Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1687 ATGTCAAAAGAGGAGGTTATTATTTTGGACTGTTTGATCAGCCCATTTTGCAATAGGGTTAAGATTGCTTTGAATGAGAAGGGAGTGAGTTATGAGAGTAGGGAAGAGGATTTGTTTGGTTTGAAAGGTGGGAAAAGTGAGTTGTTGCTCAAATCAAACCCTATTTATAAGAAAGTGCCTGTTCTCTTGCATAATGGCAAGCCATTGAATGAAAGTTCTATTATTGTCAACTATATTGATGAGACTTGGCCATCTTCTTCCCCACTTCTTCCTTCTTCGCCCTACGAAAGAGCTCAAGCTCGGTTCTGGATTGACTACATCGATAAAAAGGTATTTGATGTGGGTTCCAAGATTTGGAAGAGCAATGGAGAAGAGCAAGAGGCAGCCAAGAAAGAGTTGATAGAGATTTTGAAGCAATTGGAGGAAGCTTTAGGTGACAAAGATTTCTTTGGAGGGGAAAGGTTTGGGATTGTGGATGTGATTGCAATCCCATTCACAAGTTGGTTCAATGCTTATGAGAAAGTTGGGAACTTCAAAGTGGAAGAACATTGCCCTAAATTCTCAGCTTGGGAAAAGAGATGTTTGCAAAAGGAGACTGTTGCAAGTGTTATCCCTTGCCCTGAGAAGATCTATAACTTTCTCACCTCCATGAGAAACAACCTTGGCCTTGAATAG 675 40.59 MSKEEVIILDCLISPFCNRVKIALNEKGVSYESREEDLFGLKGGKSELLLKSNPIYKKVPVLLHNGKPLNESSIIVNYIDETWPSSSPLLPSSPYERAQARFWIDYIDKKVFDVGSKIWKSNGEEQEAAKKELIEILKQLEEALGDKDFFGGERFGIVDVIAIPFTSWFNAYEKVGNFKVEEHCPKFSAWEKRCLQKETVASVIPCPEKIYNFLTSMRNNLGLE 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34714983 34716451 + CrPI670011_09g016870.1 Cre09g1687 508355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1687 224 CDD GST_N_Tau 6 83 - -
Cre09g1687 224 Pfam Glutathione S-transferase, C-terminal domain 119 197 IPR004046 -
Cre09g1687 224 SUPERFAMILY GST C-terminal domain-like 81 220 IPR036282 -
Cre09g1687 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 215 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cre09g1687 224 CDD GST_C_Tau 95 217 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cre09g1687 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 87 IPR004045 -
Cre09g1687 224 ProSiteProfiles Glutaredoxin domain profile. 1 97 - -
Cre09g1687 224 Coils Coil 123 146 - -
Cre09g1687 224 Gene3D - 93 224 - -
Cre09g1687 224 Gene3D Glutaredoxin 2 92 - -
Cre09g1687 224 Pfam Glutathione S-transferase, N-terminal domain 11 84 IPR004045 -
Cre09g1687 224 FunFam Tau class glutathione S-transferase 1 92 - -
Cre09g1687 224 SFLD Main (cytGST) 2 221 - -
Cre09g1687 224 SFLD Main.3: Omega- and Tau-like 2 221 IPR045073 -
Cre09g1687 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 93 213 IPR010987 -
Cre09g1687 224 FunFam Glutathione S-transferase U20 93 224 - -
Cre09g1687 224 SUPERFAMILY Thioredoxin-like 12 111 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1687 K00799 - - csv:101213628 412.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1424 Cre-Chr7:29277902 Cre09g1687 Cre-Chr9:34714983 2.70E-64 dispersed
Cre07g1425 Cre-Chr7:29280418 Cre09g1687 Cre-Chr9:34714983 3.60E-69 dispersed
Cre07g1426 Cre-Chr7:29284880 Cre09g1687 Cre-Chr9:34714983 3.00E-57 dispersed
Cre09g1687 Cre-Chr9:34714983 Cre05g2601 Cre-Chr5:37106836 2.10E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g708 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00840 Cam01g0865 Cec01g0865 Cco01g0892 Clacu01g0854 Cmu01g0823 Cre09g1687 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre09g0573 . 1 210 Glutathione S-transferase Gene Family AT4G02520 60.1 5.2e-65 244.6
Cre09g0575 . 1 209 Glutathione S-transferase Gene Family AT4G02520 58.0 6.8e-65 244.2
