Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1706 ATGAGTTGTTTCCCTTGCTGCGACGAGTTCGCGGATCTACCTCAGATCTGCGCCAATCGTCGTCGTTTGCTGCAGATCTCCGTCACTGCACCGCTGGACGTGACGCTGCGCCGCCGGTCCGCTGCTCGTCTGGGAGTTGCCACTGAAACTGCATCGCCTGTGGGACTGGTCGGTCGAAAGCGGAACGGGGTTGGGGGAGGGACCACTGGAGGATGGTGGCACATGCCTGCTGTCAAATCAAAAGGGGAATGGAGGGTGAGGATTAAAAGTCCGATTGTGGTACCGGCTTACTCTAAAATTGTTTGGGAGATGGGAGAGCGCGGTGGGGTTGTGAGTGATTGCGTTGGGTTTAGGCAGCGGAGGAATCTTCTTAATTATTGGGGAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCCACGACCAATAAAGAAGTTGATGGGCACATACCCAATTACCCGAACCTACCTCCCCAGTTGATATGTCAACTTCACAACGTTACAATGCATGCAGATGTGGAAACGGATGAAGTATATGCCCAGATGACATTACAGCCTCTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCTAGTAGACAGCCAACAAATTACTTTTGCAAAACGTTGACAGCAAGTGATACAAGCACCCATGGAGGATTTTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGATTTTTCACAACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTCGAATGGAAGTTTAGGCATATTTTTCGAGAGAATAAGATTGTTTGCTTGGTTGGTCTCTGGGTTGGGAGGATGTCTTATTTTCCCTCCTTGTACTCTTTCGTTAATGAAAAGTTGCTAACTGCTATTGCCTTGAGGAGTGGTAGGTTGACAAGAGTTGTTTATGGGAAGAGGAAGTACACCATTGTTCCTTCAACTCCAATGATTAATTCTTGCAGACAAGCAGTGGATGAGTGGATCTTCAGACAGCCAAAACGACACCTTCTTACAACTGGTTGGAGTGTGTTCGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTACTTTTTATATGGAATGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACAAGACCACAAACTGTGATGCCCTCTTCTGTTTTGTCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCAGCTCATGCTGCTGCAACGAATAGCTGTTTCACAGTGTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAGACTGAAGAGTCAAGCGTTCGAAG 1541 47.96 MSCFPCCDEFADLPQICANRRRLLQISVTAPLDVTLRRRSAARLGVATETASPVGLVGRKRNGVGGGTTGGWWHMPAVKSKGEWRVRIKSPIVVPAYSKIVWEMGERGGVVSDCVGFRQRRNLLNYWGKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRENKIVCLVGLWVGRMSYFPSLYSFVNEKLLTAIALRSGRLTRVVYGKRKYTIVPSTPMINSCRQAVDEWIFRQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVR 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35179143 35199077 + CrPI670011_09g017060.1 Cre09g1706 508374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1706 513 Pfam Auxin response factor 456 512 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre09g1706 513 SUPERFAMILY DNA-binding pseudobarrel domain 243 319 IPR015300 -
Cre09g1706 513 SUPERFAMILY DNA-binding pseudobarrel domain 384 459 IPR015300 -
Cre09g1706 513 Pfam B3 DNA binding domain 259 320 IPR003340 GO:0003677(InterPro)
Cre09g1706 513 Pfam B3 DNA binding domain 388 431 IPR003340 GO:0003677(InterPro)
Cre09g1706 513 Gene3D - 257 432 IPR015300 -
Cre09g1706 513 CDD B3_DNA 258 430 IPR003340 GO:0003677(InterPro)
Cre09g1706 513 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 151 513 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre09g1706 513 SMART B3_2 259 432 IPR003340 GO:0003677(InterPro)
Cre09g1706 513 ProSiteProfiles B3 DNA-binding domain profile. 384 432 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1706 Cre-Chr9:35179143 Cre11g0629 Cre-Chr11:3472763 4.40E-118 dispersed
Cre09g1706 Cre-Chr9:35179143 Cre04g2093 Cre-Chr4:38145730 8.80E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54388 PF06507 Auxin_resp 2.90E-19 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1706 K14486 - csv:101208098 388.267