Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1620 ATGACAAGGAAGAAAATTCAGATCAAGAAGATTGACAACATAGCTGCAAGACAAGTTGCATTTTCAAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTAAAGAGCTTGCAATTCTTTGTGATGCTGAGATTGGCCTTCTTGTTTTTTCTGCTTCTGGGAAGCTCTTTGACTATGCAAGTTCAAGCAAAGTAAATTATGTCTTCAAAGAGTCGGCCGTGGGGAGCCTCCTTATCTTCAGCATTCCAGGCATCTTCGATAGTGATCATTTTGTCCTTAGTCAGAGCAAAAAAACCTGGGGTACTGCAAGTATAGATTTTCTGTGCCGCACGAAAGGTGGTACCAGAAAAGGGTGGAAGCGCCATTGTGGATCTGTCTTTGTAACTTACTGCTCATAA 393 41.73 MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASSSKVNYVFKESAVGSLLIFSIPGIFDSDHFVLSQSKKTWGTASIDFLCRTKGGTRKGWKRHCGSVFVTYCS 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33150933 33154399 - CrPI670011_09g016200.1 Cre09g1620 508288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1620 130 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1620 130 Gene3D - 13 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1620 130 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1620 130 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1620 130 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1620 130 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 61 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre09g1620 130 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1620 130 SUPERFAMILY SRF-like 2 65 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1620 130 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1620 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1620 Cre-Chr9:33150933 Cre04g1458 Cre-Chr4:33353671 9.10E-20 dispersed
Cre09g1620 Cre-Chr9:33150933 Cre10g1125 Cre-Chr10:23271488 1.00E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g956 . . . . . . . . Cmo19g00492 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g00595 . . . . . . . . . . . . . . Cma19g00475 . Car19g00350 . . . . . . . . . Cla09g01571 Cam09g1583 Cec09g1725 Cco09g1786 . . Cre09g1620 . . Chy01g00215 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007708 1 4 0 0 0 2 1 2 2 1 1 1 1 0 1 1 2 0 0 2 1 1 1 0 1 1 0 1 3 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54379 PF00319 SRF-TF 1.70E-22 No_clan Cre TF