Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1674 ATGGCGTGCCGGAATCTCCTCCGGCTGTGTTTTTCATCTTTGGTGTTTCTTGTTTTCATATTCTTTCCTGTAGGAGAAGCAGAGGCGGATCTTGCGTCGGACACGGCGGCGCTGGTGGCGCTTCAGAAGGCCATGGGTGTTTTGAGCCGGACTCGCTATTGGAACCTCTCCGAGAAGACTCCATGTTTCTGGCTTGGCGTTACTTGCGGCGGTGGGAGGGTTACTGAACTGCGGCTTCCCGGCGTTGGTCTCGTCGGCCAACTTCCTTTAGGGCTTGGAAATTTAACTCAACTTGAAACCCTGTCTCTTCGCTCTAACATGCTTTCAGGTTCTATTCCGTCTGATTTTGCAAACCTCCGCTCCCTCCGGAACCTCTACTTGCAATGGAACTCGTTTTCCGGCGAGATTCCTCCGGTTCTGTTCAGTATTCAGAGTCTTGTTCGCCTGAATTTGGCCCACAACAAGTTCGTCGGTCCGATTTCATTAGGTTTCAATAATCTCACGAACCTACAGGTTCTCAATTTGGAAGAGAATCAACTCGATGGAATTATTCCTGATTTGAACATTCCCTCGCTCAATGCTCTCAATGTTTCTTTCAATCGTCTCAATGGCTCTATCCCTTCGCGATTTTCCGATCAACCAGCCAATGCCTTCGACGGCAACTCGCTCTGCGGGAAGCCACTGAGCCCTTGCAACAGCGAGAAGAAGAAATTATCCGCTGGAGCAATCGCTGGAATCATTATCGGAAGTTTGATTGTATTCTTGCTCATCGTTCTGATTTTGATCTTTCTGTGCCGGAAGACGATCAAGATTAATCGGCCGAATGATGGTCAGACGATGGCGACAAGCTCCGGGAGATTGTCGTCGGAGGTTGAGAGTGCAGTTGGCGGAAATAGAGGAGGTGGGAATGAGAGGAATTTGGTGTTCTGTAGGAAAGGAGAAAGTGTGTTTGATTTGGAGGAACTGTTGAAAGCTTCTGCAGAGGTATTAGGGAAAGGGAGTTTTGGGTCAACTTACAAGGCAGCTCTGGATGTGGGGATAACTGTGGTGGTTAAGAGGTTGAGAGATGTCAAAGTTTCAGAGGAGGAATTCAAGGAGAAGATTGAAAGCTTGGGGATGATGAATCATCAGAACTTAGTTCCTATTAAGGGTTACTATTATGGCAGAGATGAGAAGCTTCTGCTCTGTGATTATGTCTCCATGGGAAGCTTATCTGTACATTTACATGGCAACAAAGATCCTAGTAGGACTTCATTGAAATGGGAAGCAAGGGTTGGCATTGCACTTGCGGCTGCTCGGGGGATTACGTATCTACATTCTCGACGACCTCCGACCTCTCATGGCAACATAAAGTCTTCAAACATTCTCCTCAACAGATCCCATACAGCTTGTGTCTCTGACTTTGGTCTCATTCAGATTGCAAGTCCTACATCCACTCCAAACCATGTTGCAACCTACCGCGCCCCTGAAGTCACCGATCCTCGTAAAGTATCCCTGAAAGCAGATGTTTACAGTTTTGGTGTGGTAATTCTAGAGCTTCTAACAGGGAAGGCTCCGAACTCGGCAATGCTCAATGACGATGGCGTAGACCTCCCACGATGGGTGCACTCAAAGATCGAAGAGGAGAAGACTGCTGAAGTGTTCGATGAGGAGCTATTAGAATACAAGAATGGCTTGGATGAAATGGTGCAACTTCTGCAACTTGCCATGTTATGTACAGCACCACACCCGGATAGTCGACCTACGATGGCGAAGGTGACGAGTCGAATCGATGAAATATATCATTCGATCTTACTGAAAGAACAAGATACGAGCATCGACAAGTTTTATGATGTGGACAGTACTGTTTCTCAGCAATTTTACTCAGCTGATTCAATCATGATTCCTCTTCCACCTTCGATCTAG 1905 47.09 MACRNLLRLCFSSLVFLVFIFFPVGEAEADLASDTAALVALQKAMGVLSRTRYWNLSEKTPCFWLGVTCGGGRVTELRLPGVGLVGQLPLGLGNLTQLETLSLRSNMLSGSIPSDFANLRSLRNLYLQWNSFSGEIPPVLFSIQSLVRLNLAHNKFVGPISLGFNNLTNLQVLNLEENQLDGIIPDLNIPSLNALNVSFNRLNGSIPSRFSDQPANAFDGNSLCGKPLSPCNSEKKKLSAGAIAGIIIGSLIVFLLIVLILIFLCRKTIKINRPNDGQTMATSSGRLSSEVESAVGGNRGGGNERNLVFCRKGESVFDLEELLKASAEVLGKGSFGSTYKAALDVGITVVVKRLRDVKVSEEEFKEKIESLGMMNHQNLVPIKGYYYGRDEKLLLCDYVSMGSLSVHLHGNKDPSRTSLKWEARVGIALAAARGITYLHSRRPPTSHGNIKSSNILLNRSHTACVSDFGLIQIASPTSTPNHVATYRAPEVTDPRKVSLKADVYSFGVVILELLTGKAPNSAMLNDDGVDLPRWVHSKIEEEKTAEVFDEELLEYKNGLDEMVQLLQLAMLCTAPHPDSRPTMAKVTSRIDEIYHSILLKEQDTSIDKFYDVDSTVSQQFYSADSIMIPLPPSI 634