Cre09g0574 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.2 2.8e-58 222.2
Cre09g0573 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 2.8e-66 248.8
Cre09g0575 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.2 2.0e-64 242.7
Cre09g0574 . 1 210 Glutathione S-transferase Gene Family AT2G02930 55.9 2.5e-59 225.7
Cre09g0575 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.7 1.6e-60 229.9
Cre09g0573 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 1.8e-59 226.5
Cre09g0574 . 5 206 Glutathione S-transferase Gene Family AT1G02950 52.2 7.2e-53 204.5
Cre09g0573 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 5.7e-64 241.1
Cre09g0575 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 2.4e-62 235.7
Cre09g0574 . 1 210 Glutathione S-transferase Gene Family AT1G02930 53.3 2.3e-57 219.2
Cre09g0573 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.3e-65 245.7
Cre09g0575 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 2.2e-63 239.2
Cre09g0574 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.8 2.5e-59 225.7
Cre09g0575 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 2.8e-68 255.8
Cre09g0573 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.2 1.7e-65 246.5
Cre09g0574 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.3 3.3e-61 232.3
Cre09g0576 . 1 214 Glutathione S-transferase Gene Family AT3G62760 57.5 9.2e-73 270.4
Cre09g0573 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 2.4e-48 189.5
Cre04g0857 . 3 214 Glutathione S-transferase Gene Family AT3G09270 53.8 3.6e-64 241.9
Cre05g0336 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 8.5e-58 220.7
Cre04g0862 . 1 222 Glutathione S-transferase Gene Family AT3G09270 52.2 2.5e-57 219.2
Cre04g0847 . 224 421 Glutathione S-transferase Gene Family AT3G09270 51.8 9.5e-57 217.2
Cre05g2601 . 1 109 Glutathione S-transferase Gene Family AT1G74590 60.6 3.9e-37 152.1
Cre07g1425 . 1 216 Glutathione S-transferase Gene Family AT1G78380 69.9 8.6e-87 317.0
Cre07g1423 . 1 214 Glutathione S-transferase Gene Family AT1G78380 70.6 1.1e-86 316.6
Cre07g1424 . 1 217 Glutathione S-transferase Gene Family AT1G78380 67.3 6.4e-82 300.8
Cre09g1687 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.4 8.9e-68 253.8
Cre07g1426 . 1 201 Glutathione S-transferase Gene Family AT1G78380 51.2 8.6e-55 210.7
Cre07g1423 . 7 214 Glutathione S-transferase Gene Family AT1G78370 64.9 3.8e-79 291.6
Cre07g1425 . 7 214 Glutathione S-transferase Gene Family AT1G78370 61.5 1.1e-73 273.5
Cre07g1424 . 7 216 Glutathione S-transferase Gene Family AT1G78370 57.1 3.2e-70 261.9
Cre09g1687 . 7 220 Glutathione S-transferase Gene Family AT1G78370 54.7 5.9e-64 241.1
Cre07g1423 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 1.0e-79 293.5
Cre07g1425 . 1 216 Glutathione S-transferase Gene Family AT1G78340 63.9 6.5e-79 290.8
Cre07g1424 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.4 6.3e-74 274.2
Cre09g1687 . 4 218 Glutathione S-transferase Gene Family AT1G78340 54.0 3.9e-63 238.4
Cre07g1423 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.7 4.2e-61 231.5
Cre07g1423 . 1 218 Glutathione S-transferase Gene Family AT1G17180 69.7 8.4e-90 327.0
