Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1601 ATGGCATCTTGGAATCGTGATGAAGGCGAGGCAGAGGTTATGGAGAAACTTATGGAAATGAGGACAATGTATTTGGTGGATGTAGTTGTTATTGGAGTGCAAGAATCAATGGTGAGAAGAAAAGCAAGAGAGAGCTTATTGGGAATGCTTGTCTTTTCCTGCCGCAGCCACCCATCAAGAAAACCCACTCCGGCGTTTCTCCGTTCTGGTAGCAGCTCCGGCACTCACCCACCGGCGAACTCCCAGTGTCGGCCCTCACCCAACGGTTCTAAGAACGTTCATCCTTGCACAAATATGCCGTCAAAGGGAAAGAAGAACCCAAAGACACTCTCTAGATTGTCAAACTCCAGCCACTCTCCATCTCCAGTGCCACGATTGACAATACCTCCAGCCTCCGAAGTTTGTGAAGATGAGTTTCTTTCCTCTATTGAAGAAGCTTCAAGTAAATATCCTTCTTTGATTGGTAAATCTGCTTTTGTTGGGAGAGTTACTAGTGCTCCAGTTCAATCTACTGGCTGTAAAGTTTGGCTTTCTGAATCTTCTATGGTTGCTTCTAGCTTCACTCAAGGGGCTATTGTCTCGGTAGCACTTAGTTCCGAGGGAGGTAACAATTTAAAAGGCTTTCCTCTGTCCTCGTTAGCAGATGAATGCGGTAGGCACTTTGGGGTTGATCCTGGAGATTCAATAATCCATGAAGCGGGAAATTACTTTGCTCTTGCGAGAATTTTCTCTTCTAGTAAGGAGTTAAATGATGGAGTGCAATTATCAACAAACCTCTCGTTTACCTTGGGTTGCCCTGAAAGTGGTCGTGTGGTGTTTATCTTCCCTATAAAAGCCCACCTATGCAATGATCCATTAAATGATAATGTGGAATTGAAGAGCACAGAAGTTGAATCTCTGAGAATAATCAATTGTAAGGAACTATTTCTGGAGCTATCTTGTTCATCCAATATATCAACAAAAGACAACCTATTCTCTTCTTCAACTATTTATTCAAGAAAGGTTCATGGTTATAGTGAAAATGGTAATTTAACATCCCCAAGCACCATGTTGTCTGTATCTCCGAAATGTGATGACGTGGTATCAAATTTACTTGTAGACAGTCCATGTGCTCGTTCACTTATTAAGGAGGCCTTAGAAGACGATAGTGTTAGAAAAACTCTACAGACGATTGCTTCCAATGAGTTGTATAAACGTTGTTTGCTGCGTGGTAATCTTGTAACTATCCCAGTGCTTTCAGATCTTTGTACATTTCGTGTGAGGGGTGGTAAAGGACTGTTGGGATATGATGACTCTTATAATTCTATGCACAGTGAAAGTGACGATCATTTTCAACATTTTTCATCAAATGAATATGTGGATTATGCTTTCAATATAGACCAGCTGACAAAAGTATTAATAAATGTTCAATCAACCATGGTGTCAGAGACAGTGCAAGAAAGAGTTCCATCAAATGTGGAACCTCAAAATCTAAATATTAGAGCTAAAGTGAAGCCTAAGGTTTGGAAATTGGGTGGTCTTTCAAAAGAATATGCAGTTTTGAAGGATATTATAATTGCTTCATCATTAAATAGCACTGTGTCCAGCCTTGGTTTACGAACCACAAAGGGAGTACTTCTTCATGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAATTATCTGCTCATGACGCTGGTGTCAACTTATTCTATTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAACAGGCCTTGCATGACGTTTTTGAGGTGGCAAGCCAAGCTGCACCTGCCGTGATATTAATTGATGAGTTGGATGCTATTGCGCCTGCAAGAAAGGATGGAGGTGAAGAGCTGTCTCAAAGAATTGTTGCTACATTGCTCAATCTAATGGATGGGATCAATCGAAGTGGTGGGCCACTTGTAATTGCTTCTACCAACAGACCTGATAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTGCCATCTCCTAACCAACGGTTGGATATTCTACATACAATACTAAGTGAAATGGAGCACTCTCTTTCAGTTGTGCAAGTTCAACATCTAGCTATGGTCACACATGGTTTTGTAGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAGTTTGTATAAGGCGTTATCATGAGTTTAGAGTTTCTTCTGATTGCCTTAGTTCTGGTAGATCTGTTGTAGCAGAGGAACAACACAAGTTTACTGAGGTGGATCACAAAGCCAATGTCGATCATATGATTTTGGAACCTGTTCTCTCACAAGACGCAAGAAGTAAATCAGGCGTTTGCCCAAACCTTGCATCTTCGTCAATCTCTGAGCATACTTTTACATCTGACCCGCTAACATGTGTGTCCTCAAATGAAGTGGTTGCTGATAGTGAGGATATTTTAAACTCTTCCGAAATCAAGGGTAGATTGAAGGTTGTTTTTGAAGACTTTGAGGTGGCTAGAATGAAAGTGAGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAATTGGAGGTTAAGGCTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTAATGTTTGGTCCTCCTGGATGTAGCAAAACCCTGATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTGAAGGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCAGTTAGATCTCTGTTTGCTAAGGCAAGGGCTAATGCCCCATCAATTGTATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTGTCCGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAAATGGATGGTTTACATCAGAGAGTTGGTGTCACTGTCATTGCAGCTACCAATCGGCCAGATAAGATTGATCTAGCCCTCCTAAGGCCAGGACGTTTTGATCGATTGCTTTATGTTGGGCCCCCAAATGAATCTGAACGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGTACGAGGAAGTTGGCTTCTCTTACTCAAGGGTGTACAGGGGCTGACATATCATTAATTTGCAGAGAATCAGCTTTATTTGCCCTTGAGGAGAACCTTGAGGCTTCAAGAATAAATATGAAACATTTAGAAACTGCAGCTAGACACGTGAAGCCATCTGAAACTGAACCTTACCGAGAATTATCATCTAGGTTTCAAAGGCTTGTTTGTTCTAGCTCACAAGAAGTTAATGTCGTGTGTCAGCAGTCACGATCTAACTGGTTTTCTTTTTGGCCCCTTGTAAAATCTATTGTGTTGGTTTTTTCTCGGGAATTGTTTGTCATGGAACTTAATCAAGAAAAAGGTAGTCTTGTACTGGGTCTGGAATGGATGAAATGGCATTTACAAATTATGGGCTGGGATGATTTCATTCACCAAGTGCATTGCATATATCCTGCTTCGGAGTTTGCAGGTGGTGGAACAGAGGTTTCATAG 