Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre09g1636 | ATGAAGACGGAGAATGGAAGGAAACAAGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCGATATCATCTCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGATCACCCTCATCAAGGCTCATGGGTTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATGTGGTGA | 516 | 50.39 | MKTENGRKQGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW | 171 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 33675716 | 33679488 | - | CrPI670011_09g016360.1 | Cre09g1636 | 508304 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre09g1636 | 171 | ProSiteProfiles | LOB domain profile. | 15 | 116 | IPR004883 | - | |
| Cre09g1636 | 171 | Pfam | Lateral organ boundaries (LOB) domain | 16 | 113 | IPR004883 | - | |
| Cre09g1636 | 171 | Coils | Coil | 95 | 122 | - | - | |
| Cre09g1636 | 171 | MobiDBLite | consensus disorder prediction | 130 | 153 | - | - | |
| Cre09g1636 | 171 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 15 | 136 | - | - | |
| Cre09g1636 | 171 | MobiDBLite | consensus disorder prediction | 130 | 151 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre01g0226 | Cre-Chr1:1635072 | Cre09g1636 | Cre-Chr9:33675716 | 1.20E-42 | dispersed | |
| Cre02g2240 | Cre-Chr2:36019568 | Cre09g1636 | Cre-Chr9:33675716 | 8.00E-42 | dispersed | |
| Cre06g2588 | Cre-Chr6:33590516 | Cre09g1636 | Cre-Chr9:33675716 | 6.80E-37 | dispersed | |
| Cre07g0805 | Cre-Chr7:6832827 | Cre09g1636 | Cre-Chr9:33675716 | 4.00E-44 | dispersed | |
| Cre07g0881 | Cre-Chr7:7515089 | Cre09g1636 | Cre-Chr9:33675716 | 4.00E-37 | dispersed | |
| Cre09g1636 | Cre-Chr9:33675716 | Cre11g1551 | Cre-Chr11:24820525 | 2.40E-36 | dispersed | |
| Cre09g1636 | Cre-Chr9:33675716 | Cre02g2163 | Cre-Chr2:35235154 | 1.00E-58 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 54382 | PF03195 | LOB | 2.50E-43 | No_clan | Cre | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre09g1636 | - | - | - | 0.0 |