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 34483421 34485815 - CrPI670011_09g016740.1 Cre09g1674 508342
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1674 634 Gene3D Ribonuclease Inhibitor 34 142 IPR032675 -
Cre09g1674 634 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Cre09g1674 634 SUPERFAMILY Protein kinase-like (PK-like) 328 588 IPR011009 -
Cre09g1674 634 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 399 603 - -
Cre09g1674 634 Gene3D Transferase(Phosphotransferase) domain 1 399 603 - -
Cre09g1674 634 Pfam Protein tyrosine and serine/threonine kinase 328 589 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g1674 634 ProSiteProfiles Protein kinase domain profile. 324 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g1674 634 Gene3D Phosphorylase Kinase; domain 1 298 398 - -
Cre09g1674 634 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524(InterPro)
Cre09g1674 634 SMART LRR_typ_2 95 118 IPR003591 -
Cre09g1674 634 SMART LRR_typ_2 119 143 IPR003591 -
Cre09g1674 634 SMART LRR_typ_2 167 190 IPR003591 -
Cre09g1674 634 Gene3D Ribonuclease Inhibitor 143 231 IPR032675 -
Cre09g1674 634 PANTHER OS05G0588300 PROTEIN 11 596 IPR050994 -
Cre09g1674 634 FunFam pollen receptor-like kinase 1 294 398 - -
Cre09g1674 634 FunFam Probable inactive receptor kinase RLK902 31 188 - -
Cre09g1674 634 Pfam Leucine Rich Repeat 121 141 IPR001611 GO:0005515(InterPro)
Cre09g1674 634 Pfam Leucine Rich Repeat 169 186 IPR001611 GO:0005515(InterPro)
Cre09g1674 634 Pfam Leucine Rich Repeat 97 119 IPR001611 GO:0005515(InterPro)
Cre09g1674 634 SUPERFAMILY L domain-like 46 212 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1308 Cre-Chr5:13846341 Cre09g1674 Cre-Chr9:34483421 1.30E-135 dispersed
Cre09g1674 Cre-Chr9:34483421 Cre11g0754 Cre-Chr11:4739809 6.50E-103 dispersed
Cre09g1674 Cre-Chr9:34483421 Cre01g1386 Cre-Chr1:27109836 6.20E-130 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64413 PF07714 PK_Tyr_Ser-Thr 2.40E-35 CL0016 Cre PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1674 - - - 0.0