3606 42.12 MASWNRDEGEAEVMEKLMEMRTMYLVDVVVIGVQESMVRRKARESLLGMLVFSCRSHPSRKPTPAFLRSGSSSGTHPPANSQCRPSPNGSKNVHPCTNMPSKGKKNPKTLSRLSNSSHSPSPVPRLTIPPASEVCEDEFLSSIEEASSKYPSLIGKSAFVGRVTSAPVQSTGCKVWLSESSMVASSFTQGAIVSVALSSEGGNNLKGFPLSSLADECGRHFGVDPGDSIIHEAGNYFALARIFSSSKELNDGVQLSTNLSFTLGCPESGRVVFIFPIKAHLCNDPLNDNVELKSTEVESLRIINCKELFLELSCSSNISTKDNLFSSSTIYSRKVHGYSENGNLTSPSTMLSVSPKCDDVVSNLLVDSPCARSLIKEALEDDSVRKTLQTIASNELYKRCLLRGNLVTIPVLSDLCTFRVRGGKGLLGYDDSYNSMHSESDDHFQHFSSNEYVDYAFNIDQLTKVLINVQSTMVSETVQERVPSNVEPQNLNIRAKVKPKVWKLGGLSKEYAVLKDIIIASSLNSTVSSLGLRTTKGVLLHGPPGTGKTSLAQLSAHDAGVNLFYLNGPEIISQYHGESEQALHDVFEVASQAAPAVILIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALVCIRRYHEFRVSSDCLSSGRSVVAEEQHKFTEVDHKANVDHMILEPVLSQDARSKSGVCPNLASSSISEHTFTSDPLTCVSSNEVVADSEDILNSSEIKGRLKVVFEDFEVARMKVRPSAMREVILEVPKVKWEDIGGQLEVKAQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVEMDGLHQRVGVTVIAATNRPDKIDLALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLTQGCTGADISLICRESALFALEENLEASRINMKHLETAARHVKPSETEPYRELSSRFQRLVCSSSQEVNVVCQQSRSNWFSFWPLVKSIVLVFSRELFVMELNQEKGSLVLGLEWMKWHLQIMGWDDFIHQVHCIYPASEFAGGGTEVS 1201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32615205 32638775 - CrPI670011_09g016010.1 Cre09g1601 508269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1601 1201 FunFam spermatogenesis-associated protein 5-like protein 1 1022 1105 - -
Cre09g1601 1201 SMART AAA_5 534 670 IPR003593 GO:0016887(InterPro)
Cre09g1601 1201 SMART AAA_5 885 1023 IPR003593 GO:0016887(InterPro)
Cre09g1601 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 847 1096 IPR027417 -
Cre09g1601 1201 MobiDBLite consensus disorder prediction 65 122 - -
Cre09g1601 1201 ProSiteProfiles Plant heme peroxidase family profile. 538 866 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre09g1601 1201 Gene3D - 846 1093 IPR027417 -
Cre09g1601 1201 FunFam calmodulin-interacting protein 111 isoform X1 846 1021 - -
Cre09g1601 1201 ProSitePatterns AAA-protein family signature. 991 1009 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre09g1601 1201 MobiDBLite consensus disorder prediction 58 129 - -
Cre09g1601 1201 CDD RecA-like_CDC48_r2-like 860 1019 - -
Cre09g1601 1201 Gene3D - 668 791 - -
Cre09g1601 1201 Gene3D - 485 667 IPR027417 -
Cre09g1601 1201 Coils Coil 1070 1090 - -
Cre09g1601 1201 Pfam AAA+ lid domain 1043 1088 IPR041569 -
Cre09g1601 1201 Pfam AAA+ lid domain 692 732 IPR041569 -
Cre09g1601 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 723 IPR027417 -
Cre09g1601 1201 Gene3D - 1022 1092 - -
Cre09g1601 1201 FunFam Putative vesicular transport protein (CDC48) 489 667 - -
Cre09g1601 1201 Pfam ATPase family associated with various cellular activities (AAA) 538 667 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre09g1601 1201 Pfam ATPase family associated with various cellular activities (AAA) 889 1020 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre09g1601 1201 PANTHER AAA-FAMILY ATPASE 167 1110 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
Cre09g1601 1201 CDD RecA-like_CDC48_NLV2_r1-like 503 666 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1601 Cre-Chr9:32615205 Cre10g2132 Cre-Chr10:35913000 4.20E-119 dispersed
Cre09g1601 Cre-Chr9:32615205 Cre04g1016 Cre-Chr4:28772044 6.50E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1601 - - - 0.0