Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1636 ATGAAGACGGAGAATGGAAGGAAACAAGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCGATATCATCTCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGATCACCCTCATCAAGGCTCATGGGTTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATGTGGTGA 516 50.39 MKTENGRKQGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 171
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 33675716 33679488 - CrPI670011_09g016360.1 Cre09g1636 508304
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1636 171 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Cre09g1636 171 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
Cre09g1636 171 Coils Coil 95 122 - -
Cre09g1636 171 MobiDBLite consensus disorder prediction 130 153 - -
Cre09g1636 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 15 136 - -
Cre09g1636 171 MobiDBLite consensus disorder prediction 130 151 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0226 Cre-Chr1:1635072 Cre09g1636 Cre-Chr9:33675716 1.20E-42 dispersed
Cre02g2240 Cre-Chr2:36019568 Cre09g1636 Cre-Chr9:33675716 8.00E-42 dispersed
Cre06g2588 Cre-Chr6:33590516 Cre09g1636 Cre-Chr9:33675716 6.80E-37 dispersed
Cre07g0805 Cre-Chr7:6832827 Cre09g1636 Cre-Chr9:33675716 4.00E-44 dispersed
Cre07g0881 Cre-Chr7:7515089 Cre09g1636 Cre-Chr9:33675716 4.00E-37 dispersed
Cre09g1636 Cre-Chr9:33675716 Cre11g1551 Cre-Chr11:24820525 2.40E-36 dispersed
Cre09g1636 Cre-Chr9:33675716 Cre02g2163 Cre-Chr2:35235154 1.00E-58 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54382 PF03195 LOB 2.50E-43 No_clan Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1636 - - - 0.0