Cre07g1425 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.5 1.7e-82 302.8
Cre07g1424 . 1 220 Glutathione S-transferase Gene Family AT1G17180 61.4 1.6e-80 296.2
Cre09g1687 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.7 1.8e-68 256.1
Cre07g1426 . 1 195 Glutathione S-transferase Gene Family AT1G17180 51.3 4.6e-56 214.9
Cre07g1423 . 3 217 Glutathione S-transferase Gene Family AT1G17190 58.1 2.4e-73 272.3
Cre07g1425 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.5 7.8e-72 267.3
Cre07g1424 . 2 218 Glutathione S-transferase Gene Family AT1G17190 53.9 6.2e-69 257.7
Cre07g1423 . 3 214 Glutathione S-transferase Gene Family AT3G43800 57.9 5.2e-71 264.6
Cre07g1425 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.5 4.9e-69 258.1
Cre07g1424 . 3 212 Glutathione S-transferase Gene Family AT3G43800 53.1 5.6e-65 244.6
Cre07g1423 . 4 218 Glutathione S-transferase Gene Family AT1G53680 58.5 6.7e-71 264.2
Cre07g1425 . 2 219 Glutathione S-transferase Gene Family AT1G53680 56.4 1.2e-67 253.4
Cre09g1687 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 1.0e-63 240.4
Cre07g1426 . 1 201 Glutathione S-transferase Gene Family AT1G53680 51.0 7.0e-52 201.1
Cre02g0378 . 55 221 Glutathione S-transferase Gene Family AT2G02390 68.3 1.1e-61 233.4
Cre05g0308 . 61 224 Glutathione S-transferase Gene Family AT2G02390 50.9 7.9e-44 174.1
Cre02g0378 . 14 224 Glutathione S-transferase Gene Family AT2G02380 64.9 3.1e-76 282.0
Cre05g0308 . 18 223 Glutathione S-transferase Gene Family AT2G02380 52.6 1.6e-56 216.5
Cre07g1161 . 35 271 Glutathione S-transferase Gene Family AT5G41210 68.4 1.5e-92 336.3
Cre07g1161 . 35 271 Glutathione S-transferase Gene Family AT5G41240 66.7 1.7e-89 327.4
Cre10g2181 . 1 235 Glutathione S-transferase Gene Family AT5G02780 66.5 1.9e-87 319.3
Cre10g2180 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.8e-83 305.4
Cre02g1689 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.8e-80 295.0
Cre02g1689 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.3e-85 313.5
Cre10g2181 . 6 233 Glutathione S-transferase Gene Family AT3G55040 60.1 2.5e-78 289.3
Cre10g2180 . 3 234 Glutathione S-transferase Gene Family AT3G55040 58.4 9.7e-78 287.3
Cre10g2181 . 1 235 Glutathione S-transferase Gene Family AT5G02790 68.9 7.8e-94 340.5
Cre10g2180 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 2.0e-89 325.9
Cre02g1689 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 4.0e-82 301.6
Cre02g1663 . 1 212 Glutathione S-transferase Gene Family AT1G19570 65.7 1.5e-80 296.2
Cre05g1317 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.9 3.4e-72 268.5
Cre02g1663 . 1 211 Glutathione S-transferase Gene Family AT1G75270 69.8 5.4e-86 314.3
Cre05g1317 . 65 272 Glutathione S-transferase Gene Family AT1G75270 62.2 4.3e-75 278.1
Cre05g1317 . 9 274 Glutathione S-transferase Gene Family AT5G16710 68.3 7.7e-103 370.5
Cre02g1663 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 5.4e-72 268.1
Cre11g2016 . 510 765 Glutathione S-transferase Gene Family AT1G77290 69.5 7.2e-104 374.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014456 0 1 0 0 0 1 0 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 21