Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1680 ATGGTTCTCTCCAAGACTGCTTCTCAGACCGATGTCTCCGTCCACTCCACCTTCGCTTCTCGATATGTGCGAACCTCTCTCCCGAGATTCAAAATGCCGGAAAATTCGATTCCCAAGGAGGCTGCGTTTCAGATCATTAATGATGAACTCATGCTCGATGGAAACCCTAGGTTGAATTTGGCCTCCTTCGTCACTACTTGGATGGAGCCTGAGTGTGATAAACTCATCATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAATATCCTGTCACTACAGAGCTTCAGGTACTTTTTTTTTATCTCTCTGTTAGCTTCAATCGAAAGACTAGATCCATTTTTCGTTCCATCGTTTCTCTCCATGAACGGTTATTTTCCTCTGGAAATTCTCCTGAATTGGGAATTGCAGCGTTTTCGGTGGTTGCGGAATTCTACGACCGAGATTAA 450 44.44 MVLSKTASQTDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQVLFFYLSVSFNRKTRSIFRSIVSLHERLFSSGNSPELGIAAFSVVAEFYDRD 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34561921 34562534 - CrPI670011_09g016800.1 Cre09g1680 508348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1680 149 Gene3D - 1 65 - -
Cre09g1680 149 PANTHER GLUTAMATE DECARBOXYLASE 1 97 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cre09g1680 149 FunFam Glutamate decarboxylase 1 65 - -
Cre09g1680 149 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 99 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cre09g1680 149 SUPERFAMILY PLP-dependent transferases 15 97 IPR015424 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1680 Cre-Chr9:34561921 Cre09g1837 Cre-Chr9:36730179 1.40E-45 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1680 K01580 - csv:101216119 193.741