGTAAAGGACTGTTGGGATATGATGACTCTTATAATTCTATGCACAGTGAAAGTGACGATCATTTTCAACATTTTTCATCAAATGAATATGTGGATTATGCTTTCAATATAGACCAGCTGACAAAAGTATTAATAAATGTTCAATCAACCATGGTGTCAGAGACAGTGCAAGAAAGAGTTCCATCAAATGTGGAACCTCAAAATCTAAATATTAGAGCTAAAGTGAAGCCTAAGGTTTGGAAATTGGGTGGTCTTTCAAAAGAATATGCAGTTTTGAAGGATATTATAATTGCTTCATCATTAAATAGCACTGTGTCCAGCCTTGGTTTACGAACCACAAAGGGAGTACTTCTTCATGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAATTATCTGCTCATGACGCTGGTGTCAACTTATTCTATTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAACAGGCCTTGCATGACGTTTTTGAGGTGGCAAGCCAAGCTGCACCTGCCGTGATATTAATTGATGAGTTGGATGCTATTGCGCCTGCAAGAAAGGATGGAGGTGAAGAGCTGTCTCAAAGAATTGTTGCTACATTGCTCAATCTAATGGATGGGATCAATCGAAGTGGTGGGCCACTTGTAATTGCTTCTACCAACAGACCTGATAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTGCCATCTCCTAACCAACGGTTGGATATTCTACATACAATACTAAGTGAAATGGAGCACTCTCTTTCAGTTGTGCAAGTTCAACATCTAGCTATGGTCACACATGGTTTTGTAGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAGTTTGTATAAGGCGTTATCATGAGTTTAGAGTTTCTTCTGATTGCCTTAGTTCTGGTAGATCTGTTGTAGCAGAGGAACAACACAAGTTTACTGAGGTGGATCACAAAGCCAATGTCGATCATATGATTTTGGAACCTGTTCTCTCACAAGACGCAAGAAGTAAATCAGGCGTTTGCCCAAACCTTGCATCTTCGTCAATCTCTGAGCATACTTTTACATCTGACCCGCTAACATGTGTGTCCTCAAATGAAGTGGTTGCTGATAGTGAGGATATTTTAAACTCTTCCGAAATCAAGGGTAGATTGAAGGTTGTTTTTGAAGACTTTGAGGTGGCTAGAATGAAAGTGAGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAATTGGAGGTTAAGGCTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTAATGTTTGGTCCTCCTGGATGTAGCAAAACCCTGATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTGAAGGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTTAGATCTCTGTTTGCTAAGGCAAGGGCTAATGCCCCATCAATTGTATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTGTCCGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAAATGGATGGTTTACATCAGAGAGTTGGTGTCACTGTCATTGCAGCTACCAATCGGCCAGATAAGATTGATCTAGCCCTCCTAAGGCCAGGACGTTTTGATCGATTGCTTTATGTTGGGCCCCCAAATGAATCTGAACGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGTACGAGGAAGTTGGCTTCTCTTACTCAAGGGTGTACAGGGGCTGACATATCATTAATTTGCAGAGAATCAGCTTTATTTGCCCTTGAGGAGAACCTTGAGGCTTCAAGAATAAATATGAAACATTTAGAAACTGCAGCTAGACACGTGAAGCCATCTGAAACTGAACCTTACCGAGAATTATCATCTAGGTTTCAAAGGCTTGTTTGTTCTAGCTCACAAGAAGTTAATGTCGTGTGTCAGCAGTCACGATCTAACTGGTTTTCTTTTTGGCCCCTTGTAAAATCTATTGTGTTGGTTTTTTCTCGGGAATTGTTTGTCATGGAACTTAATCAAGAAAAAGGTAGTCTTGTACTGGGTCTGGAATGGATGAAATGGCATTTACAAATTATGGGCTGGGATGATTTCATTCACCAAGTGCATTGCATATATCCTGCTTCGGAGTTTGCAGGTGGTGGAACAGAGGTTTCATAG | 3606 | 42.12 | MASWNRDEGEAEVMEKLMEMRTMYLVDVVVIGVQESMVRRKARESLLGMLVFSCRSHPSRKPTPAFLRSGSSSGTHPPANSQCRPSPNGSKNVHPCTNMPSKGKKNPKTLSRLSNSSHSPSPVPRLTIPPASEVCEDEFLSSIEEASSKYPSLIGKSAFVGRVTSAPVQSTGCKVWLSESSMVASSFTQGAIVSVALSSEGGNNLKGFPLSSLADECGRHFGVDPGDSIIHEAGNYFALARIFSSSKELNDGVQLSTNLSFTLGCPESGRVVFIFPIKAHLCNDPLNDNVELKSTEVESLRIINCKELFLELSCSSNISTKDNLFSSSTIYSRKVHGYSENGNLTSPSTMLSVSPKCDDVVSNLLVDSPCARSLIKEALEDDSVRKTLQTIASNELYKRCLLRGNLVTIPVLSDLCTFRVRGGKGLLGYDDSYNSMHSESDDHFQHFSSNEYVDYAFNIDQLTKVLINVQSTMVSETVQERVPSNVEPQNLNIRAKVKPKVWKLGGLSKEYAVLKDIIIASSLNSTVSSLGLRTTKGVLLHGPPGTGKTSLAQLSAHDAGVNLFYLNGPEIISQYHGESEQALHDVFEVASQAAPAVILIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALVCIRRYHEFRVSSDCLSSGRSVVAEEQHKFTEVDHKANVDHMILEPVLSQDARSKSGVCPNLASSSISEHTFTSDPLTCVSSNEVVADSEDILNSSEIKGRLKVVFEDFEVARMKVRPSAMREVILEVPKVKWEDIGGQLEVKAQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVEMDGLHQRVGVTVIAATNRPDKIDLALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLTQGCTGADISLICRESALFALEENLEASRINMKHLETAARHVKPSETEPYRELSSRFQRLVCSSSQEVNVVCQQSRSNWFSFWPLVKSIVLVFSRELFVMELNQEKGSLVLGLEWMKWHLQIMGWDDFIHQVHCIYPASEFAGGGTEVS | 1201 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 32615205 | 32638775 | - | CrPI670011_09g016010.1 | Cre09g1601 | 508269 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g1601 | 1201 | FunFam | spermatogenesis-associated protein 5-like protein 1 | 1022 | 1105 | - | - | |
Cre09g1601 | 1201 | SMART | AAA_5 | 534 | 670 | IPR003593 | GO:0016887(InterPro) | |
Cre09g1601 | 1201 | SMART | AAA_5 | 885 | 1023 | IPR003593 | GO:0016887(InterPro) | |
Cre09g1601 | 1201 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 847 | 1096 | IPR027417 | - | |
Cre09g1601 | 1201 | MobiDBLite | consensus disorder prediction | 65 | 122 | - | - | |
Cre09g1601 | 1201 | ProSiteProfiles | Plant heme peroxidase family profile. | 538 | 866 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
Cre09g1601 | 1201 | Gene3D | - | 846 | 1093 | IPR027417 | - | |
Cre09g1601 | 1201 | FunFam | calmodulin-interacting protein 111 isoform X1 | 846 | 1021 | - | - | |
Cre09g1601 | 1201 | ProSitePatterns | AAA-protein family signature. | 991 | 1009 | IPR003960 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Cre09g1601 | 1201 | MobiDBLite | consensus disorder prediction | 58 | 129 | - | - | |
Cre09g1601 | 1201 | CDD | RecA-like_CDC48_r2-like | 860 | 1019 | - | - | |
Cre09g1601 | 1201 | Gene3D | - | 668 | 791 | - | - | |
Cre09g1601 | 1201 | Gene3D | - | 485 | 667 | IPR027417 | - | |
Cre09g1601 | 1201 | Coils | Coil | 1070 | 1090 | - | - | |
Cre09g1601 | 1201 | Pfam | AAA+ lid domain | 1043 | 1088 | IPR041569 | - | |
Cre09g1601 | 1201 | Pfam | AAA+ lid domain | 692 | 732 | IPR041569 | - | |
Cre09g1601 | 1201 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 504 | 723 | IPR027417 | - | |
Cre09g1601 | 1201 | Gene3D | - | 1022 | 1092 | - | - | |
Cre09g1601 | 1201 | FunFam | Putative vesicular transport protein (CDC48) | 489 | 667 | - | - | |
Cre09g1601 | 1201 | Pfam | ATPase family associated with various cellular activities (AAA) | 538 | 667 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Cre09g1601 | 1201 | Pfam | ATPase family associated with various cellular activities (AAA) | 889 | 1020 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Cre09g1601 | 1201 | PANTHER | AAA-FAMILY ATPASE | 167 | 1110 | IPR050168 | GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER) | |
Cre09g1601 | 1201 | CDD | RecA-like_CDC48_NLV2_r1-like | 503 | 666 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre09g1601 | Cre-Chr9:32615205 | Cre10g2132 | Cre-Chr10:35913000 | 4.20E-119 | dispersed | |
Cre09g1601 | Cre-Chr9:32615205 | Cre04g1016 | Cre-Chr4:28772044 | 6.50E-120 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g1601 | - | - | - | 0.0 |